Wall clock time and date at job start Mon Mar 30 2020 01:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47153 * 2 1 4 4 H 1.09004 * 110.32779 * 52.75573 * 3 2 1 5 5 C 1.54478 * 110.37213 * 175.00031 * 3 2 1 6 6 C 1.54510 * 104.06500 * 142.81344 * 5 3 2 7 7 C 1.54477 * 104.18108 * 359.93120 * 6 5 3 8 8 H 1.09006 * 110.37498 * 94.92285 * 7 6 5 9 9 C 1.50701 * 110.37389 * 217.25757 * 7 6 5 10 10 O 1.21277 * 119.99743 * 115.00110 * 9 7 6 11 11 N 1.34779 * 119.99852 * 295.00399 * 9 7 6 12 12 C 1.46502 * 119.99457 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.46592 * 180.02562 * 12 11 9 14 14 O 1.21292 * 120.00125 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99698 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99858 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00010 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99797 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99683 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00287 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47282 * 89.99213 * 20 18 16 22 22 H 1.48498 * 109.47404 * 209.99517 * 20 18 16 23 23 H 1.48506 * 109.47004 * 329.99703 * 20 18 16 24 24 O 1.44415 * 110.37805 * 290.38354 * 3 2 1 25 25 H 1.08996 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46415 * 299.99352 * 1 2 3 27 27 H 1.08996 * 109.46823 * 59.99435 * 1 2 3 28 28 H 1.09002 * 109.46937 * 240.00270 * 2 1 3 29 29 H 1.08994 * 109.47306 * 120.00762 * 2 1 3 30 30 H 1.09000 * 110.51268 * 24.16771 * 5 3 2 31 31 H 1.09007 * 110.63128 * 261.51589 * 5 3 2 32 32 H 1.09002 * 110.51305 * 118.64650 * 6 5 3 33 33 H 1.08994 * 110.51141 * 241.21979 * 6 5 3 34 34 H 0.96998 * 120.00393 * 359.97438 * 11 9 7 35 35 H 1.08996 * 109.47041 * 299.99420 * 12 11 9 36 36 H 1.08992 * 109.47530 * 60.00031 * 12 11 9 37 37 H 0.97000 * 119.99737 * 359.97438 * 15 13 12 38 38 H 0.97001 * 119.99771 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5830 2.0057 0.8137 5 6 3.5794 1.4686 0.1262 6 6 4.0108 2.6420 -0.7818 7 6 2.6827 3.1871 -1.3522 8 1 2.3240 4.0207 -0.7483 9 6 2.8641 3.6161 -2.7854 10 8 2.2762 3.0335 -3.6718 11 7 3.6799 4.6472 -3.0821 12 6 3.8558 5.0645 -4.4753 13 6 4.8110 6.2287 -4.5341 14 8 5.2967 6.6669 -3.5127 15 7 5.1257 6.7829 -5.7217 16 6 5.9943 7.8422 -5.7752 17 1 6.4267 8.2324 -4.8657 18 6 6.3191 8.4132 -6.9996 19 7 7.1521 9.4283 -7.0509 20 14 5.5717 7.7380 -8.5727 21 1 4.2990 8.4471 -8.8603 22 1 6.5182 7.9434 -9.6984 23 1 5.3036 6.2864 -8.4100 24 8 1.7631 2.0737 -1.2690 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.0079 0.5320 -0.2307 31 1 3.8771 1.6548 1.1582 32 1 4.5195 3.4094 -0.1983 33 1 4.6543 2.2859 -1.5861 34 1 4.1499 5.1134 -2.3731 35 1 4.2592 4.2344 -5.0551 36 1 2.8928 5.3630 -4.8896 37 1 4.7375 6.4321 -6.5386 38 1 7.3785 9.8271 -7.9056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344158791.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:00 Heat of formation + Delta-G solvation = -151.366515 kcal Electronic energy + Delta-G solvation = -20426.608536 eV Core-core repulsion = 17074.770627 eV Total energy + Delta-G solvation = -3351.837908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48553 -40.46236 -39.44545 -36.31930 -35.41461 -34.56145 -33.84971 -33.09506 -30.53756 -28.75190 -26.39558 -24.98203 -22.83578 -21.95270 -21.49928 -21.42914 -20.54893 -18.70295 -17.69615 -17.54685 -17.22651 -16.74119 -16.69361 -16.28930 -15.82035 -15.30026 -15.01864 -14.71381 -14.53583 -14.48362 -14.24464 -14.03312 -13.98570 -13.68480 -12.99084 -12.88765 -12.68952 -12.45636 -12.37255 -12.01371 -11.89114 -11.71845 -11.59243 -11.51731 -11.05512 -10.71159 -10.65739 -10.35517 -10.24846 -8.46539 -6.08448 1.30284 1.33279 1.42909 1.45310 1.72521 1.77657 2.19503 2.78399 3.02350 3.09722 3.44700 3.59049 3.88654 3.91516 3.98512 4.14645 4.19369 4.32633 4.36910 4.38477 4.40735 4.58550 4.76383 4.90051 4.94814 5.01106 5.09429 5.15114 5.16627 5.23332 5.43886 5.47115 5.82487 5.87049 6.42679 6.47276 6.76926 7.07015 7.28093 7.75912 8.69762 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.046558 B = 0.003233 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.261088 B = 8657.372652 C = 9067.433073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.062 3.938 4 H 0.087 0.913 5 C -0.142 4.142 6 C -0.145 4.145 7 C 0.061 3.939 8 H 0.120 0.880 9 C 0.518 3.482 10 O -0.569 6.569 11 N -0.703 5.703 12 C 0.117 3.883 13 C 0.447 3.553 14 O -0.612 6.612 15 N -0.578 5.578 16 C -0.331 4.331 17 H 0.065 0.935 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.234 1.234 24 O -0.373 6.373 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.416 0.584 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.392 0.608 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 -17.847 12.782 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.005 3.995 4 H 0.105 0.895 5 C -0.180 4.180 6 C -0.183 4.183 7 C 0.000 4.000 8 H 0.137 0.863 9 C 0.305 3.695 10 O -0.448 6.448 11 N -0.358 5.358 12 C -0.010 4.010 13 C 0.234 3.766 14 O -0.498 6.498 15 N -0.218 5.218 16 C -0.460 4.460 17 H 0.083 0.917 18 C -0.207 4.207 19 N -0.564 5.564 20 Si 0.778 3.222 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.157 1.157 24 O -0.292 6.292 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.227 0.773 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.517 -17.873 12.544 24.237 hybrid contribution 0.332 0.596 -0.880 1.113 sum -10.185 -17.277 11.664 23.201 Atomic orbital electron populations 1.21736 0.95437 1.02058 1.01643 1.21626 0.96669 0.93792 1.03280 1.23413 0.95306 0.95088 0.85682 0.89481 1.23013 0.94738 0.98600 1.01648 1.22960 0.95219 0.99914 1.00191 1.22923 0.92415 0.92846 0.91831 0.86297 1.20762 0.78075 0.79065 0.91615 1.90686 1.48423 1.55515 1.50162 1.45582 1.47295 1.33901 1.09065 1.20895 0.99568 0.95661 0.84922 1.20417 0.85809 0.86699 0.83679 1.90524 1.58190 1.66231 1.34819 1.41939 1.41817 1.30228 1.07797 1.19034 1.22510 1.08801 0.95637 0.91664 1.26049 0.96643 0.95953 1.02097 1.69776 1.34549 1.23845 1.28278 0.85458 0.79096 0.80461 0.77195 1.18130 1.19816 1.15708 1.89279 1.57267 1.43344 1.39343 0.91735 0.91758 0.94371 0.92418 0.88018 0.90209 0.87398 0.87160 0.91455 0.74492 0.87925 0.87824 0.77255 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.85 71.98 0.71 -1.57 16 2 C -0.12 -1.68 5.56 30.59 0.17 -1.51 16 3 C 0.06 1.02 3.25 31.10 0.10 1.12 16 4 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 5 C -0.14 -1.89 6.63 31.61 0.21 -1.68 16 6 C -0.14 -2.50 6.60 31.61 0.21 -2.29 16 7 C 0.06 1.38 3.72 30.35 0.11 1.49 16 8 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 9 C 0.52 15.69 7.08 87.66 0.62 16.31 16 10 O -0.57 -21.73 16.56 15.25 0.25 -21.48 16 11 N -0.70 -21.12 5.51 -466.79 -2.57 -23.69 16 12 C 0.12 3.82 6.15 85.63 0.53 4.35 16 13 C 0.45 19.13 7.85 87.66 0.69 19.82 16 14 O -0.61 -30.70 15.24 -3.07 -0.05 -30.75 16 15 N -0.58 -26.31 5.09 -306.98 -1.56 -27.88 16 16 C -0.33 -18.59 10.16 84.04 0.85 -17.74 16 17 H 0.07 4.32 7.39 -2.91 -0.02 4.30 16 18 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 19 N -0.92 -53.96 13.96 21.66 0.30 -53.66 16 20 Si 0.96 37.97 27.74 68.60 1.90 39.87 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 24 O -0.37 -9.61 10.41 -130.71 -1.36 -10.97 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.04 0.76 8.01 -2.39 -0.02 0.74 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.06 7.87 -2.39 -0.02 1.04 16 31 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.36 7.86 -2.39 -0.02 1.34 16 34 H 0.42 12.05 7.44 -92.71 -0.69 11.36 16 35 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.39 15.03 5.76 -92.71 -0.53 14.50 16 38 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -75.29 321.65 1.38 -73.91 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.20 Total: 36.27 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 4.67 Total: 18.37 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -3.83 Total: -105.23 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -1.15 Total: -63.20 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -75.29 1.38 -73.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344158791.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.453 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds