Wall clock time and date at job start Mon Mar 30 2020 01:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08998 * 109.82549 * 54.11188 * 3 2 1 5 5 C 1.54379 * 109.82800 * 175.00005 * 3 2 1 6 6 C 1.55309 * 102.25540 * 140.86666 * 5 3 2 7 7 C 1.54951 * 100.94153 * 325.86821 * 6 5 3 8 8 H 1.08999 * 110.30791 * 277.52506 * 7 6 5 9 9 C 1.50693 * 110.31059 * 155.45549 * 7 6 5 10 10 O 1.21284 * 119.99840 * 244.99833 * 9 7 6 11 11 N 1.34772 * 120.00023 * 65.00194 * 9 7 6 12 12 C 1.46503 * 119.99962 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.46950 * 179.97438 * 12 11 9 14 14 O 1.21285 * 120.00012 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99927 * 180.02562 * 13 12 11 16 16 C 1.37095 * 120.00144 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99966 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99957 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00235 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99887 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46717 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46854 * 119.99764 * 20 18 16 23 23 H 1.48497 * 109.46942 * 239.99986 * 20 18 16 24 24 O 1.43236 * 109.82871 * 293.13179 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.08994 * 110.85092 * 259.05563 * 5 3 2 31 31 H 1.09005 * 110.85164 * 22.47914 * 5 3 2 32 32 H 1.08995 * 111.12214 * 83.78244 * 6 5 3 33 33 H 1.08995 * 111.12934 * 207.94443 * 6 5 3 34 34 H 0.97001 * 120.00185 * 359.97438 * 11 9 7 35 35 H 1.08995 * 109.47308 * 299.99405 * 12 11 9 36 36 H 1.09000 * 109.47189 * 59.99823 * 12 11 9 37 37 H 0.97004 * 120.00156 * 0.02562 * 15 13 12 38 38 H 0.97002 * 120.00182 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9914 0.8307 5 6 3.5785 1.4540 0.1266 6 6 3.9799 2.6053 -0.8354 7 6 2.8994 2.4588 -1.9364 8 1 3.1864 1.6842 -2.6474 9 6 2.6964 3.7715 -2.6480 10 8 1.6331 4.3490 -2.5635 11 7 3.6962 4.3039 -3.3782 12 6 3.4986 5.5798 -4.0705 13 6 4.7589 5.9512 -4.8087 14 8 5.7269 5.2221 -4.7609 15 7 4.8105 7.0941 -5.5212 16 6 5.9568 7.4317 -6.1932 17 1 6.8183 6.7817 -6.1520 18 6 6.0102 8.6102 -6.9274 19 7 4.9618 9.4009 -6.9780 20 14 7.5719 9.0699 -7.8437 21 1 8.5995 8.0197 -7.6282 22 1 7.2785 9.1858 -9.2947 23 1 8.0792 10.3698 -7.3358 24 8 1.7028 2.0770 -1.2391 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8820 1.6792 1.1489 31 1 4.0019 0.5047 -0.2018 32 1 3.9076 3.5738 -0.3406 33 1 4.9788 2.4475 -1.2418 34 1 4.5467 3.8422 -3.4455 35 1 2.6764 5.4849 -4.7797 36 1 3.2625 6.3556 -3.3421 37 1 4.0366 7.6777 -5.5586 38 1 4.9990 10.2234 -7.4908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344158789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:57 Heat of formation + Delta-G solvation = -134.109126 kcal Electronic energy + Delta-G solvation = -20394.220674 eV Core-core repulsion = 17043.131102 eV Total energy + Delta-G solvation = -3351.089572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38360 -38.89210 -37.91309 -34.48601 -33.77285 -33.70352 -32.30036 -31.40174 -29.38501 -27.29776 -24.85328 -23.90869 -22.09332 -21.23036 -20.04529 -19.58225 -18.17976 -17.73683 -16.82723 -16.08398 -15.63780 -15.22647 -15.07775 -14.58854 -14.37980 -14.19279 -14.03742 -13.64471 -13.36409 -13.23165 -13.08585 -12.31649 -12.15453 -12.03549 -11.89607 -11.67460 -11.64492 -11.18419 -11.15681 -11.10603 -10.91276 -10.42530 -10.34357 -10.00084 -9.66845 -9.35778 -8.82328 -8.65913 -8.12372 -6.53394 -3.95531 2.74664 2.98735 3.08895 3.21396 3.28061 3.71597 3.84764 4.09682 4.21867 4.41910 4.64357 4.83049 4.85726 4.87199 4.92848 5.11669 5.15047 5.18634 5.24069 5.46941 5.54368 5.60478 5.65590 5.73450 5.80670 5.89201 5.94400 6.02073 6.04862 6.12749 6.63030 6.82300 7.44352 7.77838 7.90104 8.40703 8.44814 9.02581 9.37177 9.84707 10.63532 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.054177 B = 0.003041 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.695783 B = 9204.723656 C = 9541.733355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.149 4.149 6 C -0.147 4.147 7 C 0.067 3.933 8 H 0.097 0.903 9 C 0.510 3.490 10 O -0.530 6.530 11 N -0.705 5.705 12 C 0.110 3.890 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 O -0.346 6.346 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.411 0.589 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -14.692 12.750 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.005 3.995 8 H 0.114 0.886 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.361 5.361 12 C -0.018 4.018 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.183 5.183 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 O -0.264 6.264 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.248 0.752 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.394 -14.517 12.652 19.752 hybrid contribution 0.843 0.482 -0.522 1.102 sum -3.551 -14.035 12.130 18.887 Atomic orbital electron populations 1.21715 0.95219 1.01300 1.02551 1.21907 0.97130 0.95608 1.02331 1.22878 0.94316 0.93585 0.87427 0.90062 1.23188 0.95236 0.99295 1.00988 1.23258 0.99210 1.00229 0.95751 1.22765 0.86429 0.94792 0.95474 0.88573 1.20343 0.84133 0.86603 0.79447 1.90708 1.25945 1.62161 1.61760 1.45607 1.16923 1.23467 1.50071 1.20961 0.97900 0.86096 0.96834 1.19721 0.89240 0.84339 0.85290 1.90489 1.37756 1.52717 1.67506 1.41808 1.15538 1.18716 1.42286 1.19778 0.92772 1.05439 1.25433 0.87604 1.25337 0.98871 0.95776 0.97764 1.69620 1.29405 1.13092 1.41301 0.85755 0.80941 0.78562 0.78815 1.19124 1.20589 1.20602 1.88558 1.27358 1.77864 1.32609 0.92889 0.91763 0.92996 0.91416 0.91075 0.89672 0.89991 0.89634 0.88673 0.75162 0.89762 0.89804 0.77008 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.83 37.16 0.37 -0.94 16 2 C -0.13 -1.08 5.50 -26.73 -0.15 -1.23 16 3 C 0.08 0.74 3.51 -26.01 -0.09 0.65 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.17 6.55 -24.78 -0.16 -1.33 16 6 C -0.15 -1.43 6.55 -24.48 -0.16 -1.59 16 7 C 0.07 0.84 3.86 -26.86 -0.10 0.73 16 8 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 9 C 0.51 8.37 7.19 -10.99 -0.08 8.29 16 10 O -0.53 -10.75 16.55 -13.75 -0.23 -10.98 16 11 N -0.70 -11.63 5.51 -61.47 -0.34 -11.97 16 12 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 13 C 0.43 9.72 7.85 -10.98 -0.09 9.64 16 14 O -0.60 -15.03 15.24 5.55 0.08 -14.95 16 15 N -0.55 -13.54 5.29 -10.96 -0.06 -13.59 16 16 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 17 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.82 13.05 55.50 0.72 -23.09 16 20 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 O -0.35 -4.77 9.91 -54.53 -0.54 -5.31 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.53 7.85 -51.93 -0.41 0.13 16 32 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.41 6.45 7.44 -40.82 -0.30 6.14 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -32.07 324.60 -6.82 -38.89 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.60 Total: 12.31 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.74 Total: 8.42 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.33 Total: -48.66 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.68 Total: -31.23 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.07 -6.82 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344158789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.217 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds