Wall clock time and date at job start Mon Mar 30 2020 00:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99808 * 2 1 4 4 O 1.20827 * 120.00265 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00076 * 179.97438 * 3 2 1 6 6 C 1.53002 * 110.64064 * 298.31046 * 5 3 2 7 7 C 1.55150 * 110.72185 * 174.97042 * 5 3 2 8 8 C 1.55126 * 101.48884 * 205.97000 * 7 5 3 9 9 N 1.47424 * 104.72085 * 37.29479 * 8 7 5 10 10 C 1.37337 * 125.64940 * 155.81647 * 9 8 7 11 11 O 1.35091 * 120.00208 * 179.69082 * 10 9 8 12 12 N 1.30101 * 119.99938 * 359.69731 * 10 9 8 13 13 C 1.46499 * 120.00242 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47470 * 114.99611 * 13 12 10 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00298 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00080 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99729 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46954 * 90.00351 * 18 16 14 20 20 H 1.48498 * 109.47111 * 210.00050 * 18 16 14 21 21 H 1.48494 * 109.47420 * 330.00033 * 18 16 14 22 22 C 1.47026 * 108.70413 * 335.55574 * 9 8 7 23 23 H 1.08994 * 109.47029 * 60.01125 * 1 2 3 24 24 H 1.09003 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47433 * 300.00269 * 1 2 3 26 26 H 1.08991 * 109.47192 * 181.68565 * 6 5 3 27 27 H 1.08997 * 109.46743 * 301.68840 * 6 5 3 28 28 H 1.09000 * 109.47146 * 61.68422 * 6 5 3 29 29 H 1.08998 * 111.00902 * 324.21261 * 7 5 3 30 30 H 1.09009 * 111.00048 * 88.06054 * 7 5 3 31 31 H 1.09005 * 110.49491 * 278.45705 * 8 7 5 32 32 H 1.08994 * 110.34706 * 156.05838 * 8 7 5 33 33 H 0.96700 * 114.00057 * 0.02562 * 11 10 9 34 34 H 1.09003 * 109.47104 * 234.99980 * 13 12 10 35 35 H 1.09001 * 109.47095 * 354.99485 * 13 12 10 36 36 H 0.97000 * 120.00224 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.88212 * 120.70301 * 22 9 8 38 38 H 1.08996 * 109.87878 * 241.86532 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1400 0.6253 1.2615 7 6 4.0389 2.7472 -0.1267 8 6 5.4380 2.5679 -0.7722 9 7 5.2748 1.4460 -1.7146 10 6 6.0505 1.2131 -2.8238 11 8 5.8027 0.1418 -3.6085 12 7 7.0240 2.0242 -3.1187 13 6 7.8518 1.7755 -4.3016 14 6 7.6529 2.8891 -5.2972 15 1 6.9778 3.7012 -5.0713 16 6 8.3329 2.8713 -6.4965 17 7 8.1597 3.8434 -7.3651 18 14 9.5012 1.4670 -6.8869 19 1 8.7581 0.3821 -7.5767 20 1 10.5898 1.9594 -7.7687 21 1 10.0846 0.9432 -5.6258 22 6 4.1481 0.6143 -1.2670 23 1 -0.3633 0.5136 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 5.2258 0.7194 1.2568 27 1 3.7359 1.1234 2.1427 28 1 3.8668 -0.4297 1.2832 29 1 3.3747 3.3159 -0.7775 30 1 4.1200 3.2176 0.8533 31 1 6.1798 2.3205 -0.0128 32 1 5.7278 3.4728 -1.3062 33 1 5.0606 -0.4015 -3.3097 34 1 8.9009 1.7331 -4.0085 35 1 7.5626 0.8272 -4.7546 36 1 8.6377 3.8307 -8.2090 37 1 3.3866 0.5715 -2.0456 38 1 4.4993 -0.3908 -1.0334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331160609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:35 Heat of formation + Delta-G solvation = -90.818399 kcal Electronic energy + Delta-G solvation = -21020.685776 eV Core-core repulsion = 17671.473431 eV Total energy + Delta-G solvation = -3349.212345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20966 -39.39848 -37.66052 -36.66042 -33.96986 -33.06060 -31.75612 -29.84214 -28.07263 -27.99504 -26.41844 -23.98468 -22.76049 -21.48265 -20.07897 -19.58408 -18.35412 -17.57797 -16.83869 -16.72280 -16.62954 -15.71077 -15.04053 -14.47734 -14.34862 -14.03462 -13.87795 -13.52463 -13.21825 -13.04682 -12.85223 -12.67287 -12.36698 -12.34465 -12.16226 -12.01290 -11.65761 -11.42257 -11.14420 -10.99915 -10.88489 -10.66413 -10.43332 -10.19654 -9.49819 -9.19915 -8.62316 -8.26112 -7.19252 -5.93876 -3.89598 1.82719 2.28182 2.99677 3.38262 3.43743 3.48671 3.51357 3.85015 4.18371 4.37610 4.48578 4.53389 4.61150 4.76446 4.84462 4.97195 5.11079 5.16352 5.17027 5.35808 5.39529 5.42104 5.46425 5.68200 5.71130 5.94022 5.99181 6.04490 6.10089 6.72125 7.13229 7.17915 7.32128 7.38770 7.83881 8.45825 8.59768 9.11551 9.22977 9.69423 11.19816 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.003870 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.525689 B = 7233.850321 C = 7292.610245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.477 3.523 4 O -0.497 6.497 5 C -0.062 4.062 6 C -0.136 4.136 7 C -0.115 4.115 8 C 0.137 3.863 9 N -0.637 5.637 10 C 0.540 3.460 11 O -0.502 6.502 12 N -0.560 5.560 13 C 0.172 3.828 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.126 3.874 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.378 0.622 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.182 -10.784 19.770 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.318 3.682 4 O -0.383 6.383 5 C -0.064 4.064 6 C -0.193 4.193 7 C -0.153 4.153 8 C 0.014 3.986 9 N -0.372 5.372 10 C 0.228 3.772 11 O -0.293 6.293 12 N -0.305 5.305 13 C 0.044 3.956 14 C -0.542 4.542 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.545 5.545 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.002 3.998 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.230 0.770 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.440 -9.628 19.350 25.451 hybrid contribution -0.403 -1.578 -0.639 1.749 sum -13.843 -11.205 18.711 25.832 Atomic orbital electron populations 1.23304 0.76147 1.03837 1.02693 1.86511 1.23531 1.33227 1.83935 1.23374 0.91198 0.81467 0.72131 1.90690 1.66745 1.36369 1.44511 1.21500 0.86937 0.99854 0.98086 1.21837 1.02375 1.00980 0.94132 1.22993 0.97104 0.92334 1.02904 1.22036 0.94842 0.90619 0.91097 1.46390 1.33815 1.30169 1.26809 1.20222 0.90379 0.84268 0.82336 1.85358 1.53543 1.38263 1.52157 1.72477 1.09127 1.24548 1.24325 1.19775 0.92105 0.96504 0.87186 1.21092 1.26226 1.07580 0.99300 0.90747 1.24904 0.96670 0.95943 0.96000 1.69904 1.43309 1.32476 1.08792 0.86792 0.81124 0.82852 0.78584 1.20320 1.21247 1.19099 1.21717 0.89245 0.94688 0.94185 0.91721 0.87943 0.91859 0.90130 0.91547 0.90913 0.89080 0.88940 0.91752 0.89049 0.77027 0.95247 0.97817 0.92793 0.91773 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.14 10.52 -39.24 -0.41 -3.55 16 3 C 0.48 4.96 6.46 36.01 0.23 5.20 16 4 O -0.50 -6.54 15.51 -18.75 -0.29 -6.83 16 5 C -0.06 -0.57 0.86 -153.83 -0.13 -0.71 16 6 C -0.14 -0.92 8.40 37.16 0.31 -0.61 16 7 C -0.12 -1.19 5.65 -24.47 -0.14 -1.33 16 8 C 0.14 1.76 6.61 -2.41 -0.02 1.75 16 9 N -0.64 -9.29 3.41 -172.98 -0.59 -9.88 16 10 C 0.54 10.63 8.74 -88.57 -0.77 9.85 16 11 O -0.50 -9.19 11.99 -16.98 -0.20 -9.39 16 12 N -0.56 -13.62 9.99 -63.71 -0.64 -14.25 16 13 C 0.17 4.74 5.15 -5.20 -0.03 4.72 16 14 C -0.50 -15.79 9.94 -34.44 -0.34 -16.14 16 15 H 0.07 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.91 -29.30 13.96 55.43 0.77 -28.53 16 18 Si 0.88 22.91 27.47 -169.99 -4.67 18.25 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.27 -6.72 6.54 56.52 0.37 -6.35 16 22 C 0.13 1.30 5.19 -3.06 -0.02 1.28 16 23 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 26 H 0.08 0.55 7.44 -51.93 -0.39 0.16 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 1.11 7.49 -51.93 -0.39 0.72 16 30 H 0.09 0.77 8.04 -51.92 -0.42 0.35 16 31 H 0.06 0.74 7.71 -51.93 -0.40 0.34 16 32 H 0.09 1.41 8.02 -51.93 -0.42 0.99 16 33 H 0.38 4.54 7.67 45.56 0.35 4.89 16 34 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 35 H 0.00 0.11 6.17 -51.93 -0.32 -0.21 16 36 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 37 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 38 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -38.28 319.06 -6.02 -44.30 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.87 Total: -2.14 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 0.07 Total: 7.22 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.45 Total: -52.66 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.91 Total: -19.77 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -38.28 -6.02 -44.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331160609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.521 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds