Wall clock time and date at job start Mon Mar 30 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.52230 * 2 1 4 4 O 1.21281 * 119.99862 * 239.99953 * 3 2 1 5 5 N 1.34772 * 120.00198 * 60.00226 * 3 2 1 6 6 C 1.46496 * 120.00214 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.47522 * 180.02562 * 6 5 3 8 8 O 1.21290 * 119.99426 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00461 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99876 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00219 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99507 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00525 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99679 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00437 * 14 12 10 16 16 H 1.48503 * 109.47399 * 209.99926 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00533 * 14 12 10 18 18 C 1.53180 * 109.52132 * 239.87062 * 2 1 3 19 19 C 1.53309 * 108.96634 * 183.10712 * 18 2 1 20 20 C 1.53101 * 109.19226 * 56.94885 * 19 18 2 21 21 O 1.42902 * 109.41374 * 302.38917 * 20 19 18 22 22 C 1.42905 * 114.09912 * 61.15518 * 21 20 19 23 23 H 1.09001 * 109.46911 * 60.00060 * 1 2 3 24 24 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46794 * 299.99749 * 1 2 3 26 26 H 0.97006 * 120.00264 * 359.97438 * 5 3 2 27 27 H 1.08997 * 109.47383 * 59.99971 * 6 5 3 28 28 H 1.09004 * 109.47443 * 299.99916 * 6 5 3 29 29 H 0.96998 * 119.99373 * 0.02562 * 9 7 6 30 30 H 0.97000 * 119.99509 * 359.97438 * 13 12 10 31 31 H 1.08993 * 109.54957 * 302.92058 * 18 2 1 32 32 H 1.09010 * 109.54044 * 63.18473 * 18 2 1 33 33 H 1.08998 * 109.50948 * 297.03445 * 19 18 2 34 34 H 1.09000 * 109.55750 * 176.89129 * 19 18 2 35 35 H 1.08996 * 109.47743 * 182.40940 * 20 19 18 36 36 H 1.08997 * 109.47821 * 62.37297 * 20 19 18 37 37 H 1.08993 * 109.48158 * 178.85533 * 22 21 20 38 38 H 1.09007 * 109.48447 * 58.83144 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4203 0.0000 4 8 2.7312 1.8163 -0.9096 5 7 1.7088 2.2505 1.0108 6 6 2.1988 3.6310 1.0111 7 6 1.6976 4.3418 2.2418 8 8 0.9993 3.7531 3.0399 9 7 2.0244 5.6319 2.4552 10 6 1.5680 6.2785 3.5745 11 1 0.9462 5.7543 4.2852 12 6 1.9053 7.6083 3.7947 13 7 2.6615 8.2463 2.9298 14 14 1.2829 8.4897 5.3195 15 1 2.2601 8.3175 6.4243 16 1 1.1200 9.9358 5.0237 17 1 -0.0263 7.9164 5.7229 18 6 2.0419 -0.7247 -1.2487 19 6 3.5729 -0.7856 -1.1970 20 6 4.0056 -1.4795 0.0973 21 8 3.4695 -0.7724 1.2175 22 6 2.0416 -0.7242 1.2480 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.1506 1.9339 1.7382 27 1 1.8364 4.1454 0.1211 28 1 3.2889 3.6298 1.0114 29 1 2.5819 6.1029 1.8163 30 1 2.9844 7.7887 2.1378 31 1 1.6376 -1.7366 -1.2746 32 1 1.7269 -0.1820 -2.1401 33 1 3.9784 0.2259 -1.2212 34 1 3.9448 -1.3477 -2.0536 35 1 5.0938 -1.4872 0.1592 36 1 3.6337 -2.5040 0.1022 37 1 1.7150 -0.1880 2.1390 38 1 1.6439 -1.7389 1.2682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344151461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:27 Heat of formation + Delta-G solvation = -132.347602 kcal Electronic energy + Delta-G solvation = -21304.018613 eV Core-core repulsion = 17953.005427 eV Total energy + Delta-G solvation = -3351.013186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79741 -38.73526 -37.85943 -34.79377 -34.56314 -33.94634 -32.12584 -31.22176 -27.71576 -27.13768 -25.22265 -24.43950 -23.04709 -21.57166 -19.95837 -19.42239 -18.06599 -17.27875 -16.35785 -16.02083 -15.83190 -15.42136 -15.38875 -14.71644 -14.62662 -14.33220 -13.90398 -13.79325 -13.61329 -12.78482 -12.76610 -12.44876 -12.35690 -12.21177 -12.09506 -11.93058 -11.30934 -11.13543 -11.00381 -10.74951 -10.61797 -10.26068 -9.97626 -9.75863 -9.67255 -9.35856 -8.80192 -8.67794 -8.15794 -6.84741 -3.99165 2.77890 3.24322 3.27000 3.32658 3.50729 3.69642 3.78475 4.19845 4.35569 4.53030 4.63202 4.72715 4.85209 4.95899 5.05711 5.17211 5.23586 5.26890 5.40342 5.47779 5.50742 5.62415 5.68738 5.76738 5.81790 5.85216 5.87848 5.94822 6.02466 6.32399 6.65142 7.03700 7.67483 7.77588 7.97802 8.39305 8.49325 8.64251 9.34653 9.68587 10.58183 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037506 B = 0.003808 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.363264 B = 7350.950200 C = 7446.881297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.531 3.469 4 O -0.545 6.545 5 N -0.704 5.704 6 C 0.110 3.890 7 C 0.431 3.569 8 O -0.591 6.591 9 N -0.562 5.562 10 C -0.386 4.386 11 H 0.102 0.898 12 C -0.006 4.006 13 N -0.894 5.894 14 Si 1.095 2.905 15 H -0.283 1.283 16 H -0.280 1.280 17 H -0.283 1.283 18 C -0.093 4.093 19 C -0.167 4.167 20 C 0.059 3.941 21 O -0.375 6.375 22 C 0.072 3.928 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.409 0.591 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.379 0.621 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -17.581 -7.214 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C 0.317 3.683 4 O -0.423 6.423 5 N -0.357 5.357 6 C -0.018 4.018 7 C 0.217 3.783 8 O -0.477 6.477 9 N -0.198 5.198 10 C -0.516 4.516 11 H 0.120 0.880 12 C -0.209 4.209 13 N -0.532 5.532 14 Si 0.921 3.079 15 H -0.210 1.210 16 H -0.205 1.205 17 H -0.208 1.208 18 C -0.131 4.131 19 C -0.205 4.205 20 C -0.018 4.018 21 O -0.294 6.294 22 C -0.005 4.005 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.247 0.753 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.213 0.787 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.072 -16.090 -6.344 17.329 hybrid contribution -0.084 -1.435 -1.156 1.845 sum -1.156 -17.526 -7.500 19.098 Atomic orbital electron populations 1.21807 0.91695 1.03002 1.03401 1.21499 0.97822 0.93593 0.99053 1.20115 0.79903 0.86677 0.81592 1.90605 1.38194 1.77106 1.36360 1.45651 1.53175 1.11416 1.25486 1.20926 0.99894 0.82760 0.98236 1.19669 0.86610 0.83383 0.88588 1.90493 1.42673 1.66184 1.48335 1.41866 1.45597 1.09710 1.22622 1.20607 1.32822 0.97077 1.01051 0.88021 1.26594 0.96085 0.93750 1.04504 1.70867 1.31972 1.39052 1.11332 0.83076 0.76096 0.75756 0.73005 1.20967 1.20533 1.20838 1.21435 0.95891 0.99376 0.96408 1.22416 0.96238 1.04155 0.97679 1.22634 0.99086 0.94137 0.85934 1.88011 1.19553 1.76431 1.45372 1.22662 0.81742 0.99657 0.96453 0.91535 0.91249 0.91354 0.75282 0.90030 0.89935 0.78742 0.92503 0.91450 0.90664 0.88446 0.91162 0.88987 0.93473 0.88218 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.38 37.16 0.31 -1.05 16 2 C -0.12 -1.37 0.63 -155.52 -0.10 -1.47 16 3 C 0.53 8.44 5.91 -10.99 -0.06 8.37 16 4 O -0.54 -10.04 13.84 5.56 0.08 -9.96 16 5 N -0.70 -11.94 5.30 -61.48 -0.33 -12.26 16 6 C 0.11 2.06 6.15 -5.19 -0.03 2.03 16 7 C 0.43 10.02 7.85 -10.98 -0.09 9.93 16 8 O -0.59 -15.29 15.24 5.55 0.08 -15.21 16 9 N -0.56 -13.97 5.28 -10.96 -0.06 -14.03 16 10 C -0.39 -10.66 9.68 -14.93 -0.14 -10.81 16 11 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 12 C -0.01 -0.16 5.50 -17.47 -0.10 -0.25 16 13 N -0.89 -24.76 13.68 55.50 0.76 -24.00 16 14 Si 1.10 23.82 29.92 -169.99 -5.09 18.73 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 C -0.09 -1.00 4.47 -26.48 -0.12 -1.12 16 19 C -0.17 -1.89 5.82 -26.52 -0.15 -2.04 16 20 C 0.06 0.63 6.84 37.21 0.25 0.88 16 21 O -0.38 -5.11 10.45 -35.23 -0.37 -5.48 16 22 C 0.07 0.82 5.46 37.20 0.20 1.02 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.68 7.57 -51.93 -0.39 0.28 16 26 H 0.41 6.81 6.26 -40.82 -0.26 6.56 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.38 8.77 6.73 -40.82 -0.27 8.49 16 30 H 0.26 7.04 6.78 -40.82 -0.28 6.76 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.86 8.02 -51.92 -0.42 0.44 16 33 H 0.10 1.42 5.82 -51.93 -0.30 1.12 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 1.15 7.51 -51.93 -0.39 0.76 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -32.78 310.86 -5.54 -38.32 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -5.28 Total: 13.69 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.02 Total: 5.51 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.38 Total: -50.29 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.21 Total: -30.65 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.09 Total: 18.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.78 -5.54 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344151461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.025 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds