Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 116.99857 * 2 1 4 4 O 1.20829 * 120.00403 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00045 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.27507 * 27.14472 * 5 3 2 7 7 C 1.54600 * 110.31144 * 149.23472 * 5 3 2 8 8 C 1.54932 * 102.92116 * 140.87381 * 7 5 3 9 9 N 1.48531 * 103.37922 * 322.50241 * 8 7 5 10 10 C 1.46904 * 111.00023 * 159.80487 * 9 8 7 11 11 C 1.50707 * 109.47002 * 69.87512 * 10 9 8 12 12 O 1.21285 * 120.00034 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99831 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99972 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99685 * 359.97438 * 14 13 11 16 16 C 1.38942 * 120.00002 * 179.97438 * 14 13 11 17 17 N 1.31414 * 120.00227 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.46856 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46728 * 120.00023 * 18 16 14 21 21 H 1.48501 * 109.47118 * 240.00088 * 18 16 14 22 22 C 1.48311 * 105.60848 * 39.18468 * 9 8 7 23 23 H 1.09010 * 109.88471 * 94.07843 * 22 9 8 24 24 C 1.52997 * 110.06717 * 215.24718 * 22 9 8 25 25 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47280 * 299.99814 * 1 2 3 27 27 H 1.08992 * 109.46975 * 60.00462 * 1 2 3 28 28 H 1.08996 * 110.72237 * 22.51562 * 7 5 3 29 29 H 1.09000 * 110.72092 * 259.23170 * 7 5 3 30 30 H 1.09003 * 110.67062 * 81.02558 * 8 7 5 31 31 H 1.09000 * 110.66756 * 203.98319 * 8 7 5 32 32 H 1.09004 * 109.46909 * 189.86988 * 10 9 8 33 33 H 1.08991 * 109.47171 * 309.87310 * 10 9 8 34 34 H 0.97003 * 120.00088 * 359.97438 * 13 11 10 35 35 H 0.97004 * 119.99789 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47488 * 174.71406 * 24 22 9 37 37 H 1.08999 * 109.47179 * 294.71491 * 24 22 9 38 38 H 1.09006 * 109.47146 * 54.71411 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9913 0.3860 -0.4656 7 6 4.0372 2.5469 -0.7411 8 6 5.2323 3.0276 0.1199 9 7 4.7949 2.7347 1.5088 10 6 5.9451 2.6711 2.4205 11 6 6.5225 4.0518 2.5979 12 8 6.0252 4.9958 2.0212 13 7 7.5915 4.2375 3.3974 14 6 8.1165 5.4936 3.5592 15 1 7.6736 6.3342 3.0456 16 6 9.2182 5.6852 4.3838 17 7 9.7567 4.6625 5.0090 18 14 9.9339 7.3967 4.6036 19 1 9.1510 8.3678 3.7981 20 1 9.8711 7.7790 6.0373 21 1 11.3482 7.4036 4.1509 22 6 4.0928 1.4302 1.4394 23 1 4.7877 0.6224 1.6697 24 6 2.9245 1.4096 2.4270 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 3.2475 3.2980 -0.7584 29 1 4.3633 2.3051 -1.7527 30 1 6.1339 2.4665 -0.1260 31 1 5.3976 4.0966 -0.0141 32 1 5.6213 2.2857 3.3874 33 1 6.7044 2.0107 2.0019 34 1 7.9890 3.4826 3.8589 35 1 10.5261 4.7963 5.5844 36 1 2.3594 0.4858 2.3023 37 1 3.3087 1.4657 3.4455 38 1 2.2730 2.2625 2.2369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346684909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -113.261111 kcal Electronic energy + Delta-G solvation = -21127.960840 eV Core-core repulsion = 17777.775306 eV Total energy + Delta-G solvation = -3350.185534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98088 -39.01856 -37.60274 -36.39901 -33.92567 -32.31445 -31.40182 -31.11922 -28.35592 -26.83680 -25.60592 -24.10520 -22.58434 -21.06673 -19.65544 -19.19432 -17.90814 -17.62951 -16.67833 -16.55181 -15.93003 -15.63972 -14.68409 -14.65540 -14.24315 -13.92200 -13.76985 -13.65029 -13.18319 -12.72880 -12.37373 -12.29102 -12.16164 -12.06224 -11.77011 -11.50041 -11.25829 -11.14135 -11.01063 -10.92585 -10.85284 -10.64837 -10.37367 -10.32165 -10.20009 -9.47772 -8.47226 -7.99353 -7.91352 -6.39424 -3.79944 2.12607 2.57079 3.18071 3.28482 3.35950 3.92104 3.96294 4.24591 4.42434 4.45031 4.76295 4.90637 4.97439 5.01279 5.14307 5.24577 5.27419 5.30472 5.34973 5.45747 5.58392 5.64202 5.79466 5.83247 5.91113 5.96138 6.19942 6.26599 6.26730 6.34178 6.47415 7.14212 7.23220 7.57860 7.68691 8.09148 8.64729 9.21087 9.57308 10.09446 10.78549 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049511 B = 0.003599 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.399407 B = 7777.510580 C = 7947.241625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.476 3.524 4 O -0.497 6.497 5 C -0.091 4.091 6 H 0.105 0.895 7 C -0.114 4.114 8 C 0.043 3.957 9 N -0.484 5.484 10 C 0.037 3.963 11 C 0.446 3.554 12 O -0.575 6.575 13 N -0.566 5.566 14 C -0.296 4.296 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.077 3.923 23 H 0.066 0.934 24 C -0.153 4.153 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.392 0.608 35 H 0.270 0.730 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 -12.967 -8.481 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.319 3.681 4 O -0.383 6.383 5 C -0.111 4.111 6 H 0.123 0.877 7 C -0.152 4.152 8 C -0.085 4.085 9 N -0.209 5.209 10 C -0.095 4.095 11 C 0.231 3.769 12 O -0.459 6.459 13 N -0.203 5.203 14 C -0.426 4.426 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.032 4.032 23 H 0.084 0.916 24 C -0.211 4.211 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.225 0.775 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.714 -11.611 -8.528 19.214 hybrid contribution 1.073 -0.382 0.313 1.181 sum -11.642 -11.993 -8.215 18.624 Atomic orbital electron populations 1.23239 0.76647 1.03467 1.02591 1.86531 1.23229 1.33827 1.84392 1.23420 0.91722 0.81255 0.71718 1.90677 1.66759 1.36218 1.44619 1.22021 0.87720 1.02109 0.99201 0.87652 1.22648 0.99575 0.95113 0.97874 1.23280 0.94696 1.03713 0.86781 1.64581 1.23433 1.25651 1.07219 1.22077 0.92107 0.97391 0.97907 1.19668 0.83217 0.89621 0.84367 1.90512 1.62010 1.42622 1.50721 1.41858 1.26658 1.10371 1.41440 1.19746 1.10618 0.86356 1.25882 0.87873 1.25248 0.96944 0.99299 0.96515 1.69623 1.23832 1.30412 1.30607 0.85812 0.78608 0.81930 0.78069 1.19216 1.20784 1.20810 1.22333 0.96530 0.92470 0.91897 0.91648 1.22004 0.97650 1.01758 0.99653 0.88275 0.91857 0.92000 0.88729 0.90424 0.93960 0.87563 0.89294 0.93110 0.77540 0.91984 0.92473 0.91591 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.95 10.20 -39.24 -0.40 -4.35 16 3 C 0.48 6.12 4.82 36.00 0.17 6.29 16 4 O -0.50 -7.82 14.71 -18.75 -0.28 -8.09 16 5 C -0.09 -1.08 3.49 -90.41 -0.32 -1.40 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 7 C -0.11 -1.48 6.56 -24.87 -0.16 -1.65 16 8 C 0.04 0.68 5.85 -1.90 -0.01 0.67 16 9 N -0.48 -8.25 4.61 -223.66 -1.03 -9.28 16 10 C 0.04 0.66 5.20 -4.97 -0.03 0.63 16 11 C 0.45 10.58 7.59 -10.98 -0.08 10.50 16 12 O -0.58 -15.64 14.42 5.55 0.08 -15.56 16 13 N -0.57 -14.39 5.29 -10.96 -0.06 -14.44 16 14 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 15 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 18 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.08 1.02 3.08 -66.41 -0.20 0.82 16 23 H 0.07 0.76 7.79 -51.92 -0.40 0.36 16 24 C -0.15 -2.02 8.38 37.16 0.31 -1.71 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.09 1.42 6.92 -51.93 -0.36 1.06 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.61 7.85 -51.93 -0.41 0.21 16 31 H 0.11 2.01 6.91 -51.93 -0.36 1.65 16 32 H 0.09 1.46 8.12 -51.93 -0.42 1.03 16 33 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 34 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.06 0.65 7.13 -51.93 -0.37 0.28 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.12 7.05 -51.93 -0.37 0.76 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -32.78 315.70 -6.19 -38.97 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.47 Total: 8.24 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 0.51 Total: 7.53 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.36 Total: -47.64 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.60 Total: -28.01 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.78 -6.19 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346684909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.296 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds