Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.63028 * 61.64734 * 5 3 2 7 7 C 1.55147 * 110.70534 * 298.54958 * 5 3 2 8 8 C 1.54906 * 101.65040 * 205.96562 * 7 5 3 9 9 N 1.47842 * 104.80068 * 37.06823 * 8 7 5 10 10 C 1.46893 * 111.00104 * 213.64031 * 9 8 7 11 11 C 1.50704 * 109.47156 * 290.12120 * 10 9 8 12 12 O 1.21292 * 119.99805 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00372 * 179.97438 * 11 10 9 14 14 C 1.37103 * 120.00288 * 180.02562 * 13 11 10 15 15 H 1.07996 * 119.99560 * 0.02562 * 14 13 11 16 16 C 1.38952 * 120.00261 * 180.02562 * 14 13 11 17 17 N 1.31414 * 119.99765 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99952 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47388 * 59.99886 * 18 16 14 20 20 H 1.48500 * 109.46988 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46799 * 299.99407 * 18 16 14 22 22 C 1.47452 * 108.56567 * 335.90450 * 9 8 7 23 23 H 1.09002 * 109.88700 * 120.39575 * 22 9 8 24 24 C 1.52998 * 109.89016 * 241.58735 * 22 9 8 25 25 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 28 28 H 1.09001 * 110.98919 * 324.05248 * 7 5 3 29 29 H 1.08997 * 110.99346 * 87.86666 * 7 5 3 30 30 H 1.09002 * 110.36973 * 155.89736 * 8 7 5 31 31 H 1.08998 * 110.37134 * 278.23733 * 8 7 5 32 32 H 1.09003 * 109.47383 * 50.12054 * 10 9 8 33 33 H 1.09003 * 109.47429 * 170.12269 * 10 9 8 34 34 H 0.97006 * 120.00343 * 0.02562 * 13 11 10 35 35 H 0.96998 * 119.99472 * 179.97438 * 17 16 14 36 36 H 1.08992 * 109.47165 * 177.76889 * 24 22 9 37 37 H 1.09001 * 109.46895 * 297.77159 * 24 22 9 38 38 H 1.08996 * 109.47244 * 57.76472 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9755 0.8111 -0.8969 7 6 4.1499 0.6113 1.2757 8 6 5.4991 1.3571 1.4270 9 7 5.2100 2.7478 1.0168 10 6 6.3718 3.3529 0.3520 11 6 7.4649 3.5847 1.3632 12 8 7.2931 3.2757 2.5235 13 7 8.6336 4.1343 0.9782 14 6 9.6282 4.3447 1.8980 15 1 9.4753 4.0696 2.9311 16 6 10.8330 4.9119 1.5011 17 7 11.0193 5.2462 0.2439 18 14 12.1884 5.1979 2.7543 19 1 12.5846 3.9010 3.3597 20 1 13.3626 5.8104 2.0825 21 1 11.6953 6.1102 3.8171 22 6 4.0358 2.7397 0.1250 23 1 3.2402 3.3490 0.5539 24 6 4.4246 3.2803 -1.2525 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.5068 0.7891 2.1377 29 1 4.3087 -0.4561 1.1226 30 1 5.8339 1.3292 2.4640 31 1 6.2514 0.9170 0.7724 32 1 6.7342 2.6827 -0.4276 33 1 6.0809 4.3044 -0.0932 34 1 8.7712 4.3811 0.0502 35 1 11.8602 5.6425 -0.0330 36 1 3.5623 3.2344 -1.9175 37 1 4.7551 4.3146 -1.1568 38 1 5.2337 2.6772 -1.6644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346684908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = -132.133022 kcal Electronic energy + Delta-G solvation = -21043.065607 eV Core-core repulsion = 17692.061725 eV Total energy + Delta-G solvation = -3351.003882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94126 -40.61930 -39.25410 -37.49544 -35.91517 -33.77630 -33.12685 -32.27949 -29.29515 -28.09609 -26.82376 -26.12781 -23.41026 -22.28134 -21.20046 -20.36124 -19.66807 -18.87040 -18.02316 -17.68719 -17.48076 -16.73287 -16.40409 -16.14413 -15.62343 -15.54238 -14.99105 -14.71903 -14.50310 -14.18204 -13.79096 -13.46533 -13.39820 -13.26518 -13.06576 -12.92462 -12.77751 -12.42621 -12.38690 -12.25665 -12.10284 -11.91960 -11.80573 -11.73065 -11.47626 -11.40501 -10.26100 -9.97796 -9.18946 -8.43946 -5.92245 1.09622 1.41087 1.42619 1.53359 1.66717 2.09479 2.30453 2.79104 3.20485 3.24134 3.47862 3.54861 3.81168 4.03340 4.17570 4.26645 4.28559 4.32003 4.34106 4.41437 4.48337 4.52955 4.58498 4.69057 4.71799 4.93450 5.02113 5.10426 5.16166 5.26098 5.33319 5.43229 5.89699 6.04952 6.13510 6.64341 6.66843 7.16223 7.60337 8.16760 8.73393 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.052763 B = 0.003549 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.545873 B = 7888.143456 C = 8178.798832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.479 3.521 4 O -0.532 6.532 5 C -0.097 4.097 6 H 0.142 0.858 7 C -0.103 4.103 8 C 0.050 3.950 9 N -0.525 5.525 10 C 0.050 3.950 11 C 0.440 3.560 12 O -0.617 6.617 13 N -0.575 5.575 14 C -0.332 4.332 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.991 3.009 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.274 1.274 22 C 0.081 3.919 23 H 0.083 0.917 24 C -0.169 4.169 25 H 0.063 0.937 26 H 0.133 0.867 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.249 -10.914 -6.673 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.323 3.677 4 O -0.422 6.422 5 C -0.117 4.117 6 H 0.160 0.840 7 C -0.141 4.141 8 C -0.077 4.077 9 N -0.249 5.249 10 C -0.080 4.080 11 C 0.227 3.773 12 O -0.503 6.503 13 N -0.213 5.213 14 C -0.462 4.462 15 H 0.096 0.904 16 C -0.212 4.212 17 N -0.562 5.562 18 Si 0.815 3.185 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.199 1.199 22 C -0.027 4.027 23 H 0.101 0.899 24 C -0.226 4.226 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.536 -10.440 -5.559 20.330 hybrid contribution 0.797 0.236 -0.443 0.942 sum -15.738 -10.204 -6.002 19.694 Atomic orbital electron populations 1.23568 0.74780 1.05774 1.02495 1.86507 1.24952 1.32378 1.83564 1.23563 0.91802 0.81298 0.71081 1.90658 1.67620 1.37354 1.46542 1.22417 0.87251 0.98666 1.03339 0.84004 1.22680 0.95055 1.01075 0.95270 1.23001 0.96831 0.86464 1.01447 1.63317 1.03663 1.19521 1.38416 1.22096 0.89716 1.02229 0.94008 1.20869 0.84089 0.82267 0.90027 1.90479 1.81666 1.56692 1.21429 1.41910 1.12635 1.55369 1.11389 1.19611 0.94069 1.39929 0.92549 0.90426 1.26005 1.00217 0.96264 0.98758 1.69666 1.27336 1.42682 1.16556 0.85014 0.77106 0.78650 0.77725 1.19635 1.19499 1.19911 1.22422 0.92924 0.94094 0.93218 0.89904 1.22382 1.02710 1.02257 0.95291 0.91777 0.84895 0.92270 0.90935 0.86677 0.91694 0.92916 0.90412 0.87100 0.77026 0.91349 0.90854 0.91312 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.74 10.55 -51.46 -0.54 -7.28 16 3 C 0.48 10.90 7.26 71.24 0.52 11.42 16 4 O -0.53 -15.21 15.21 21.98 0.33 -14.87 16 5 C -0.10 -2.03 2.97 -10.36 -0.03 -2.07 16 6 H 0.14 2.24 7.86 -2.39 -0.02 2.22 16 7 C -0.10 -2.25 6.50 31.98 0.21 -2.04 16 8 C 0.05 1.52 5.77 86.77 0.50 2.02 16 9 N -0.52 -17.47 4.85 -865.06 -4.20 -21.66 16 10 C 0.05 1.76 4.18 85.56 0.36 2.11 16 11 C 0.44 21.17 7.58 87.66 0.66 21.83 16 12 O -0.62 -34.53 14.67 -3.07 -0.04 -34.57 16 13 N -0.58 -29.70 5.29 -306.99 -1.62 -31.32 16 14 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 15 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 16 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 17 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 18 Si 0.99 43.23 29.55 68.60 2.03 45.25 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.08 2.14 3.41 45.26 0.15 2.30 16 23 H 0.08 2.54 6.88 -2.39 -0.02 2.53 16 24 C -0.17 -3.63 7.83 71.98 0.56 -3.07 16 25 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 26 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 28 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 2.42 7.41 -2.39 -0.02 2.40 16 31 H 0.05 1.52 7.61 -2.39 -0.02 1.50 16 32 H 0.08 2.31 6.81 -2.39 -0.02 2.30 16 33 H 0.11 3.51 6.05 -2.39 -0.01 3.50 16 34 H 0.40 19.33 7.90 -92.70 -0.73 18.59 16 35 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.55 6.46 -2.39 -0.02 1.53 16 38 H 0.07 1.41 6.89 -2.39 -0.02 1.40 16 Total: -1.00 -71.53 313.80 2.00 -69.53 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.35 Total: 28.87 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 5.41 Total: 15.66 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -5.54 Total: -102.59 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -0.25 Total: -56.72 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.53 2.00 -69.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346684908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.604 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds