Wall clock time and date at job start Mon Mar 30 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 116.99857 * 2 1 4 4 O 1.20829 * 120.00403 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00045 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.27507 * 27.14472 * 5 3 2 7 7 C 1.54600 * 110.31144 * 149.23472 * 5 3 2 8 8 C 1.54932 * 102.92116 * 140.87381 * 7 5 3 9 9 N 1.48531 * 103.37922 * 322.50241 * 8 7 5 10 10 C 1.46904 * 111.00023 * 159.80487 * 9 8 7 11 11 C 1.50707 * 109.47002 * 69.87512 * 10 9 8 12 12 O 1.21285 * 120.00034 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99831 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99972 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99685 * 359.97438 * 14 13 11 16 16 C 1.38942 * 120.00002 * 179.97438 * 14 13 11 17 17 N 1.31414 * 120.00227 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.46856 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46728 * 120.00023 * 18 16 14 21 21 H 1.48501 * 109.47118 * 240.00088 * 18 16 14 22 22 C 1.48311 * 105.60848 * 39.18468 * 9 8 7 23 23 H 1.09010 * 109.88471 * 94.07843 * 22 9 8 24 24 C 1.52997 * 110.06717 * 215.24718 * 22 9 8 25 25 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47280 * 299.99814 * 1 2 3 27 27 H 1.08992 * 109.46975 * 60.00462 * 1 2 3 28 28 H 1.08996 * 110.72237 * 22.51562 * 7 5 3 29 29 H 1.09000 * 110.72092 * 259.23170 * 7 5 3 30 30 H 1.09003 * 110.67062 * 81.02558 * 8 7 5 31 31 H 1.09000 * 110.66756 * 203.98319 * 8 7 5 32 32 H 1.09004 * 109.46909 * 189.86988 * 10 9 8 33 33 H 1.08991 * 109.47171 * 309.87310 * 10 9 8 34 34 H 0.97003 * 120.00088 * 359.97438 * 13 11 10 35 35 H 0.97004 * 119.99789 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47488 * 174.71406 * 24 22 9 37 37 H 1.08999 * 109.47179 * 294.71491 * 24 22 9 38 38 H 1.09006 * 109.47146 * 54.71411 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9913 0.3860 -0.4656 7 6 4.0372 2.5469 -0.7411 8 6 5.2323 3.0276 0.1199 9 7 4.7949 2.7347 1.5088 10 6 5.9451 2.6711 2.4205 11 6 6.5225 4.0518 2.5979 12 8 6.0252 4.9958 2.0212 13 7 7.5915 4.2375 3.3974 14 6 8.1165 5.4936 3.5592 15 1 7.6736 6.3342 3.0456 16 6 9.2182 5.6852 4.3838 17 7 9.7567 4.6625 5.0090 18 14 9.9339 7.3967 4.6036 19 1 9.1510 8.3678 3.7981 20 1 9.8711 7.7790 6.0373 21 1 11.3482 7.4036 4.1509 22 6 4.0928 1.4302 1.4394 23 1 4.7877 0.6224 1.6697 24 6 2.9245 1.4096 2.4270 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 3.2475 3.2980 -0.7584 29 1 4.3633 2.3051 -1.7527 30 1 6.1339 2.4665 -0.1260 31 1 5.3976 4.0966 -0.0141 32 1 5.6213 2.2857 3.3874 33 1 6.7044 2.0107 2.0019 34 1 7.9890 3.4826 3.8589 35 1 10.5261 4.7963 5.5844 36 1 2.3594 0.4858 2.3023 37 1 3.3087 1.4657 3.4455 38 1 2.2730 2.2625 2.2369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346684909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:40 Heat of formation + Delta-G solvation = -137.275773 kcal Electronic energy + Delta-G solvation = -21129.002194 eV Core-core repulsion = 17777.775306 eV Total energy + Delta-G solvation = -3351.226888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.98172 -40.44196 -39.15177 -37.40666 -35.93872 -33.65169 -33.14696 -32.43647 -29.33053 -28.12578 -26.88112 -25.81038 -23.59042 -22.29813 -20.99812 -20.62926 -19.88341 -18.63542 -17.80908 -17.52512 -17.48022 -16.87413 -16.44502 -16.10553 -15.62407 -15.60877 -15.05580 -14.66177 -14.48431 -14.07042 -13.67984 -13.50615 -13.43421 -13.19340 -13.05151 -12.91817 -12.86888 -12.42682 -12.35323 -12.25459 -12.11757 -11.99593 -11.77027 -11.72402 -11.47254 -11.38268 -10.29796 -9.98897 -9.31030 -8.45547 -5.93704 1.14746 1.36758 1.41871 1.55964 1.72763 2.07805 2.29065 2.74549 3.21235 3.31630 3.43635 3.53891 3.87216 4.13642 4.19997 4.25788 4.33794 4.34318 4.36886 4.38387 4.41739 4.54531 4.64425 4.68516 4.73580 4.80874 4.93461 5.09488 5.16650 5.23216 5.40303 5.42692 5.88019 5.95950 6.11321 6.62934 6.75721 7.15190 7.58709 8.15409 8.72179 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049511 B = 0.003599 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.399407 B = 7777.510580 C = 7947.241625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.480 3.520 4 O -0.534 6.534 5 C -0.086 4.086 6 H 0.145 0.855 7 C -0.106 4.106 8 C 0.042 3.958 9 N -0.516 5.516 10 C 0.051 3.949 11 C 0.442 3.558 12 O -0.617 6.617 13 N -0.575 5.575 14 C -0.331 4.331 15 H 0.076 0.924 16 C -0.012 4.012 17 N -0.920 5.920 18 Si 0.991 3.009 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.270 1.270 22 C 0.076 3.924 23 H 0.097 0.903 24 C -0.149 4.149 25 H 0.134 0.866 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -15.296 -8.698 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.324 3.676 4 O -0.423 6.423 5 C -0.105 4.105 6 H 0.163 0.837 7 C -0.144 4.144 8 C -0.085 4.085 9 N -0.241 5.241 10 C -0.081 4.081 11 C 0.229 3.771 12 O -0.502 6.502 13 N -0.213 5.213 14 C -0.460 4.460 15 H 0.094 0.906 16 C -0.212 4.212 17 N -0.562 5.562 18 Si 0.815 3.185 19 H -0.200 1.200 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.032 4.032 23 H 0.114 0.886 24 C -0.206 4.206 25 H 0.152 0.848 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.473 -13.990 -8.739 20.680 hybrid contribution 0.902 0.311 0.365 1.021 sum -11.571 -13.679 -8.374 19.777 Atomic orbital electron populations 1.23536 0.75080 1.05694 1.02323 1.86517 1.24729 1.32484 1.83758 1.23597 0.92108 0.81218 0.70718 1.90675 1.67659 1.37609 1.46371 1.22075 0.87261 1.02870 0.98331 0.83677 1.22544 0.97518 0.95107 0.99240 1.23171 0.96718 1.01494 0.87153 1.64464 1.23344 1.28705 1.07572 1.21922 0.93134 0.93436 0.99568 1.20770 0.82051 0.91750 0.82498 1.90491 1.62945 1.44918 1.51885 1.41914 1.27425 1.09729 1.42200 1.19663 1.12031 0.86989 1.27344 0.90569 1.25994 0.96614 1.02981 0.95617 1.69674 1.24063 1.31876 1.30550 0.84901 0.78050 0.77349 0.78214 1.19997 1.19676 1.19469 1.22436 0.96589 0.91340 0.92821 0.88553 1.21969 0.97423 1.01431 0.99806 0.84779 0.92435 0.92098 0.91552 0.87249 0.92173 0.91892 0.87406 0.90256 0.76972 0.91337 0.90362 0.91512 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.83 10.20 -51.35 -0.52 -7.35 16 3 C 0.48 11.47 4.82 71.24 0.34 11.81 16 4 O -0.53 -16.80 14.71 21.95 0.32 -16.48 16 5 C -0.09 -1.80 3.49 -10.66 -0.04 -1.84 16 6 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 7 C -0.11 -2.63 6.56 31.80 0.21 -2.42 16 8 C 0.04 1.32 5.85 86.65 0.51 1.83 16 9 N -0.52 -17.10 4.61 -861.54 -3.97 -21.07 16 10 C 0.05 1.75 5.20 85.56 0.45 2.19 16 11 C 0.44 21.33 7.59 87.66 0.66 22.00 16 12 O -0.62 -34.97 14.42 -3.05 -0.04 -35.02 16 13 N -0.57 -29.71 5.29 -306.99 -1.62 -31.33 16 14 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 15 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 16 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 17 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 18 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 C 0.08 1.82 3.08 44.98 0.14 1.96 16 23 H 0.10 1.78 7.79 -2.38 -0.02 1.76 16 24 C -0.15 -3.67 8.38 71.98 0.60 -3.07 16 25 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 27 H 0.06 0.87 8.13 -2.39 -0.02 0.86 16 28 H 0.07 2.04 6.92 -2.39 -0.02 2.02 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.64 7.85 -2.39 -0.02 1.62 16 31 H 0.06 2.51 6.91 -2.39 -0.02 2.49 16 32 H 0.11 3.31 8.12 -2.39 -0.02 3.29 16 33 H 0.08 2.30 7.90 -2.39 -0.02 2.28 16 34 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 35 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.08 1.57 7.13 -2.39 -0.02 1.55 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.28 7.05 -2.38 -0.02 1.26 16 Total: -1.00 -73.77 315.70 2.16 -71.62 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.34 Total: 28.03 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.35 Total: 15.64 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -5.31 Total: -101.91 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -0.24 Total: -58.84 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.77 2.16 -71.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346684909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.660 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds