Wall clock time and date at job start Mon Mar 30 2020 00:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99808 * 2 1 4 4 O 1.20827 * 120.00265 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00076 * 179.97438 * 3 2 1 6 6 C 1.53002 * 110.64064 * 298.31046 * 5 3 2 7 7 C 1.55150 * 110.72185 * 174.97042 * 5 3 2 8 8 C 1.55126 * 101.48884 * 205.97000 * 7 5 3 9 9 N 1.47424 * 104.72085 * 37.29479 * 8 7 5 10 10 C 1.37337 * 125.64940 * 155.81647 * 9 8 7 11 11 O 1.35091 * 120.00208 * 179.69082 * 10 9 8 12 12 N 1.30101 * 119.99938 * 359.69731 * 10 9 8 13 13 C 1.46499 * 120.00242 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47470 * 114.99611 * 13 12 10 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00298 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00080 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99729 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46954 * 90.00351 * 18 16 14 20 20 H 1.48498 * 109.47111 * 210.00050 * 18 16 14 21 21 H 1.48494 * 109.47420 * 330.00033 * 18 16 14 22 22 C 1.47026 * 108.70413 * 335.55574 * 9 8 7 23 23 H 1.08994 * 109.47029 * 60.01125 * 1 2 3 24 24 H 1.09003 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47433 * 300.00269 * 1 2 3 26 26 H 1.08991 * 109.47192 * 181.68565 * 6 5 3 27 27 H 1.08997 * 109.46743 * 301.68840 * 6 5 3 28 28 H 1.09000 * 109.47146 * 61.68422 * 6 5 3 29 29 H 1.08998 * 111.00902 * 324.21261 * 7 5 3 30 30 H 1.09009 * 111.00048 * 88.06054 * 7 5 3 31 31 H 1.09005 * 110.49491 * 278.45705 * 8 7 5 32 32 H 1.08994 * 110.34706 * 156.05838 * 8 7 5 33 33 H 0.96700 * 114.00057 * 0.02562 * 11 10 9 34 34 H 1.09003 * 109.47104 * 234.99980 * 13 12 10 35 35 H 1.09001 * 109.47095 * 354.99485 * 13 12 10 36 36 H 0.97000 * 120.00224 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.88212 * 120.70301 * 22 9 8 38 38 H 1.08996 * 109.87878 * 241.86532 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1400 0.6253 1.2615 7 6 4.0389 2.7472 -0.1267 8 6 5.4380 2.5679 -0.7722 9 7 5.2748 1.4460 -1.7146 10 6 6.0505 1.2131 -2.8238 11 8 5.8027 0.1418 -3.6085 12 7 7.0240 2.0242 -3.1187 13 6 7.8518 1.7755 -4.3016 14 6 7.6529 2.8891 -5.2972 15 1 6.9778 3.7012 -5.0713 16 6 8.3329 2.8713 -6.4965 17 7 8.1597 3.8434 -7.3651 18 14 9.5012 1.4670 -6.8869 19 1 8.7581 0.3821 -7.5767 20 1 10.5898 1.9594 -7.7687 21 1 10.0846 0.9432 -5.6258 22 6 4.1481 0.6143 -1.2670 23 1 -0.3633 0.5136 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 5.2258 0.7194 1.2568 27 1 3.7359 1.1234 2.1427 28 1 3.8668 -0.4297 1.2832 29 1 3.3747 3.3159 -0.7775 30 1 4.1200 3.2176 0.8533 31 1 6.1798 2.3205 -0.0128 32 1 5.7278 3.4728 -1.3062 33 1 5.0606 -0.4015 -3.3097 34 1 8.9009 1.7331 -4.0085 35 1 7.5626 0.8272 -4.7546 36 1 8.6377 3.8307 -8.2090 37 1 3.3866 0.5715 -2.0456 38 1 4.4993 -0.3908 -1.0334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331160609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:34 Heat of formation + Delta-G solvation = -122.774973 kcal Electronic energy + Delta-G solvation = -21022.071517 eV Core-core repulsion = 17671.473431 eV Total energy + Delta-G solvation = -3350.598086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.05128 -40.59311 -38.83923 -37.50577 -35.82927 -34.59126 -33.55684 -30.81033 -29.80116 -28.62186 -27.46168 -25.27783 -23.74237 -23.25828 -21.29009 -20.70637 -19.58386 -18.96750 -18.37247 -17.66778 -17.57351 -16.99252 -16.41283 -16.17010 -15.47908 -15.23491 -14.91107 -14.67087 -14.47590 -14.37098 -14.08467 -14.00713 -13.63158 -13.42256 -13.03733 -12.97199 -12.87315 -12.61724 -12.49267 -12.16437 -12.14400 -11.83609 -11.81565 -11.73104 -11.45891 -10.88955 -10.71324 -10.19168 -8.74734 -8.31300 -6.35343 1.01087 1.32604 1.36396 1.49062 1.50703 1.78429 1.95235 2.34508 2.92695 3.01945 3.26611 3.38164 3.68494 3.89077 4.07477 4.23264 4.26015 4.31218 4.34101 4.48334 4.63900 4.73122 4.76169 4.86207 4.87967 4.95484 4.98070 5.07624 5.21117 5.27607 5.34218 5.50925 5.58348 5.84791 6.26284 6.61503 6.66496 7.09327 7.23850 7.56842 8.86225 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.003870 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.525689 B = 7233.850321 C = 7292.610245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.480 3.520 4 O -0.530 6.530 5 C -0.054 4.054 6 C -0.132 4.132 7 C -0.107 4.107 8 C 0.132 3.868 9 N -0.632 5.632 10 C 0.562 3.438 11 O -0.514 6.514 12 N -0.619 5.619 13 C 0.190 3.810 14 C -0.523 4.523 15 H 0.020 0.980 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.960 3.040 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.252 1.252 22 C 0.120 3.880 23 H 0.056 0.944 24 H 0.134 0.866 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.406 0.594 34 H 0.023 0.977 35 H 0.003 0.997 36 H 0.269 0.731 37 H 0.066 0.934 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 -13.925 21.446 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.323 3.677 4 O -0.419 6.419 5 C -0.056 4.056 6 C -0.189 4.189 7 C -0.145 4.145 8 C 0.010 3.990 9 N -0.365 5.365 10 C 0.250 3.750 11 O -0.308 6.308 12 N -0.368 5.368 13 C 0.061 3.939 14 C -0.562 4.562 15 H 0.039 0.961 16 C -0.192 4.192 17 N -0.591 5.591 18 Si 0.782 3.218 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.176 1.176 22 C -0.003 4.003 23 H 0.075 0.925 24 H 0.152 0.848 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.021 0.979 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.817 -12.813 21.083 28.276 hybrid contribution -0.566 -0.598 -1.072 1.351 sum -14.383 -13.410 20.011 28.056 Atomic orbital electron populations 1.23579 0.74752 1.05869 1.02457 1.86501 1.24871 1.32105 1.83337 1.23524 0.91502 0.81447 0.71214 1.90689 1.67501 1.37536 1.46188 1.21479 0.86421 0.98773 0.98879 1.21870 1.02457 1.01721 0.92819 1.22898 0.94820 0.93472 1.03339 1.22166 0.97051 0.88915 0.90848 1.46609 1.33614 1.31005 1.25300 1.20264 0.89065 0.83248 0.82419 1.85279 1.55105 1.38152 1.52304 1.72403 1.12357 1.27642 1.24357 1.19353 0.92633 0.94385 0.87568 1.21342 1.25799 1.07772 1.01277 0.96121 1.25968 0.98566 0.99268 0.95384 1.70064 1.44654 1.34879 1.09528 0.85538 0.78515 0.78736 0.79040 1.18841 1.19875 1.17550 1.22054 0.87873 0.95559 0.94775 0.92481 0.84796 0.91674 0.89696 0.90513 0.89375 0.91372 0.86459 0.89612 0.92461 0.73777 0.95959 0.97890 0.92216 0.91542 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.23 10.52 -51.35 -0.54 -5.77 16 3 C 0.48 8.99 6.46 71.24 0.46 9.45 16 4 O -0.53 -13.45 15.51 21.96 0.34 -13.11 16 5 C -0.05 -0.85 0.86 -51.74 -0.04 -0.90 16 6 C -0.13 -1.28 8.40 71.98 0.60 -0.67 16 7 C -0.11 -2.09 5.65 32.06 0.18 -1.91 16 8 C 0.13 3.34 6.61 86.93 0.57 3.92 16 9 N -0.63 -17.61 3.41 -811.64 -2.76 -20.38 16 10 C 0.56 21.81 8.74 179.63 1.57 23.38 16 11 O -0.51 -17.94 11.99 -83.66 -1.00 -18.95 16 12 N -0.62 -30.82 9.99 -469.73 -4.69 -35.51 16 13 C 0.19 10.63 5.15 85.63 0.44 11.07 16 14 C -0.52 -34.28 9.94 25.60 0.25 -34.02 16 15 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 16 C 0.00 0.31 5.47 84.65 0.46 0.77 16 17 N -0.95 -63.34 13.96 21.45 0.30 -63.04 16 18 Si 0.96 47.52 27.47 68.60 1.88 49.40 16 19 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 22 C 0.12 2.12 5.19 86.73 0.45 2.57 16 23 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 24 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 26 H 0.08 0.81 7.44 -2.39 -0.02 0.79 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.67 7.49 -2.39 -0.02 1.65 16 30 H 0.12 1.72 8.04 -2.38 -0.02 1.70 16 31 H 0.09 1.83 7.71 -2.38 -0.02 1.82 16 32 H 0.06 1.86 8.02 -2.39 -0.02 1.84 16 33 H 0.41 8.54 7.67 -74.06 -0.57 7.98 16 34 H 0.02 1.26 7.20 -2.39 -0.02 1.24 16 35 H 0.00 0.17 6.17 -2.39 -0.01 0.16 16 36 H 0.27 16.46 8.31 -92.71 -0.77 15.69 16 37 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 38 H 0.11 1.30 7.84 -2.39 -0.02 1.29 16 Total: -1.00 -87.45 319.06 0.12 -87.33 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.44 Total: 4.87 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.15 Total: 15.14 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -7.16 Total: -118.92 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.20 Total: -37.83 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.88 Total: 49.40 kcal Total: -87.45 0.12 -87.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331160609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.441 kcal (2) G-P(sol) polarization free energy of solvation -87.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds