Wall clock time and date at job start Mon Mar 30 2020 01:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08998 * 109.82549 * 54.11188 * 3 2 1 5 5 C 1.54379 * 109.82800 * 175.00005 * 3 2 1 6 6 C 1.55309 * 102.25540 * 140.86666 * 5 3 2 7 7 C 1.54951 * 100.94153 * 325.86821 * 6 5 3 8 8 H 1.08999 * 110.30791 * 277.52506 * 7 6 5 9 9 C 1.50693 * 110.31059 * 155.45549 * 7 6 5 10 10 O 1.21284 * 119.99840 * 244.99833 * 9 7 6 11 11 N 1.34772 * 120.00023 * 65.00194 * 9 7 6 12 12 C 1.46503 * 119.99962 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.46950 * 179.97438 * 12 11 9 14 14 O 1.21285 * 120.00012 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99927 * 180.02562 * 13 12 11 16 16 C 1.37095 * 120.00144 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99966 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99957 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00235 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99887 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46717 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46854 * 119.99764 * 20 18 16 23 23 H 1.48497 * 109.46942 * 239.99986 * 20 18 16 24 24 O 1.43236 * 109.82871 * 293.13179 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.08994 * 110.85092 * 259.05563 * 5 3 2 31 31 H 1.09005 * 110.85164 * 22.47914 * 5 3 2 32 32 H 1.08995 * 111.12214 * 83.78244 * 6 5 3 33 33 H 1.08995 * 111.12934 * 207.94443 * 6 5 3 34 34 H 0.97001 * 120.00185 * 359.97438 * 11 9 7 35 35 H 1.08995 * 109.47308 * 299.99405 * 12 11 9 36 36 H 1.09000 * 109.47189 * 59.99823 * 12 11 9 37 37 H 0.97004 * 120.00156 * 0.02562 * 15 13 12 38 38 H 0.97002 * 120.00182 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9914 0.8307 5 6 3.5785 1.4540 0.1266 6 6 3.9799 2.6053 -0.8354 7 6 2.8994 2.4588 -1.9364 8 1 3.1864 1.6842 -2.6474 9 6 2.6964 3.7715 -2.6480 10 8 1.6331 4.3490 -2.5635 11 7 3.6962 4.3039 -3.3782 12 6 3.4986 5.5798 -4.0705 13 6 4.7589 5.9512 -4.8087 14 8 5.7269 5.2221 -4.7609 15 7 4.8105 7.0941 -5.5212 16 6 5.9568 7.4317 -6.1932 17 1 6.8183 6.7817 -6.1520 18 6 6.0102 8.6102 -6.9274 19 7 4.9618 9.4009 -6.9780 20 14 7.5719 9.0699 -7.8437 21 1 8.5995 8.0197 -7.6282 22 1 7.2785 9.1858 -9.2947 23 1 8.0792 10.3698 -7.3358 24 8 1.7028 2.0770 -1.2391 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8820 1.6792 1.1489 31 1 4.0019 0.5047 -0.2018 32 1 3.9076 3.5738 -0.3406 33 1 4.9788 2.4475 -1.2418 34 1 4.5467 3.8422 -3.4455 35 1 2.6764 5.4849 -4.7797 36 1 3.2625 6.3556 -3.3421 37 1 4.0366 7.6777 -5.5586 38 1 4.9990 10.2234 -7.4908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344158789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:57 Heat of formation + Delta-G solvation = -157.094365 kcal Electronic energy + Delta-G solvation = -20395.217388 eV Core-core repulsion = 17043.131102 eV Total energy + Delta-G solvation = -3352.086287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49235 -40.37736 -39.42414 -36.27324 -35.37374 -34.49217 -33.40829 -33.12145 -30.48262 -28.67657 -26.51145 -25.00953 -22.84389 -22.10614 -21.41617 -21.15211 -20.08296 -18.96677 -17.91341 -17.48686 -16.94691 -16.74370 -16.51162 -16.25561 -15.79856 -15.37289 -15.18802 -15.00949 -14.43846 -14.03867 -13.99505 -13.89124 -13.61075 -13.55569 -13.04968 -12.91418 -12.78695 -12.45096 -12.40098 -12.10916 -11.88350 -11.78604 -11.59347 -11.58561 -11.07504 -10.58538 -10.43776 -10.25754 -10.09835 -8.51838 -6.02164 1.34742 1.42925 1.47226 1.56845 1.77126 1.89375 2.28988 2.90789 3.11326 3.15397 3.41430 3.63963 3.77026 4.00646 4.09647 4.19411 4.24035 4.32241 4.39145 4.42193 4.47673 4.55532 4.82822 4.86473 4.96230 4.99503 5.09396 5.14229 5.20429 5.35015 5.38095 5.44163 5.90550 5.97608 6.43947 6.49859 7.02463 7.10745 7.43040 7.92464 8.65362 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.054177 B = 0.003041 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.695783 B = 9204.723656 C = 9541.733355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.065 3.935 4 H 0.077 0.923 5 C -0.137 4.137 6 C -0.144 4.144 7 C 0.067 3.933 8 H 0.119 0.881 9 C 0.510 3.490 10 O -0.574 6.574 11 N -0.700 5.700 12 C 0.120 3.880 13 C 0.435 3.565 14 O -0.621 6.621 15 N -0.560 5.560 16 C -0.335 4.335 17 H 0.088 0.912 18 C -0.012 4.012 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.271 1.271 24 O -0.378 6.378 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.416 0.584 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.398 0.602 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -15.880 13.492 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.008 3.992 4 H 0.095 0.905 5 C -0.175 4.175 6 C -0.182 4.182 7 C 0.007 3.993 8 H 0.137 0.863 9 C 0.297 3.703 10 O -0.453 6.453 11 N -0.356 5.356 12 C -0.008 4.008 13 C 0.222 3.778 14 O -0.509 6.509 15 N -0.195 5.195 16 C -0.465 4.465 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.197 1.197 24 O -0.297 6.297 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.255 0.745 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.232 0.768 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.392 -15.722 13.409 20.940 hybrid contribution 0.466 0.817 -0.704 1.175 sum -2.926 -14.905 12.705 19.802 Atomic orbital electron populations 1.21723 0.96043 1.01810 1.01353 1.21907 0.96404 0.94643 1.03554 1.23129 0.96080 0.94204 0.85804 0.90491 1.23194 0.93372 0.99327 1.01582 1.23294 0.99133 1.00594 0.95205 1.22872 0.87207 0.92754 0.96490 0.86348 1.21122 0.83049 0.87550 0.78620 1.90683 1.27600 1.63704 1.63279 1.45583 1.17382 1.22730 1.49870 1.20783 0.95582 0.87464 0.96923 1.20328 0.90065 0.83220 0.84192 1.90466 1.39157 1.53225 1.68061 1.41865 1.15221 1.19514 1.42941 1.19785 0.93226 1.06188 1.27273 0.89401 1.26154 1.01903 0.95198 0.97986 1.69687 1.30902 1.13440 1.41714 0.84799 0.77116 0.78251 0.77745 1.19268 1.19704 1.19670 1.88537 1.28505 1.78420 1.34224 0.92701 0.94354 0.91630 0.91344 0.88523 0.87796 0.87957 0.90917 0.86785 0.74475 0.88998 0.88902 0.76756 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.83 71.98 0.71 -1.78 16 2 C -0.13 -1.80 5.50 30.59 0.17 -1.63 16 3 C 0.06 1.16 3.51 31.06 0.11 1.27 16 4 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.14 -1.72 6.55 31.86 0.21 -1.51 16 6 C -0.14 -2.51 6.55 32.05 0.21 -2.30 16 7 C 0.07 1.61 3.86 30.51 0.12 1.73 16 8 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 9 C 0.51 16.54 7.19 87.66 0.63 17.17 16 10 O -0.57 -23.54 16.55 15.41 0.26 -23.29 16 11 N -0.70 -22.68 5.51 -466.79 -2.57 -25.25 16 12 C 0.12 4.42 6.15 85.63 0.53 4.95 16 13 C 0.43 19.82 7.85 87.66 0.69 20.51 16 14 O -0.62 -31.28 15.24 -3.05 -0.05 -31.33 16 15 N -0.56 -27.98 5.29 -306.99 -1.62 -29.60 16 16 C -0.34 -18.32 9.68 84.04 0.81 -17.51 16 17 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 18 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 19 N -0.92 -48.72 13.05 21.66 0.28 -48.43 16 20 Si 1.00 41.43 29.55 68.60 2.03 43.45 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 24 O -0.38 -10.19 9.91 -130.53 -1.29 -11.48 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.04 0.81 7.90 -2.39 -0.02 0.79 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.91 7.85 -2.38 -0.02 0.89 16 32 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.42 12.67 7.44 -92.71 -0.69 11.98 16 35 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 38 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -69.34 324.60 1.33 -68.00 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.34 Total: 37.18 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 4.65 Total: 20.75 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -3.91 Total: -103.29 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: -1.08 Total: -66.10 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -69.34 1.33 -68.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344158789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.089 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds