Wall clock time and date at job start Mon Mar 30 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.52230 * 2 1 4 4 O 1.21281 * 119.99862 * 239.99953 * 3 2 1 5 5 N 1.34772 * 120.00198 * 60.00226 * 3 2 1 6 6 C 1.46496 * 120.00214 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.47522 * 180.02562 * 6 5 3 8 8 O 1.21290 * 119.99426 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00461 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99876 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00219 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99507 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00525 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99679 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00437 * 14 12 10 16 16 H 1.48503 * 109.47399 * 209.99926 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00533 * 14 12 10 18 18 C 1.53180 * 109.52132 * 239.87062 * 2 1 3 19 19 C 1.53309 * 108.96634 * 183.10712 * 18 2 1 20 20 C 1.53101 * 109.19226 * 56.94885 * 19 18 2 21 21 O 1.42902 * 109.41374 * 302.38917 * 20 19 18 22 22 C 1.42905 * 114.09912 * 61.15518 * 21 20 19 23 23 H 1.09001 * 109.46911 * 60.00060 * 1 2 3 24 24 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46794 * 299.99749 * 1 2 3 26 26 H 0.97006 * 120.00264 * 359.97438 * 5 3 2 27 27 H 1.08997 * 109.47383 * 59.99971 * 6 5 3 28 28 H 1.09004 * 109.47443 * 299.99916 * 6 5 3 29 29 H 0.96998 * 119.99373 * 0.02562 * 9 7 6 30 30 H 0.97000 * 119.99509 * 359.97438 * 13 12 10 31 31 H 1.08993 * 109.54957 * 302.92058 * 18 2 1 32 32 H 1.09010 * 109.54044 * 63.18473 * 18 2 1 33 33 H 1.08998 * 109.50948 * 297.03445 * 19 18 2 34 34 H 1.09000 * 109.55750 * 176.89129 * 19 18 2 35 35 H 1.08996 * 109.47743 * 182.40940 * 20 19 18 36 36 H 1.08997 * 109.47821 * 62.37297 * 20 19 18 37 37 H 1.08993 * 109.48158 * 178.85533 * 22 21 20 38 38 H 1.09007 * 109.48447 * 58.83144 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4203 0.0000 4 8 2.7312 1.8163 -0.9096 5 7 1.7088 2.2505 1.0108 6 6 2.1988 3.6310 1.0111 7 6 1.6976 4.3418 2.2418 8 8 0.9993 3.7531 3.0399 9 7 2.0244 5.6319 2.4552 10 6 1.5680 6.2785 3.5745 11 1 0.9462 5.7543 4.2852 12 6 1.9053 7.6083 3.7947 13 7 2.6615 8.2463 2.9298 14 14 1.2829 8.4897 5.3195 15 1 2.2601 8.3175 6.4243 16 1 1.1200 9.9358 5.0237 17 1 -0.0263 7.9164 5.7229 18 6 2.0419 -0.7247 -1.2487 19 6 3.5729 -0.7856 -1.1970 20 6 4.0056 -1.4795 0.0973 21 8 3.4695 -0.7724 1.2175 22 6 2.0416 -0.7242 1.2480 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.1506 1.9339 1.7382 27 1 1.8364 4.1454 0.1211 28 1 3.2889 3.6298 1.0114 29 1 2.5819 6.1029 1.8163 30 1 2.9844 7.7887 2.1378 31 1 1.6376 -1.7366 -1.2746 32 1 1.7269 -0.1820 -2.1401 33 1 3.9784 0.2259 -1.2212 34 1 3.9448 -1.3477 -2.0536 35 1 5.0938 -1.4872 0.1592 36 1 3.6337 -2.5040 0.1022 37 1 1.7150 -0.1880 2.1390 38 1 1.6439 -1.7389 1.2682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344151461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:27 Heat of formation + Delta-G solvation = -157.308922 kcal Electronic energy + Delta-G solvation = -21305.101017 eV Core-core repulsion = 17953.005427 eV Total energy + Delta-G solvation = -3352.095590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.90701 -40.46562 -39.14540 -36.65854 -35.59502 -35.44494 -33.32144 -32.97842 -29.31427 -27.92585 -26.41464 -26.02945 -24.16958 -22.59190 -21.72076 -20.72492 -20.08823 -18.55266 -17.53438 -17.47522 -17.01126 -16.82171 -16.65171 -16.33621 -15.91623 -15.52546 -15.44579 -15.08566 -14.94750 -14.21705 -13.89977 -13.61399 -13.40846 -13.39434 -13.22746 -13.01804 -12.91806 -12.80665 -11.99854 -11.97398 -11.91922 -11.60131 -11.58693 -11.49979 -10.79876 -10.64083 -10.42920 -10.23297 -10.15143 -8.98701 -6.14496 1.44929 1.54930 1.55765 1.82107 1.87561 1.96695 2.42320 2.89805 2.96478 3.11311 3.45521 3.57395 3.77846 3.89632 3.99905 4.10643 4.22831 4.28412 4.29754 4.45355 4.50639 4.66275 4.69420 4.71784 4.84216 4.90932 5.00952 5.13724 5.19132 5.23691 5.46763 5.56407 5.87519 6.20603 6.43564 6.45634 6.60206 7.12998 7.32108 7.71574 8.47955 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037506 B = 0.003808 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.363264 B = 7350.950200 C = 7446.881297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.526 3.474 4 O -0.573 6.573 5 N -0.707 5.707 6 C 0.122 3.878 7 C 0.438 3.562 8 O -0.616 6.616 9 N -0.573 5.573 10 C -0.413 4.413 11 H 0.081 0.919 12 C -0.039 4.039 13 N -0.912 5.912 14 Si 1.138 2.862 15 H -0.270 1.270 16 H -0.274 1.274 17 H -0.273 1.273 18 C -0.092 4.092 19 C -0.167 4.167 20 C 0.055 3.945 21 O -0.407 6.407 22 C 0.069 3.931 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.411 0.589 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.386 0.614 30 H 0.260 0.740 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 -19.403 -7.366 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C 0.314 3.686 4 O -0.453 6.453 5 N -0.361 5.361 6 C -0.006 4.006 7 C 0.225 3.775 8 O -0.504 6.504 9 N -0.210 5.210 10 C -0.542 4.542 11 H 0.099 0.901 12 C -0.238 4.238 13 N -0.550 5.550 14 Si 0.957 3.043 15 H -0.195 1.195 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.130 4.130 19 C -0.205 4.205 20 C -0.021 4.021 21 O -0.327 6.327 22 C -0.008 4.008 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.249 0.751 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.221 0.779 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.724 -17.940 -6.524 19.167 hybrid contribution 0.152 -0.952 -1.175 1.520 sum -1.572 -18.892 -7.699 20.461 Atomic orbital electron populations 1.21832 0.89817 1.05043 1.02904 1.21581 0.99196 0.90439 1.00179 1.21008 0.79036 0.88153 0.80430 1.90598 1.39375 1.78012 1.37303 1.45726 1.53489 1.10712 1.26185 1.20731 1.00026 0.83743 0.96095 1.20372 0.85143 0.82823 0.89167 1.90470 1.43535 1.66714 1.49636 1.41907 1.46245 1.10392 1.22503 1.20629 1.33748 0.97815 1.01968 0.90055 1.27943 0.95318 0.94118 1.06386 1.70942 1.32928 1.39356 1.11819 0.82572 0.76344 0.75014 0.70338 1.19542 1.19851 1.19821 1.21498 0.95428 1.00917 0.95158 1.22372 0.96783 1.02248 0.99057 1.22795 0.99422 0.95175 0.84674 1.87969 1.20839 1.77249 1.46596 1.22806 0.80967 1.01374 0.95645 0.91997 0.87935 0.91939 0.75062 0.88871 0.89435 0.77938 0.92893 0.87892 0.91755 0.92447 0.89051 0.88770 0.90500 0.89066 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.38 71.98 0.60 -1.71 16 2 C -0.11 -2.40 0.63 -52.84 -0.03 -2.43 16 3 C 0.53 16.49 5.91 87.66 0.52 17.00 16 4 O -0.57 -21.28 13.84 -3.03 -0.04 -21.32 16 5 N -0.71 -23.93 5.30 -466.80 -2.48 -26.40 16 6 C 0.12 4.61 6.15 85.64 0.53 5.13 16 7 C 0.44 20.58 7.85 87.66 0.69 21.27 16 8 O -0.62 -32.32 15.24 -3.06 -0.05 -32.37 16 9 N -0.57 -29.01 5.28 -306.98 -1.62 -30.63 16 10 C -0.41 -23.13 9.68 84.04 0.81 -22.32 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.04 -2.07 5.50 84.93 0.47 -1.60 16 13 N -0.91 -50.64 13.68 21.66 0.30 -50.35 16 14 Si 1.14 47.49 29.92 68.60 2.05 49.55 16 15 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 C -0.09 -1.74 4.47 30.76 0.14 -1.60 16 19 C -0.17 -3.49 5.82 30.73 0.18 -3.32 16 20 C 0.06 1.07 6.84 72.02 0.49 1.56 16 21 O -0.41 -10.49 10.45 -148.98 -1.56 -12.05 16 22 C 0.07 1.41 5.46 72.01 0.39 1.80 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.12 7.57 -2.39 -0.02 1.11 16 26 H 0.41 13.67 6.26 -92.70 -0.58 13.09 16 27 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 29 H 0.39 18.23 6.73 -92.71 -0.62 17.60 16 30 H 0.26 14.07 6.78 -92.71 -0.63 13.44 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.36 8.02 -2.38 -0.02 1.34 16 33 H 0.06 1.68 5.82 -2.39 -0.01 1.67 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.99 7.51 -2.39 -0.02 1.97 16 38 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -71.35 310.86 1.42 -69.94 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: 0.02 Total: 39.85 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 4.79 Total: 13.79 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.80 Total: -107.38 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: -1.65 Total: -65.74 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.05 Total: 49.55 kcal Total: -71.35 1.42 -69.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344151461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.373 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds