Wall clock time and date at job start Mon Mar 30 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99453 * 2 1 4 4 O 1.20822 * 120.00279 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99751 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.27479 * 302.08852 * 5 3 2 7 7 C 1.54594 * 110.30842 * 64.28603 * 5 3 2 8 8 C 1.54933 * 102.92252 * 140.87414 * 7 5 3 9 9 N 1.48534 * 103.22824 * 322.58255 * 8 7 5 10 10 C 1.46901 * 111.00172 * 159.71827 * 9 8 7 11 11 C 1.50701 * 109.46921 * 52.60615 * 10 9 8 12 12 O 1.21294 * 119.99849 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.37101 * 119.99707 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99704 * 359.97438 * 14 13 11 16 16 C 1.38941 * 119.99927 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00180 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00273 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46986 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47457 * 119.99901 * 18 16 14 21 21 H 1.48501 * 109.47104 * 239.99973 * 18 16 14 22 22 C 1.47912 * 105.81750 * 39.20906 * 9 8 7 23 23 H 1.08996 * 109.91557 * 215.32097 * 22 9 8 24 24 C 1.52996 * 109.91463 * 94.02092 * 22 9 8 25 25 H 1.08996 * 109.47377 * 299.99624 * 1 2 3 26 26 H 1.08997 * 109.47302 * 59.99907 * 1 2 3 27 27 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 28 28 H 1.09000 * 110.72253 * 259.22596 * 7 5 3 29 29 H 1.09000 * 110.72653 * 22.51367 * 7 5 3 30 30 H 1.08997 * 110.67236 * 204.14971 * 8 7 5 31 31 H 1.09001 * 110.67169 * 81.02116 * 8 7 5 32 32 H 1.09002 * 109.47401 * 292.60643 * 10 9 8 33 33 H 1.09001 * 109.46874 * 172.60656 * 10 9 8 34 34 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 35 35 H 0.97000 * 119.99884 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.47257 * 61.46129 * 24 22 9 37 37 H 1.09006 * 109.46444 * 181.44930 * 24 22 9 38 38 H 1.08998 * 109.47521 * 301.45272 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9722 0.7522 0.8654 7 6 4.1345 0.6752 -1.3072 8 6 5.3047 1.6319 -1.6474 9 7 4.7802 2.9643 -1.2528 10 6 5.8755 3.9212 -1.0460 11 6 6.7668 3.9346 -2.2611 12 8 6.5142 3.2179 -3.2065 13 7 7.8441 4.7437 -2.2976 14 6 8.6547 4.7563 -3.4033 15 1 8.4301 4.1176 -4.2447 16 6 9.7655 5.5900 -3.4408 17 7 10.0390 6.3668 -2.4167 18 14 10.8696 5.6078 -4.9475 19 1 10.3478 4.6496 -5.9548 20 1 10.8924 6.9741 -5.5285 21 1 12.2468 5.2131 -4.5566 22 6 4.0243 2.7453 -0.0004 23 1 3.1567 3.4044 0.0298 24 6 4.9270 3.0098 1.2062 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 4.5007 -0.3376 -1.1393 29 1 3.3831 0.6889 -2.0967 30 1 5.5252 1.6059 -2.7145 31 1 6.1903 1.3790 -1.0644 32 1 6.4565 3.6252 -0.1725 33 1 5.4625 4.9173 -0.8872 34 1 8.0459 5.3171 -1.5417 35 1 10.8143 6.9491 -2.4431 36 1 5.2605 4.0475 1.1900 37 1 4.3705 2.8215 2.1244 38 1 5.7929 2.3491 1.1641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346684907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:34 Heat of formation + Delta-G solvation = -106.512137 kcal Electronic energy + Delta-G solvation = -21136.396041 eV Core-core repulsion = 17786.503165 eV Total energy + Delta-G solvation = -3349.892877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90660 -39.31392 -37.60355 -36.45651 -33.98127 -32.49936 -31.22263 -30.86020 -28.34444 -26.70919 -25.96490 -24.29169 -22.24317 -21.05720 -19.65314 -18.95597 -17.83871 -17.73989 -16.93628 -16.52613 -16.18072 -15.35649 -14.99120 -14.43872 -14.21417 -13.87722 -13.75190 -13.44246 -13.08131 -12.82325 -12.68967 -12.32736 -12.25924 -11.96981 -11.66431 -11.46904 -11.34792 -11.13120 -10.98157 -10.95857 -10.85328 -10.53972 -10.35258 -10.28541 -10.22582 -9.49400 -8.34723 -7.99301 -7.84959 -6.41915 -3.82669 2.12204 2.56076 3.16322 3.27078 3.34161 3.90093 4.07208 4.26369 4.37483 4.61995 4.75748 4.90377 4.97899 5.03285 5.10912 5.25472 5.27529 5.31257 5.38855 5.49161 5.54537 5.67081 5.83821 5.90958 6.00253 6.03868 6.22021 6.24672 6.26916 6.33872 6.66281 7.25005 7.30990 7.55528 7.64946 8.06412 8.61654 9.18027 9.54033 10.05688 10.75864 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047381 B = 0.003673 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.815434 B = 7620.743155 C = 7926.454021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.501 6.501 5 C -0.090 4.090 6 H 0.112 0.888 7 C -0.112 4.112 8 C 0.036 3.964 9 N -0.488 5.488 10 C 0.029 3.971 11 C 0.442 3.558 12 O -0.581 6.581 13 N -0.562 5.562 14 C -0.298 4.298 15 H 0.104 0.896 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.064 3.936 23 H 0.109 0.891 24 C -0.179 4.179 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 -10.525 8.985 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.388 6.388 5 C -0.110 4.110 6 H 0.130 0.870 7 C -0.150 4.150 8 C -0.091 4.091 9 N -0.211 5.211 10 C -0.102 4.102 11 C 0.228 3.772 12 O -0.466 6.466 13 N -0.198 5.198 14 C -0.428 4.428 15 H 0.122 0.878 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.044 4.044 23 H 0.127 0.873 24 C -0.237 4.237 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.141 0.859 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.177 -10.336 7.954 18.540 hybrid contribution 1.043 0.261 0.566 1.214 sum -12.134 -10.075 8.519 17.926 Atomic orbital electron populations 1.23253 0.76568 1.03535 1.02565 1.86516 1.23248 1.33552 1.84246 1.23619 0.91925 0.81193 0.71795 1.90646 1.66887 1.36261 1.44999 1.22023 0.87267 0.99338 1.02378 0.87021 1.22571 0.98873 0.99244 0.94294 1.23538 0.94001 0.86489 1.05043 1.64872 1.22085 1.08498 1.25686 1.22221 0.92665 0.97909 0.97397 1.19762 0.83485 0.84727 0.89255 1.90430 1.73593 1.44319 1.38290 1.41852 1.22802 1.36920 1.18263 1.19751 1.04423 1.22379 0.96208 0.87827 1.25265 0.98070 0.96081 0.98554 1.69623 1.28778 1.25532 1.30346 0.85802 0.79373 0.78145 0.81037 1.19208 1.20748 1.20798 1.22642 0.98541 0.93658 0.89607 0.87320 1.22467 1.00188 1.02993 0.98083 0.92014 0.91835 0.88204 0.90009 0.90433 0.85906 0.94153 0.92200 0.89165 0.77451 0.91921 0.90973 0.92163 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.05 10.56 -39.26 -0.41 -4.47 16 3 C 0.47 6.18 7.12 36.01 0.26 6.44 16 4 O -0.50 -7.86 14.99 -18.75 -0.28 -8.14 16 5 C -0.09 -1.10 3.13 -90.41 -0.28 -1.39 16 6 H 0.11 1.10 7.68 -51.93 -0.40 0.70 16 7 C -0.11 -1.44 6.60 -24.87 -0.16 -1.60 16 8 C 0.04 0.60 5.29 -1.90 -0.01 0.59 16 9 N -0.49 -8.43 5.25 -224.00 -1.18 -9.61 16 10 C 0.03 0.53 4.49 -4.97 -0.02 0.51 16 11 C 0.44 10.36 7.49 -10.98 -0.08 10.28 16 12 O -0.58 -15.28 13.10 5.55 0.07 -15.21 16 13 N -0.56 -14.18 5.29 -10.96 -0.06 -14.23 16 14 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 15 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 18 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.06 0.90 3.37 -66.64 -0.22 0.68 16 23 H 0.11 1.68 6.42 -51.93 -0.33 1.35 16 24 C -0.18 -2.11 7.60 37.16 0.28 -1.82 16 25 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 30 H 0.12 2.44 5.97 -51.93 -0.31 2.13 16 31 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16 32 H 0.06 0.97 5.66 -51.93 -0.29 0.68 16 33 H 0.09 1.54 8.12 -51.93 -0.42 1.12 16 34 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.07 0.86 6.72 -51.93 -0.35 0.51 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -31.88 312.09 -6.15 -38.03 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.27 Total: 9.59 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 0.58 Total: 7.13 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.51 Total: -47.59 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.62 Total: -27.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.88 -6.15 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346684907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.480 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds