Wall clock time and date at job start Mon Mar 30 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99453 * 2 1 4 4 O 1.20822 * 120.00279 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99751 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.27479 * 302.08852 * 5 3 2 7 7 C 1.54594 * 110.30842 * 64.28603 * 5 3 2 8 8 C 1.54933 * 102.92252 * 140.87414 * 7 5 3 9 9 N 1.48534 * 103.22824 * 322.58255 * 8 7 5 10 10 C 1.46901 * 111.00172 * 159.71827 * 9 8 7 11 11 C 1.50701 * 109.46921 * 52.60615 * 10 9 8 12 12 O 1.21294 * 119.99849 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.37101 * 119.99707 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99704 * 359.97438 * 14 13 11 16 16 C 1.38941 * 119.99927 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00180 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00273 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46986 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47457 * 119.99901 * 18 16 14 21 21 H 1.48501 * 109.47104 * 239.99973 * 18 16 14 22 22 C 1.47912 * 105.81750 * 39.20906 * 9 8 7 23 23 H 1.08996 * 109.91557 * 215.32097 * 22 9 8 24 24 C 1.52996 * 109.91463 * 94.02092 * 22 9 8 25 25 H 1.08996 * 109.47377 * 299.99624 * 1 2 3 26 26 H 1.08997 * 109.47302 * 59.99907 * 1 2 3 27 27 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 28 28 H 1.09000 * 110.72253 * 259.22596 * 7 5 3 29 29 H 1.09000 * 110.72653 * 22.51367 * 7 5 3 30 30 H 1.08997 * 110.67236 * 204.14971 * 8 7 5 31 31 H 1.09001 * 110.67169 * 81.02116 * 8 7 5 32 32 H 1.09002 * 109.47401 * 292.60643 * 10 9 8 33 33 H 1.09001 * 109.46874 * 172.60656 * 10 9 8 34 34 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 35 35 H 0.97000 * 119.99884 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.47257 * 61.46129 * 24 22 9 37 37 H 1.09006 * 109.46444 * 181.44930 * 24 22 9 38 38 H 1.08998 * 109.47521 * 301.45272 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9722 0.7522 0.8654 7 6 4.1345 0.6752 -1.3072 8 6 5.3047 1.6319 -1.6474 9 7 4.7802 2.9643 -1.2528 10 6 5.8755 3.9212 -1.0460 11 6 6.7668 3.9346 -2.2611 12 8 6.5142 3.2179 -3.2065 13 7 7.8441 4.7437 -2.2976 14 6 8.6547 4.7563 -3.4033 15 1 8.4301 4.1176 -4.2447 16 6 9.7655 5.5900 -3.4408 17 7 10.0390 6.3668 -2.4167 18 14 10.8696 5.6078 -4.9475 19 1 10.3478 4.6496 -5.9548 20 1 10.8924 6.9741 -5.5285 21 1 12.2468 5.2131 -4.5566 22 6 4.0243 2.7453 -0.0004 23 1 3.1567 3.4044 0.0298 24 6 4.9270 3.0098 1.2062 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 4.5007 -0.3376 -1.1393 29 1 3.3831 0.6889 -2.0967 30 1 5.5252 1.6059 -2.7145 31 1 6.1903 1.3790 -1.0644 32 1 6.4565 3.6252 -0.1725 33 1 5.4625 4.9173 -0.8872 34 1 8.0459 5.3171 -1.5417 35 1 10.8143 6.9491 -2.4431 36 1 5.2605 4.0475 1.1900 37 1 4.3705 2.8215 2.1244 38 1 5.7929 2.3491 1.1641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346684907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:34 Heat of formation + Delta-G solvation = -129.991336 kcal Electronic energy + Delta-G solvation = -21137.414176 eV Core-core repulsion = 17786.503165 eV Total energy + Delta-G solvation = -3350.911011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95513 -40.69176 -39.20959 -37.47317 -35.96915 -33.79910 -33.17012 -31.99747 -29.34849 -28.08741 -27.02590 -26.09108 -23.30840 -22.32301 -21.04220 -20.47851 -19.72905 -18.77794 -17.94725 -17.78972 -17.49364 -16.74372 -16.50080 -16.13927 -15.64994 -15.57653 -14.94703 -14.46055 -14.28254 -14.06618 -13.93219 -13.75874 -13.50372 -13.18585 -12.99806 -12.93620 -12.71056 -12.45126 -12.37475 -12.27576 -12.10804 -11.88663 -11.80538 -11.74943 -11.45857 -11.35768 -10.15526 -9.99328 -9.24956 -8.45989 -5.94372 1.12444 1.36945 1.42437 1.56486 1.69365 2.04862 2.29267 2.84481 3.20912 3.25617 3.41726 3.64719 3.82177 4.09797 4.20834 4.27260 4.31810 4.33384 4.42624 4.42949 4.44746 4.53084 4.61993 4.71374 4.72719 4.95104 5.06974 5.10281 5.23668 5.28209 5.35476 5.42753 5.87733 5.98892 6.12540 6.61568 6.68957 7.13899 7.56486 8.12339 8.71732 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047381 B = 0.003673 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.815434 B = 7620.743155 C = 7926.454021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.475 3.525 4 O -0.533 6.533 5 C -0.084 4.084 6 H 0.146 0.854 7 C -0.100 4.100 8 C 0.037 3.963 9 N -0.513 5.513 10 C 0.043 3.957 11 C 0.439 3.561 12 O -0.614 6.614 13 N -0.572 5.572 14 C -0.330 4.330 15 H 0.080 0.920 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.993 3.007 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.270 1.270 22 C 0.064 3.936 23 H 0.093 0.907 24 C -0.175 4.175 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 -11.525 10.356 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.319 3.681 4 O -0.423 6.423 5 C -0.104 4.104 6 H 0.163 0.837 7 C -0.138 4.138 8 C -0.090 4.090 9 N -0.237 5.237 10 C -0.088 4.088 11 C 0.227 3.773 12 O -0.500 6.500 13 N -0.209 5.209 14 C -0.460 4.460 15 H 0.098 0.902 16 C -0.213 4.213 17 N -0.562 5.562 18 Si 0.816 3.184 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.195 1.195 22 C -0.044 4.044 23 H 0.111 0.889 24 C -0.233 4.233 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.345 -11.346 9.351 19.857 hybrid contribution 0.980 0.524 0.137 1.120 sum -12.365 -10.822 9.487 18.974 Atomic orbital electron populations 1.23559 0.74862 1.05757 1.02432 1.86502 1.24909 1.32380 1.83639 1.23738 0.92207 0.81231 0.70941 1.90640 1.67607 1.37385 1.46633 1.22033 0.86947 0.98237 1.03139 0.83681 1.22480 0.97078 0.99882 0.94377 1.23346 0.95725 0.87343 1.02610 1.64788 1.21887 1.08760 1.28291 1.22101 0.92402 0.99138 0.95160 1.20740 0.83126 0.83092 0.90381 1.90432 1.74248 1.45217 1.40107 1.41914 1.23405 1.37703 1.17925 1.19696 1.06094 1.23409 0.96788 0.90228 1.26031 0.98741 0.95233 1.01299 1.69682 1.29300 1.25640 1.31581 0.84873 0.77737 0.78232 0.77511 1.19756 1.19789 1.19542 1.22605 0.97938 0.94782 0.89047 0.88892 1.22425 1.00083 1.02996 0.97826 0.91690 0.92509 0.84841 0.86972 0.91508 0.89941 0.93869 0.89678 0.88034 0.77038 0.91332 0.91211 0.89817 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.25 10.56 -51.43 -0.54 -7.80 16 3 C 0.47 11.60 7.12 71.24 0.51 12.11 16 4 O -0.53 -16.29 14.99 21.98 0.33 -15.96 16 5 C -0.08 -1.85 3.13 -10.66 -0.03 -1.89 16 6 H 0.15 2.26 7.68 -2.39 -0.02 2.24 16 7 C -0.10 -2.41 6.60 31.80 0.21 -2.20 16 8 C 0.04 1.22 5.29 86.65 0.46 1.68 16 9 N -0.51 -17.53 5.25 -862.60 -4.53 -22.06 16 10 C 0.04 1.54 4.49 85.56 0.38 1.92 16 11 C 0.44 21.02 7.49 87.66 0.66 21.68 16 12 O -0.61 -33.48 13.10 -3.07 -0.04 -33.52 16 13 N -0.57 -29.48 5.29 -306.98 -1.62 -31.11 16 14 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 15 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 16 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 17 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 18 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 C 0.06 1.70 3.37 45.06 0.15 1.85 16 23 H 0.09 2.80 6.42 -2.39 -0.02 2.79 16 24 C -0.18 -3.63 7.60 71.98 0.55 -3.09 16 25 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 26 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 27 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.75 7.86 -2.39 -0.02 1.73 16 30 H 0.08 3.41 5.97 -2.39 -0.01 3.39 16 31 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 32 H 0.09 2.62 5.66 -2.39 -0.01 2.61 16 33 H 0.10 3.40 8.12 -2.39 -0.02 3.38 16 34 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 35 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.07 1.49 6.72 -2.39 -0.02 1.47 16 37 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.30 7.65 -2.39 -0.02 1.28 16 Total: -1.00 -70.38 312.09 1.61 -68.77 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.35 Total: 30.70 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 5.36 Total: 15.45 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -5.87 Total: -102.67 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.25 Total: -57.29 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -70.38 1.61 -68.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346684907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.226 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds