Wall clock time and date at job start Mon Mar 30 2020 01:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 C 1.53002 * 109.47062 * 119.99987 * 2 1 3 5 5 C 1.50706 * 109.47153 * 300.00207 * 4 2 1 6 6 H 1.07998 * 119.99501 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00481 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 359.72901 * 7 5 4 10 10 H 1.48502 * 109.46964 * 270.27509 * 9 7 5 11 11 H 1.48505 * 109.47036 * 30.26897 * 9 7 5 12 12 H 1.48490 * 109.47395 * 150.27411 * 9 7 5 13 13 C 1.52996 * 109.47755 * 239.99866 * 2 1 3 14 14 N 1.46500 * 109.46883 * 59.99936 * 13 2 1 15 15 C 1.33789 * 124.17571 * 90.02892 * 14 13 2 16 16 O 1.21538 * 123.77235 * 359.96321 * 15 14 13 17 17 N 1.34527 * 112.45885 * 179.97438 * 15 14 13 18 18 C 1.47311 * 106.61998 * 359.97438 * 17 15 14 19 19 H 1.09002 * 110.60408 * 241.32264 * 18 17 15 20 20 C 1.52997 * 110.60251 * 118.52498 * 18 17 15 21 21 O 1.42903 * 109.47120 * 66.45185 * 20 18 17 22 22 C 1.34773 * 124.17837 * 269.72670 * 14 13 2 23 23 O 1.21230 * 127.15872 * 0.02562 * 22 14 13 24 24 H 1.09002 * 109.47628 * 300.00520 * 1 2 3 25 25 H 1.09004 * 109.46660 * 60.00401 * 1 2 3 26 26 H 1.09001 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47462 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47158 * 299.99903 * 3 2 1 29 29 H 1.09002 * 109.46915 * 59.99687 * 3 2 1 30 30 H 1.09004 * 109.47503 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.46939 * 59.99797 * 4 2 1 32 32 H 0.96999 * 120.00235 * 179.72806 * 8 7 5 33 33 H 1.08999 * 109.47855 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46830 * 300.00560 * 13 2 1 35 35 H 0.96998 * 126.69780 * 179.97438 * 17 15 14 36 36 H 1.09000 * 109.47864 * 186.45776 * 20 18 17 37 37 H 1.09007 * 109.46946 * 306.45696 * 20 18 17 38 38 H 0.96701 * 114.00129 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5375 -0.0109 2.4798 6 1 0.9170 0.8675 2.3806 7 6 1.8701 -0.4821 3.7320 8 7 1.4321 0.1381 4.8058 9 14 2.9372 -2.0057 3.9035 10 1 2.0734 -3.2130 3.9447 11 1 3.8601 -2.0968 2.7436 12 1 3.7263 -1.9187 5.1584 13 6 2.0401 -0.7212 -1.2491 14 7 1.5518 -0.0306 -2.4453 15 6 2.2053 0.9623 -3.0592 16 8 3.2770 1.3977 -2.6865 17 7 1.5434 1.4253 -4.1350 18 6 0.3032 0.6369 -4.2381 19 1 0.2742 0.0889 -5.1799 20 6 -0.9229 1.5425 -4.1061 21 8 -0.9890 2.4218 -5.2307 22 6 0.3916 -0.3211 -3.0667 23 8 -0.4144 -1.1705 -2.7529 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7209 1.2496 31 1 1.6765 -1.7489 1.2492 32 1 1.6628 -0.1958 5.6868 33 1 3.1301 -0.7216 -1.2489 34 1 1.6767 -1.7489 -1.2492 35 1 1.8272 2.1389 -4.7274 36 1 -1.8243 0.9308 -4.0697 37 1 -0.8446 2.1289 -3.1906 38 1 -1.7438 3.0259 -5.2138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348959615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:22 Heat of formation + Delta-G solvation = -125.867563 kcal Electronic energy + Delta-G solvation = -22009.222743 eV Core-core repulsion = 18658.490552 eV Total energy + Delta-G solvation = -3350.732191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.59244 -39.70537 -38.95126 -37.91342 -36.89863 -35.21525 -34.08559 -30.43068 -29.85859 -28.34064 -28.13217 -25.37760 -24.66334 -23.14897 -21.74793 -19.80398 -18.98639 -18.86723 -18.58385 -17.97610 -17.49849 -16.63628 -16.50394 -16.08667 -15.85133 -15.52898 -15.48270 -15.20215 -14.87576 -14.47774 -14.22221 -14.12311 -13.68443 -12.98822 -12.87072 -12.79074 -12.62780 -12.59419 -12.31476 -12.12354 -11.80081 -11.55775 -11.46889 -11.33574 -11.11880 -11.03417 -10.70107 -10.61452 -10.39080 -8.21807 -6.23076 0.52236 1.16223 1.38157 1.40244 1.50836 1.95293 2.11480 2.40447 2.79362 3.13429 3.32300 3.70989 3.89906 3.92633 4.01535 4.04178 4.28814 4.40250 4.46250 4.58479 4.61347 4.65841 4.70724 4.83816 5.00127 5.02325 5.23183 5.31585 5.34571 5.44791 5.60272 5.73355 5.84084 6.05946 6.32501 6.37934 6.79853 6.82883 7.11508 7.39371 8.94254 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030845 B = 0.005082 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.557680 B = 5508.232844 C = 5639.832707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.065 4.065 3 C -0.107 4.107 4 C 0.001 3.999 5 C -0.506 4.506 6 H 0.043 0.957 7 C 0.004 3.996 8 N -0.954 5.954 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.246 1.246 12 H -0.290 1.290 13 C 0.129 3.871 14 N -0.571 5.571 15 C 0.696 3.304 16 O -0.571 6.571 17 N -0.702 5.702 18 C 0.102 3.898 19 H 0.162 0.838 20 C 0.086 3.914 21 O -0.574 6.574 22 C 0.525 3.475 23 O -0.480 6.480 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.020 0.980 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.451 0.549 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 0.939 -23.131 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.066 4.066 3 C -0.164 4.164 4 C -0.037 4.037 5 C -0.544 4.544 6 H 0.061 0.939 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.170 1.170 12 H -0.216 1.216 13 C 0.008 3.992 14 N -0.316 5.316 15 C 0.397 3.603 16 O -0.447 6.447 17 N -0.368 5.368 18 C -0.007 4.007 19 H 0.179 0.821 20 C 0.006 3.994 21 O -0.384 6.384 22 C 0.313 3.687 23 O -0.351 6.351 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.298 0.702 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.408 0.330 -22.686 22.943 hybrid contribution 0.040 0.193 0.902 0.923 sum -3.368 0.523 -21.784 22.049 Atomic orbital electron populations 1.21600 0.94316 1.01127 0.99784 1.20733 0.96156 0.95921 0.93799 1.21552 1.00031 0.95421 0.99413 1.19532 0.96194 0.95656 0.92345 1.21334 1.30437 1.12233 0.90392 0.93867 1.25893 0.97430 1.00259 0.95629 1.70057 1.48229 1.42744 0.98489 0.85810 0.79733 0.79951 0.78090 1.19331 1.16965 1.21600 1.21856 1.00652 0.96021 0.80658 1.46373 1.22329 1.34683 1.28170 1.16036 0.83639 0.79731 0.80890 1.91010 1.21786 1.62707 1.69173 1.45436 1.21299 1.40337 1.29716 1.22153 0.86545 0.92236 0.99770 0.82122 1.22064 0.95386 0.92343 0.89591 1.86330 1.54578 1.53398 1.44051 1.20956 0.80247 0.83829 0.83711 1.90823 1.42706 1.33133 1.68403 0.93979 0.93865 0.93015 0.93742 0.94119 0.94214 0.96126 0.95851 0.92836 0.88720 0.87887 0.70159 0.89452 0.93070 0.74035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 7.25 71.98 0.52 -3.68 16 2 C -0.07 -2.51 0.60 -52.18 -0.03 -2.54 16 3 C -0.11 -4.29 7.09 71.98 0.51 -3.78 16 4 C 0.00 0.03 3.11 29.85 0.09 0.12 16 5 C -0.51 -28.36 8.20 25.60 0.21 -28.15 16 6 H 0.04 2.66 5.92 -2.91 -0.02 2.64 16 7 C 0.00 0.23 5.47 84.65 0.46 0.69 16 8 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 9 Si 0.94 44.34 27.46 68.60 1.88 46.22 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.25 -10.75 6.55 99.48 0.65 -10.10 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 C 0.13 4.08 4.73 86.38 0.41 4.49 16 14 N -0.57 -15.56 2.12 -773.12 -1.64 -17.21 16 15 C 0.70 18.80 7.05 179.44 1.27 20.07 16 16 O -0.57 -19.73 16.32 -3.83 -0.06 -19.79 16 17 N -0.70 -12.61 6.23 -459.61 -2.86 -15.47 16 18 C 0.10 1.56 3.97 44.37 0.18 1.74 16 19 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 20 C 0.09 1.06 6.78 71.98 0.49 1.55 16 21 O -0.57 -5.61 13.64 -148.98 -2.03 -7.64 16 22 C 0.53 12.33 6.01 87.94 0.53 12.86 16 23 O -0.48 -13.44 16.90 -2.87 -0.05 -13.49 16 24 H 0.04 1.82 6.62 -2.39 -0.02 1.80 16 25 H 0.04 1.42 6.21 -2.39 -0.01 1.40 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 28 H 0.04 1.47 6.18 -2.39 -0.01 1.46 16 29 H 0.04 1.79 6.62 -2.39 -0.02 1.77 16 30 H 0.02 0.94 7.21 -2.39 -0.02 0.92 16 31 H 0.02 1.03 7.56 -2.39 -0.02 1.01 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.09 2.99 7.86 -2.39 -0.02 2.97 16 34 H 0.10 3.02 8.00 -2.39 -0.02 3.00 16 35 H 0.45 6.31 8.96 -92.71 -0.83 5.48 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.41 0.72 9.12 -74.06 -0.68 0.05 16 Total: -1.00 -73.57 306.91 -0.29 -73.86 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.46 Total: 9.75 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.63 Total: 3.37 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -4.20 Total: -92.28 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -2.14 Total: -40.92 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -73.57 -0.29 -73.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348959615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.008 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds