Wall clock time and date at job start Mon Mar 30 2020 00:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46787 * 300.00001 * 3 2 1 6 6 H 1.48494 * 109.47230 * 60.00098 * 3 2 1 7 7 C 1.37876 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47225 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47080 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99927 * 180.02562 * 12 11 10 14 14 O 1.21352 * 119.99717 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00214 * 179.97438 * 13 12 11 16 16 O 1.21346 * 119.99906 * 353.31515 * 15 13 12 17 17 N 1.34777 * 120.00115 * 173.30785 * 15 13 12 18 18 C 1.47168 * 120.94312 * 352.06359 * 17 15 13 19 19 C 1.53297 * 108.37385 * 230.51306 * 18 17 15 20 20 O 1.42962 * 109.26423 * 307.77433 * 19 18 17 21 21 C 1.42958 * 114.16713 * 62.55252 * 20 19 18 22 22 C 1.47149 * 120.98157 * 172.11936 * 17 15 13 23 23 H 0.96996 * 120.00111 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47345 * 59.99964 * 9 7 2 25 25 H 1.09001 * 109.47024 * 299.99871 * 9 7 2 26 26 H 1.09005 * 109.47224 * 60.00194 * 10 9 7 27 27 H 1.09001 * 109.47292 * 299.99986 * 10 9 7 28 28 H 1.08994 * 109.47206 * 59.99888 * 11 10 9 29 29 H 1.09001 * 109.47105 * 300.00261 * 11 10 9 30 30 H 0.97000 * 120.00103 * 0.02562 * 12 11 10 31 31 H 1.08994 * 109.64836 * 110.81371 * 18 17 15 32 32 H 1.09005 * 109.72596 * 350.25265 * 18 17 15 33 33 H 1.08997 * 109.51494 * 187.82146 * 19 18 17 34 34 H 1.09005 * 109.51275 * 67.72216 * 19 18 17 35 35 H 1.08998 * 109.51593 * 57.35140 * 21 20 19 36 36 H 1.09010 * 109.51175 * 177.44988 * 21 20 19 37 37 H 1.09008 * 109.67843 * 9.71949 * 22 17 15 38 38 H 1.08998 * 109.68730 * 249.16662 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1006 -0.0037 13 6 1.9831 -7.3713 -0.0047 14 8 0.7900 -7.5930 -0.0048 15 6 2.9543 -8.5072 -0.0057 16 8 4.1419 -8.2900 -0.1278 17 7 2.5111 -9.7729 0.1293 18 6 1.1023 -10.0510 0.4515 19 6 1.0602 -11.0191 1.6393 20 8 1.8829 -12.1528 1.3532 21 6 3.2664 -11.8414 1.1728 22 6 3.4216 -10.9164 -0.0398 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8880 26 1 2.8719 -3.6051 0.8873 27 1 2.8719 -3.6035 -0.8927 28 1 0.8533 -5.0443 -0.8930 29 1 0.8539 -5.0454 0.8869 30 1 3.3860 -5.9233 -0.0032 31 1 0.6121 -10.5050 -0.4097 32 1 0.5952 -9.1231 0.7161 33 1 0.0341 -11.3467 1.8059 34 1 1.4313 -10.5161 2.5323 35 1 3.6462 -11.3409 2.0635 36 1 3.8276 -12.7606 1.0045 37 1 4.4502 -10.5607 -0.1009 38 1 3.1654 -11.4583 -0.9502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339297882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:43 Heat of formation + Delta-G solvation = -132.995066 kcal Electronic energy + Delta-G solvation = -20385.526766 eV Core-core repulsion = 17034.485503 eV Total energy + Delta-G solvation = -3351.041263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12659 -40.24908 -39.25328 -37.30665 -35.95923 -35.13939 -33.06794 -32.49259 -29.58143 -28.74059 -26.25803 -25.19781 -24.27887 -22.45165 -22.39902 -20.88900 -18.98096 -18.51234 -18.29955 -17.45981 -17.24283 -16.99100 -16.46788 -16.39558 -16.20432 -16.04017 -15.83597 -15.16324 -15.10778 -14.37202 -14.28968 -13.80767 -13.67451 -13.46999 -13.14724 -12.79374 -12.58025 -12.45581 -12.38281 -12.36541 -11.85485 -11.70707 -11.53270 -11.31476 -11.20370 -10.55838 -10.48594 -10.25979 -9.80503 -8.20127 -6.30789 0.19282 1.11610 1.41377 1.42206 1.54898 1.96770 2.27107 2.42350 2.84757 3.14096 3.17184 3.69542 3.91764 4.05477 4.06552 4.17167 4.17829 4.20893 4.45817 4.51978 4.62813 4.71358 4.78529 4.85395 4.91057 4.97260 5.07662 5.14800 5.30282 5.51638 5.70606 5.78293 5.84350 6.06133 6.08734 6.23385 6.54646 6.81119 6.86545 7.38761 8.91981 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050731 B = 0.002855 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.794410 B = 9803.965274 C =10166.545175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.127 3.873 12 N -0.683 5.683 13 C 0.503 3.497 14 O -0.532 6.532 15 C 0.513 3.487 16 O -0.540 6.540 17 N -0.586 5.586 18 C 0.040 3.960 19 C 0.049 3.951 20 O -0.393 6.393 21 C 0.050 3.950 22 C 0.069 3.931 23 H 0.263 0.737 24 H -0.004 1.004 25 H -0.002 1.002 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.419 0.581 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 -24.190 2.169 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.004 3.996 12 N -0.335 5.335 13 C 0.284 3.716 14 O -0.411 6.411 15 C 0.295 3.705 16 O -0.417 6.417 17 N -0.320 5.320 18 C -0.081 4.081 19 C -0.028 4.028 20 O -0.312 6.312 21 C -0.027 4.027 22 C -0.052 4.052 23 H 0.072 0.928 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.256 0.744 31 H 0.103 0.897 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.121 0.879 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.365 -24.301 2.088 24.974 hybrid contribution 0.515 1.471 -0.128 1.564 sum 5.880 -22.831 1.960 23.657 Atomic orbital electron populations 1.70093 1.07783 1.27734 1.51722 1.25964 0.95742 1.03361 0.94817 0.85409 0.79153 0.78879 0.77665 1.18482 1.20571 1.20507 1.21710 0.93696 0.92172 1.50387 0.91845 1.18930 0.94327 0.92512 0.95481 1.21647 0.98655 0.91968 1.02185 1.21509 0.91510 0.84307 1.02231 1.45929 1.12343 1.04597 1.70623 1.20229 0.88496 0.84653 0.78213 1.90535 1.17036 1.83660 1.49911 1.20026 0.87907 0.84415 0.78129 1.90744 1.16833 1.84385 1.49773 1.48101 1.12394 1.04571 1.66916 1.23489 0.80477 1.04201 0.99921 1.23144 0.97451 0.86754 0.95466 1.87954 1.19029 1.32604 1.91573 1.23106 0.82950 1.00642 0.95969 1.22657 0.95611 0.86202 1.00751 0.92773 0.98523 0.98392 0.91443 0.91593 0.91600 0.91294 0.74391 0.89713 0.84976 0.85335 0.92609 0.92590 0.84719 0.87930 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.27 4.97 29.85 0.15 1.42 16 10 C -0.11 -4.00 5.27 30.60 0.16 -3.84 16 11 C 0.13 4.16 5.67 86.38 0.49 4.65 16 12 N -0.68 -19.21 5.55 -464.41 -2.58 -21.79 16 13 C 0.50 14.16 7.74 87.27 0.68 14.84 16 14 O -0.53 -16.37 13.21 -3.25 -0.04 -16.42 16 15 C 0.51 13.20 7.75 87.27 0.68 13.88 16 16 O -0.54 -15.58 15.97 -3.24 -0.05 -15.63 16 17 N -0.59 -12.23 3.02 -818.88 -2.47 -14.70 16 18 C 0.04 0.75 6.13 86.35 0.53 1.28 16 19 C 0.05 0.73 6.98 72.08 0.50 1.23 16 20 O -0.39 -6.45 10.74 -148.98 -1.60 -8.05 16 21 C 0.05 0.64 6.98 72.08 0.50 1.14 16 22 C 0.07 1.07 6.66 86.35 0.57 1.65 16 23 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.42 10.66 7.96 -92.71 -0.74 9.93 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 2.93 4.50 -34.24 -0.15 2.78 16 33 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.10 1.66 7.06 -2.38 -0.02 1.65 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -67.08 318.65 0.71 -66.37 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.19 Total: 13.39 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 4.96 Total: 7.00 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -4.76 Total: -92.23 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.70 Total: -40.10 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.08 0.71 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339297882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.628 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds