Wall clock time and date at job start Mon Mar 30 2020 00:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46787 * 300.00001 * 3 2 1 6 6 H 1.48494 * 109.47230 * 60.00098 * 3 2 1 7 7 C 1.37876 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47225 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47080 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99927 * 180.02562 * 12 11 10 14 14 O 1.21352 * 119.99717 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00214 * 179.97438 * 13 12 11 16 16 O 1.21346 * 119.99906 * 353.31515 * 15 13 12 17 17 N 1.34777 * 120.00115 * 173.30785 * 15 13 12 18 18 C 1.47168 * 120.94312 * 352.06359 * 17 15 13 19 19 C 1.53297 * 108.37385 * 230.51306 * 18 17 15 20 20 O 1.42962 * 109.26423 * 307.77433 * 19 18 17 21 21 C 1.42958 * 114.16713 * 62.55252 * 20 19 18 22 22 C 1.47149 * 120.98157 * 172.11936 * 17 15 13 23 23 H 0.96996 * 120.00111 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47345 * 59.99964 * 9 7 2 25 25 H 1.09001 * 109.47024 * 299.99871 * 9 7 2 26 26 H 1.09005 * 109.47224 * 60.00194 * 10 9 7 27 27 H 1.09001 * 109.47292 * 299.99986 * 10 9 7 28 28 H 1.08994 * 109.47206 * 59.99888 * 11 10 9 29 29 H 1.09001 * 109.47105 * 300.00261 * 11 10 9 30 30 H 0.97000 * 120.00103 * 0.02562 * 12 11 10 31 31 H 1.08994 * 109.64836 * 110.81371 * 18 17 15 32 32 H 1.09005 * 109.72596 * 350.25265 * 18 17 15 33 33 H 1.08997 * 109.51494 * 187.82146 * 19 18 17 34 34 H 1.09005 * 109.51275 * 67.72216 * 19 18 17 35 35 H 1.08998 * 109.51593 * 57.35140 * 21 20 19 36 36 H 1.09010 * 109.51175 * 177.44988 * 21 20 19 37 37 H 1.09008 * 109.67843 * 9.71949 * 22 17 15 38 38 H 1.08998 * 109.68730 * 249.16662 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1006 -0.0037 13 6 1.9831 -7.3713 -0.0047 14 8 0.7900 -7.5930 -0.0048 15 6 2.9543 -8.5072 -0.0057 16 8 4.1419 -8.2900 -0.1278 17 7 2.5111 -9.7729 0.1293 18 6 1.1023 -10.0510 0.4515 19 6 1.0602 -11.0191 1.6393 20 8 1.8829 -12.1528 1.3532 21 6 3.2664 -11.8414 1.1728 22 6 3.4216 -10.9164 -0.0398 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8880 26 1 2.8719 -3.6051 0.8873 27 1 2.8719 -3.6035 -0.8927 28 1 0.8533 -5.0443 -0.8930 29 1 0.8539 -5.0454 0.8869 30 1 3.3860 -5.9233 -0.0032 31 1 0.6121 -10.5050 -0.4097 32 1 0.5952 -9.1231 0.7161 33 1 0.0341 -11.3467 1.8059 34 1 1.4313 -10.5161 2.5323 35 1 3.6462 -11.3409 2.0635 36 1 3.8276 -12.7606 1.0045 37 1 4.4502 -10.5607 -0.1009 38 1 3.1654 -11.4583 -0.9502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339297882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:44 Heat of formation + Delta-G solvation = -109.816612 kcal Electronic energy + Delta-G solvation = -20384.521673 eV Core-core repulsion = 17034.485503 eV Total energy + Delta-G solvation = -3350.036169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10897 -39.31509 -38.26524 -36.00227 -34.87945 -33.36906 -31.80333 -31.30760 -28.62055 -27.15526 -25.07960 -24.19476 -22.91241 -21.48071 -20.84823 -19.75212 -17.92966 -17.35221 -16.52142 -16.46000 -16.38794 -15.86995 -15.51144 -15.32931 -15.03084 -14.81168 -14.46603 -14.02881 -13.95151 -13.34021 -12.82899 -12.44075 -12.34327 -11.91799 -11.88103 -11.74405 -11.46882 -11.07632 -10.95233 -10.81070 -10.61217 -10.56402 -9.95374 -9.67621 -9.32700 -9.15730 -9.05255 -8.95593 -8.41310 -6.05821 -4.08874 1.28561 2.11303 3.06272 3.27963 3.28157 3.35970 3.39807 3.48169 4.24544 4.38786 4.42169 4.60437 4.69516 4.84804 4.89918 5.16023 5.25359 5.30414 5.37674 5.43584 5.52526 5.62828 5.66114 5.91101 6.01800 6.26276 6.48543 6.63914 6.70426 6.75513 6.90485 7.19768 7.58147 7.59168 7.69256 7.92065 7.94410 8.33553 8.97857 9.55822 11.05514 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050731 B = 0.002855 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.794410 B = 9803.965274 C =10166.545175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.687 5.687 13 C 0.503 3.497 14 O -0.519 6.519 15 C 0.511 3.489 16 O -0.520 6.520 17 N -0.590 5.590 18 C 0.041 3.959 19 C 0.046 3.954 20 O -0.382 6.382 21 C 0.049 3.951 22 C 0.073 3.927 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.412 0.588 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -23.148 1.993 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.338 5.338 13 C 0.283 3.717 14 O -0.398 6.398 15 C 0.294 3.706 16 O -0.396 6.396 17 N -0.325 5.325 18 C -0.081 4.081 19 C -0.032 4.032 20 O -0.301 6.301 21 C -0.028 4.028 22 C -0.050 4.050 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.248 0.752 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.113 -23.216 1.909 23.655 hybrid contribution 0.944 1.230 -0.071 1.552 sum 5.057 -21.986 1.837 22.635 Atomic orbital electron populations 1.69965 1.06068 1.26650 1.50608 1.25025 0.94864 0.99351 0.95206 0.86519 0.80089 0.83676 0.77620 1.19718 1.20979 1.20976 1.21234 0.93094 0.90865 1.50909 0.92516 1.19034 0.93780 0.90780 0.97726 1.21937 0.99904 0.92913 1.01355 1.21887 0.91720 0.84670 1.02655 1.46123 1.12356 1.04940 1.70380 1.19979 0.88411 0.84491 0.78800 1.90518 1.16359 1.83340 1.49535 1.20315 0.88541 0.84024 0.77723 1.90751 1.16428 1.84082 1.48300 1.47943 1.11473 1.04722 1.68397 1.23485 0.81241 1.04454 0.98906 1.23101 0.96345 0.87246 0.96471 1.87960 1.18224 1.32243 1.91624 1.22966 0.83428 0.99705 0.96728 1.22433 0.96187 0.86927 0.99432 0.92943 0.96184 0.96178 0.92415 0.92385 0.90935 0.90936 0.75227 0.90311 0.83518 0.87275 0.92612 0.92473 0.87425 0.87782 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.11 1.85 5.67 -4.04 -0.02 1.82 16 12 N -0.69 -9.90 5.55 -60.73 -0.34 -10.23 16 13 C 0.50 7.22 7.74 -11.58 -0.09 7.13 16 14 O -0.52 -8.07 13.21 5.49 0.07 -8.00 16 15 C 0.51 6.81 7.75 -11.58 -0.09 6.72 16 16 O -0.52 -7.75 15.97 5.50 0.09 -7.66 16 17 N -0.59 -6.55 3.02 -172.77 -0.52 -7.07 16 18 C 0.04 0.40 6.13 -3.52 -0.02 0.38 16 19 C 0.05 0.38 6.98 37.31 0.26 0.64 16 20 O -0.38 -3.58 10.74 -35.23 -0.38 -3.96 16 21 C 0.05 0.37 6.98 37.31 0.26 0.63 16 22 C 0.07 0.63 6.66 -3.53 -0.02 0.61 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.41 5.45 7.96 -40.82 -0.33 5.13 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.15 1.68 4.50 -53.94 -0.24 1.43 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.10 0.93 7.06 -51.92 -0.37 0.56 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -31.60 318.65 -6.53 -38.12 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.55 Total: 0.66 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.42 Total: 2.74 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.12 Total: -42.99 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.22 Total: -19.61 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.60 -6.53 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339297882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.695 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds