Wall clock time and date at job start Mon Mar 30 2020 01:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 C 1.53002 * 109.47062 * 119.99987 * 2 1 3 5 5 C 1.50706 * 109.47153 * 300.00207 * 4 2 1 6 6 H 1.07998 * 119.99501 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00481 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 359.72901 * 7 5 4 10 10 H 1.48502 * 109.46964 * 270.27509 * 9 7 5 11 11 H 1.48505 * 109.47036 * 30.26897 * 9 7 5 12 12 H 1.48490 * 109.47395 * 150.27411 * 9 7 5 13 13 C 1.52996 * 109.47755 * 239.99866 * 2 1 3 14 14 N 1.46500 * 109.46883 * 59.99936 * 13 2 1 15 15 C 1.33789 * 124.17571 * 90.02892 * 14 13 2 16 16 O 1.21538 * 123.77235 * 359.96321 * 15 14 13 17 17 N 1.34527 * 112.45885 * 179.97438 * 15 14 13 18 18 C 1.47311 * 106.61998 * 359.97438 * 17 15 14 19 19 H 1.09002 * 110.60408 * 241.32264 * 18 17 15 20 20 C 1.52997 * 110.60251 * 118.52498 * 18 17 15 21 21 O 1.42903 * 109.47120 * 66.45185 * 20 18 17 22 22 C 1.34773 * 124.17837 * 269.72670 * 14 13 2 23 23 O 1.21230 * 127.15872 * 0.02562 * 22 14 13 24 24 H 1.09002 * 109.47628 * 300.00520 * 1 2 3 25 25 H 1.09004 * 109.46660 * 60.00401 * 1 2 3 26 26 H 1.09001 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47462 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47158 * 299.99903 * 3 2 1 29 29 H 1.09002 * 109.46915 * 59.99687 * 3 2 1 30 30 H 1.09004 * 109.47503 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.46939 * 59.99797 * 4 2 1 32 32 H 0.96999 * 120.00235 * 179.72806 * 8 7 5 33 33 H 1.08999 * 109.47855 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46830 * 300.00560 * 13 2 1 35 35 H 0.96998 * 126.69780 * 179.97438 * 17 15 14 36 36 H 1.09000 * 109.47864 * 186.45776 * 20 18 17 37 37 H 1.09007 * 109.46946 * 306.45696 * 20 18 17 38 38 H 0.96701 * 114.00129 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5375 -0.0109 2.4798 6 1 0.9170 0.8675 2.3806 7 6 1.8701 -0.4821 3.7320 8 7 1.4321 0.1381 4.8058 9 14 2.9372 -2.0057 3.9035 10 1 2.0734 -3.2130 3.9447 11 1 3.8601 -2.0968 2.7436 12 1 3.7263 -1.9187 5.1584 13 6 2.0401 -0.7212 -1.2491 14 7 1.5518 -0.0306 -2.4453 15 6 2.2053 0.9623 -3.0592 16 8 3.2770 1.3977 -2.6865 17 7 1.5434 1.4253 -4.1350 18 6 0.3032 0.6369 -4.2381 19 1 0.2742 0.0889 -5.1799 20 6 -0.9229 1.5425 -4.1061 21 8 -0.9890 2.4218 -5.2307 22 6 0.3916 -0.3211 -3.0667 23 8 -0.4144 -1.1705 -2.7529 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7209 1.2496 31 1 1.6765 -1.7489 1.2492 32 1 1.6628 -0.1958 5.6868 33 1 3.1301 -0.7216 -1.2489 34 1 1.6767 -1.7489 -1.2492 35 1 1.8272 2.1389 -4.7274 36 1 -1.8243 0.9308 -4.0697 37 1 -0.8446 2.1289 -3.1906 38 1 -1.7438 3.0259 -5.2138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348959615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:23 Heat of formation + Delta-G solvation = -98.241055 kcal Electronic energy + Delta-G solvation = -22008.024768 eV Core-core repulsion = 18658.490552 eV Total energy + Delta-G solvation = -3349.534216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52174 -38.58529 -37.76814 -36.87630 -35.88231 -33.86937 -32.13715 -29.63764 -27.94638 -26.96442 -26.50516 -24.39504 -22.92371 -22.10203 -20.57301 -18.36535 -17.93070 -17.76715 -17.11552 -16.69995 -16.47734 -15.55610 -15.40953 -14.88852 -14.50495 -14.19111 -14.05063 -13.72876 -13.66001 -13.37574 -12.69318 -12.35952 -12.18903 -12.02888 -11.14058 -11.08962 -11.03539 -10.95569 -10.85349 -10.57202 -10.53841 -10.18295 -9.96987 -9.85744 -9.68808 -9.57805 -9.28065 -8.88426 -8.51057 -6.01356 -3.98419 1.54315 2.22975 2.97529 3.07569 3.32791 3.40680 3.43609 3.63562 4.03219 4.46869 4.47516 4.62593 5.01506 5.08258 5.22686 5.32023 5.42386 5.51006 5.59791 5.70669 6.03716 6.11288 6.25236 6.37608 6.66608 6.72629 6.73073 6.91516 7.07055 7.09338 7.11323 7.12179 7.20436 7.35860 7.39574 7.80218 8.16567 8.56290 9.02988 9.60893 11.11565 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030845 B = 0.005082 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.557680 B = 5508.232844 C = 5639.832707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.120 4.120 4 C -0.001 4.001 5 C -0.509 4.509 6 H 0.077 0.923 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.289 1.289 13 C 0.122 3.878 14 N -0.564 5.564 15 C 0.699 3.301 16 O -0.532 6.532 17 N -0.723 5.723 18 C 0.093 3.907 19 H 0.130 0.870 20 C 0.079 3.921 21 O -0.569 6.569 22 C 0.527 3.473 23 O -0.459 6.459 24 H 0.071 0.929 25 H 0.022 0.978 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.440 0.560 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 1.906 -20.436 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.178 4.178 4 C -0.039 4.039 5 C -0.546 4.546 6 H 0.095 0.905 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.215 1.215 13 C 0.002 3.998 14 N -0.310 5.310 15 C 0.400 3.600 16 O -0.405 6.405 17 N -0.388 5.388 18 C -0.016 4.016 19 H 0.147 0.853 20 C 0.000 4.000 21 O -0.375 6.375 22 C 0.312 3.688 23 O -0.328 6.328 24 H 0.090 0.910 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.285 0.715 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.303 1.270 -19.922 20.234 hybrid contribution 0.118 -0.210 0.128 0.273 sum -3.186 1.060 -19.794 20.077 Atomic orbital electron populations 1.21748 0.94620 1.01347 1.00260 1.20831 0.95993 0.96380 0.93510 1.21716 1.00785 0.95053 1.00197 1.19589 0.96302 0.95407 0.92558 1.21056 1.31730 1.13306 0.88555 0.90461 1.24992 0.95712 0.96772 0.95941 1.69901 1.46058 1.40521 0.97861 0.86850 0.81253 0.83956 0.77648 1.20375 1.19008 1.21512 1.22152 1.00556 0.95833 0.81227 1.46403 1.21531 1.34467 1.28568 1.15921 0.83948 0.79884 0.80237 1.91029 1.20052 1.61502 1.67906 1.45513 1.21571 1.40645 1.31115 1.22019 0.86572 0.92689 1.00358 0.85270 1.22198 0.95918 0.92311 0.89575 1.86377 1.53173 1.53103 1.44874 1.20434 0.81325 0.83770 0.83237 1.90827 1.42301 1.32085 1.67609 0.91033 0.95940 0.93024 0.92891 0.95615 0.91333 0.96234 0.96774 0.92816 0.88837 0.89077 0.71510 0.90786 0.92016 0.76266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 7.25 37.15 0.27 -2.07 16 2 C -0.07 -1.29 0.60 -154.51 -0.09 -1.39 16 3 C -0.12 -2.39 7.09 37.16 0.26 -2.13 16 4 C 0.00 -0.02 3.11 -27.88 -0.09 -0.10 16 5 C -0.51 -13.92 8.20 -34.44 -0.28 -14.21 16 6 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 9 Si 0.88 21.58 27.46 -169.99 -4.67 16.91 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.28 6.55 56.52 0.37 -5.91 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.12 2.03 4.73 -4.04 -0.02 2.01 16 14 N -0.56 -8.27 2.12 -120.73 -0.26 -8.53 16 15 C 0.70 10.12 7.05 -88.02 -0.62 9.50 16 16 O -0.53 -9.49 16.32 5.33 0.09 -9.40 16 17 N -0.72 -7.53 6.23 -59.19 -0.37 -7.90 16 18 C 0.09 0.88 3.97 -68.20 -0.27 0.61 16 19 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 20 C 0.08 0.63 6.78 37.16 0.25 0.88 16 21 O -0.57 -3.83 13.64 -35.23 -0.48 -4.31 16 22 C 0.53 6.89 6.01 -10.55 -0.06 6.82 16 23 O -0.46 -6.99 16.90 5.60 0.09 -6.90 16 24 H 0.07 1.51 6.62 -51.93 -0.34 1.17 16 25 H 0.02 0.37 6.21 -51.93 -0.32 0.05 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 28 H 0.02 0.46 6.18 -51.93 -0.32 0.14 16 29 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 30 H 0.02 0.46 7.21 -51.93 -0.37 0.08 16 31 H 0.01 0.32 7.56 -51.93 -0.39 -0.07 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.09 1.55 7.86 -51.93 -0.41 1.14 16 34 H 0.09 1.44 8.00 -51.93 -0.42 1.02 16 35 H 0.44 3.75 8.96 -40.82 -0.37 3.39 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.39 1.02 9.12 45.56 0.42 1.44 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -33.50 306.91 -5.40 -38.90 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.46 Total: 1.65 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.75 Total: 1.75 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.15 Total: -43.23 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.30 Total: -20.61 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.50 -5.40 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348959615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.336 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds