Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.63028 * 61.64734 * 5 3 2 7 7 C 1.55147 * 110.70534 * 298.54958 * 5 3 2 8 8 C 1.54906 * 101.65040 * 205.96562 * 7 5 3 9 9 N 1.47842 * 104.80068 * 37.06823 * 8 7 5 10 10 C 1.46893 * 111.00104 * 213.64031 * 9 8 7 11 11 C 1.50704 * 109.47156 * 290.12120 * 10 9 8 12 12 O 1.21292 * 119.99805 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00372 * 179.97438 * 11 10 9 14 14 C 1.37103 * 120.00288 * 180.02562 * 13 11 10 15 15 H 1.07996 * 119.99560 * 0.02562 * 14 13 11 16 16 C 1.38952 * 120.00261 * 180.02562 * 14 13 11 17 17 N 1.31414 * 119.99765 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99952 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47388 * 59.99886 * 18 16 14 20 20 H 1.48500 * 109.46988 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46799 * 299.99407 * 18 16 14 22 22 C 1.47452 * 108.56567 * 335.90450 * 9 8 7 23 23 H 1.09002 * 109.88700 * 120.39575 * 22 9 8 24 24 C 1.52998 * 109.89016 * 241.58735 * 22 9 8 25 25 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 28 28 H 1.09001 * 110.98919 * 324.05248 * 7 5 3 29 29 H 1.08997 * 110.99346 * 87.86666 * 7 5 3 30 30 H 1.09002 * 110.36973 * 155.89736 * 8 7 5 31 31 H 1.08998 * 110.37134 * 278.23733 * 8 7 5 32 32 H 1.09003 * 109.47383 * 50.12054 * 10 9 8 33 33 H 1.09003 * 109.47429 * 170.12269 * 10 9 8 34 34 H 0.97006 * 120.00343 * 0.02562 * 13 11 10 35 35 H 0.96998 * 119.99472 * 179.97438 * 17 16 14 36 36 H 1.08992 * 109.47165 * 177.76889 * 24 22 9 37 37 H 1.09001 * 109.46895 * 297.77159 * 24 22 9 38 38 H 1.08996 * 109.47244 * 57.76472 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9755 0.8111 -0.8969 7 6 4.1499 0.6113 1.2757 8 6 5.4991 1.3571 1.4270 9 7 5.2100 2.7478 1.0168 10 6 6.3718 3.3529 0.3520 11 6 7.4649 3.5847 1.3632 12 8 7.2931 3.2757 2.5235 13 7 8.6336 4.1343 0.9782 14 6 9.6282 4.3447 1.8980 15 1 9.4753 4.0696 2.9311 16 6 10.8330 4.9119 1.5011 17 7 11.0193 5.2462 0.2439 18 14 12.1884 5.1979 2.7543 19 1 12.5846 3.9010 3.3597 20 1 13.3626 5.8104 2.0825 21 1 11.6953 6.1102 3.8171 22 6 4.0358 2.7397 0.1250 23 1 3.2402 3.3490 0.5539 24 6 4.4246 3.2803 -1.2525 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.5068 0.7891 2.1377 29 1 4.3087 -0.4561 1.1226 30 1 5.8339 1.3292 2.4640 31 1 6.2514 0.9170 0.7724 32 1 6.7342 2.6827 -0.4276 33 1 6.0809 4.3044 -0.0932 34 1 8.7712 4.3811 0.0502 35 1 11.8602 5.6425 -0.0330 36 1 3.5623 3.2344 -1.9175 37 1 4.7551 4.3146 -1.1568 38 1 5.2337 2.6772 -1.6644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346684908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = -108.308684 kcal Electronic energy + Delta-G solvation = -21042.032506 eV Core-core repulsion = 17692.061725 eV Total energy + Delta-G solvation = -3349.970781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95189 -39.30443 -37.59633 -36.54149 -33.89816 -32.53203 -31.20726 -31.11479 -28.34269 -26.73180 -25.81823 -24.31254 -22.38908 -21.09326 -19.87028 -18.75576 -17.90926 -17.75114 -17.03010 -16.57640 -16.10061 -15.43653 -14.76893 -14.66916 -14.24904 -13.91199 -13.82497 -13.44823 -13.27618 -13.01965 -12.57322 -12.31749 -12.16959 -11.91594 -11.77592 -11.51616 -11.32961 -11.15454 -11.02845 -10.98877 -10.86823 -10.60138 -10.43037 -10.40119 -10.17913 -9.44857 -8.40454 -7.93325 -7.83821 -6.38158 -3.78713 2.03432 2.49254 3.22480 3.27783 3.32275 3.94518 4.00988 4.21460 4.34984 4.51971 4.67111 4.84907 4.92079 4.94974 5.13361 5.22813 5.24896 5.26694 5.36378 5.39662 5.49865 5.63193 5.76115 5.82170 5.89580 6.07736 6.14094 6.16741 6.27665 6.33526 6.44442 7.25387 7.27523 7.57095 7.58410 8.10156 8.66335 9.22179 9.58992 10.11405 10.79751 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.052763 B = 0.003549 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.545873 B = 7888.143456 C = 8178.798832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.474 3.526 4 O -0.502 6.502 5 C -0.105 4.105 6 H 0.114 0.886 7 C -0.116 4.116 8 C 0.051 3.949 9 N -0.497 5.497 10 C 0.036 3.964 11 C 0.444 3.556 12 O -0.578 6.578 13 N -0.566 5.566 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.081 3.919 23 H 0.104 0.896 24 C -0.172 4.172 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.846 -9.845 -5.375 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.389 6.389 5 C -0.125 4.125 6 H 0.132 0.868 7 C -0.154 4.154 8 C -0.076 4.076 9 N -0.221 5.221 10 C -0.096 4.096 11 C 0.229 3.771 12 O -0.461 6.461 13 N -0.204 5.204 14 C -0.427 4.427 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.028 4.028 23 H 0.121 0.879 24 C -0.230 4.230 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.114 -9.355 -4.234 19.108 hybrid contribution 0.771 -0.068 -0.874 1.168 sum -15.343 -9.422 -5.109 18.716 Atomic orbital electron populations 1.23262 0.76499 1.03603 1.02570 1.86523 1.23295 1.33542 1.84147 1.23537 0.91678 0.81243 0.71868 1.90661 1.66974 1.36290 1.45003 1.22471 0.87371 1.00232 1.02410 0.86770 1.22760 0.97478 0.99858 0.95314 1.23088 0.94642 0.86416 1.03426 1.63490 1.03274 1.18484 1.36874 1.22235 0.91219 1.00555 0.95569 1.19798 0.83633 0.84247 0.89400 1.90504 1.80872 1.55565 1.19186 1.41847 1.12272 1.54675 1.11559 1.19644 0.92341 1.37907 0.92837 0.88014 1.25243 0.98707 0.97185 0.96836 1.69606 1.26591 1.42873 1.15459 0.85930 0.79640 0.78755 0.79959 1.19958 1.21030 1.19919 1.22527 0.94820 0.92558 0.92870 0.87858 1.22418 1.01713 1.02493 0.96398 0.91972 0.88152 0.91839 0.90189 0.89631 0.88210 0.93488 0.93055 0.88707 0.77549 0.91889 0.92197 0.90802 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.82 10.55 -39.27 -0.41 -4.24 16 3 C 0.47 5.85 7.26 36.01 0.26 6.11 16 4 O -0.50 -7.43 15.21 -18.75 -0.29 -7.71 16 5 C -0.10 -1.22 2.97 -89.95 -0.27 -1.49 16 6 H 0.11 1.13 7.86 -51.93 -0.41 0.72 16 7 C -0.12 -1.37 6.50 -24.59 -0.16 -1.53 16 8 C 0.05 0.80 5.77 -2.30 -0.01 0.78 16 9 N -0.50 -8.40 4.85 -224.78 -1.09 -9.49 16 10 C 0.04 0.63 4.18 -4.98 -0.02 0.61 16 11 C 0.44 10.51 7.58 -10.99 -0.08 10.43 16 12 O -0.58 -15.63 14.67 5.55 0.08 -15.55 16 13 N -0.57 -14.39 5.29 -10.96 -0.06 -14.45 16 14 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 15 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 18 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.08 1.12 3.41 -66.72 -0.23 0.89 16 23 H 0.10 1.60 6.88 -51.93 -0.36 1.24 16 24 C -0.17 -2.06 7.83 37.16 0.29 -1.77 16 25 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 28 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.79 7.41 -51.93 -0.38 1.40 16 31 H 0.05 0.71 7.61 -51.93 -0.40 0.31 16 32 H 0.05 0.82 6.81 -51.93 -0.35 0.47 16 33 H 0.09 1.56 6.05 -51.93 -0.31 1.25 16 34 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.90 6.46 -51.93 -0.34 0.57 16 38 H 0.06 0.69 6.89 -51.93 -0.36 0.33 16 LS Contribution 313.80 15.07 4.73 4.73 Total: -1.00 -32.54 313.80 -6.00 -38.54 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.27 Total: 8.59 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 0.61 Total: 7.38 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.42 Total: -47.88 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.62 Total: -27.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.54 -6.00 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346684908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.770 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds