Wall clock time and date at job start Mon Mar 30 2020 01:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46787 * 2 1 4 4 N 1.46500 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.34531 * 126.69170 * 89.97462 * 4 3 2 6 6 O 1.21536 * 123.76958 * 0.03181 * 5 4 3 7 7 N 1.33791 * 112.45917 * 180.02562 * 5 4 3 8 8 C 1.46493 * 124.17634 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47128 * 90.02887 * 8 7 5 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.34765 * 111.64516 * 0.23325 * 7 5 4 18 18 O 1.21230 * 127.15912 * 179.73282 * 17 7 5 19 19 C 1.47311 * 126.69310 * 270.01540 * 4 3 2 20 20 H 1.09007 * 110.59846 * 298.49794 * 19 4 3 21 21 C 1.52999 * 110.59924 * 61.28154 * 19 4 3 22 22 O 1.42907 * 109.46969 * 65.00539 * 21 19 4 23 23 C 1.42897 * 114.00404 * 180.02562 * 22 21 19 24 24 H 1.09007 * 109.46502 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47302 * 300.00124 * 1 2 3 26 26 H 1.08999 * 109.46965 * 60.00427 * 1 2 3 27 27 H 1.08996 * 109.47302 * 239.99875 * 2 1 3 28 28 H 1.08999 * 109.46965 * 119.99573 * 2 1 3 29 29 H 1.08996 * 109.47301 * 59.99875 * 3 2 1 30 30 H 1.08999 * 109.47019 * 299.99540 * 3 2 1 31 31 H 1.09001 * 109.47786 * 330.03160 * 8 7 5 32 32 H 1.09006 * 109.47401 * 210.02745 * 8 7 5 33 33 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 34 34 H 1.08998 * 109.47351 * 185.00280 * 21 19 4 35 35 H 1.08999 * 109.47205 * 305.00777 * 21 19 4 36 36 H 1.08995 * 109.47089 * 180.02562 * 23 22 21 37 37 H 1.09008 * 109.46521 * 299.99999 * 23 22 21 38 38 H 1.08998 * 109.47294 * 59.99513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3092 1.4419 -1.0778 6 8 3.9033 1.4418 -2.2233 7 7 5.6060 1.4415 -0.7483 8 6 6.7020 1.4403 -1.7203 9 6 7.0790 2.8607 -2.0541 10 1 6.5542 3.6822 -1.5891 11 6 8.0937 3.1115 -2.9532 12 7 8.7324 2.1112 -3.5199 13 14 8.5604 4.8722 -3.3675 14 1 9.6724 4.8710 -4.3518 15 1 7.3862 5.5723 -3.9473 16 1 8.9943 5.5730 -2.1322 17 6 5.7793 1.4368 0.5881 18 8 6.8316 1.4308 1.1901 19 6 4.3847 1.4424 1.1822 20 1 4.2232 2.3391 1.7807 21 6 4.1542 0.1863 2.0248 22 8 4.5460 -0.9671 1.2775 23 6 4.3697 -2.2005 1.9771 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.3830 0.9264 -2.6271 32 1 7.5640 0.9259 -1.2953 33 1 8.4897 1.1969 -3.3050 34 1 4.7475 0.2468 2.9371 35 1 3.0978 0.1105 2.2826 36 1 4.6901 -3.0270 1.3428 37 1 4.9672 -2.1897 2.8887 38 1 3.3177 -2.3256 2.2337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349027943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:53 Heat of formation + Delta-G solvation = -119.272500 kcal Electronic energy + Delta-G solvation = -22007.536446 eV Core-core repulsion = 18657.090239 eV Total energy + Delta-G solvation = -3350.446207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.36657 -39.68052 -39.00761 -37.35915 -36.90543 -35.50750 -34.01532 -31.12985 -29.81824 -27.48619 -27.06014 -25.60044 -24.88690 -22.89259 -22.39818 -21.37967 -19.42542 -18.58349 -18.05637 -17.62488 -17.23889 -17.06194 -16.30809 -16.11853 -15.84737 -15.62996 -15.62270 -15.27415 -15.08903 -14.43645 -14.17125 -13.93135 -13.61623 -13.43134 -13.32033 -13.02627 -12.78037 -12.56899 -12.32873 -12.18821 -11.98139 -11.89356 -11.65035 -11.52245 -11.16271 -10.70920 -10.67519 -10.48029 -9.95541 -8.85113 -6.59581 0.65305 1.18246 1.47638 1.57291 1.77668 2.04485 2.07376 2.49644 2.65192 2.96332 3.03198 3.66336 3.78745 4.04833 4.10367 4.25291 4.32101 4.37447 4.41009 4.45895 4.49337 4.54460 4.60441 4.66971 4.71879 4.82612 4.93738 5.02996 5.21786 5.32069 5.39019 5.56190 5.57590 5.90818 6.12190 6.26475 6.27960 6.47204 7.08414 7.21730 8.53298 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.005936 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.830750 B = 4715.672425 C = 5333.758628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.144 3.856 4 N -0.607 5.607 5 C 0.696 3.304 6 O -0.590 6.590 7 N -0.569 5.569 8 C 0.254 3.746 9 C -0.628 4.628 10 H 0.048 0.952 11 C -0.025 4.025 12 N -0.921 5.921 13 Si 1.125 2.875 14 H -0.273 1.273 15 H -0.270 1.270 16 H -0.266 1.266 17 C 0.522 3.478 18 O -0.511 6.511 19 C 0.103 3.897 20 H 0.181 0.819 21 C 0.066 3.934 22 O -0.425 6.425 23 C 0.031 3.969 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.014 0.986 32 H 0.019 0.981 33 H 0.255 0.745 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.750 -4.051 16.314 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.025 3.975 4 N -0.345 5.345 5 C 0.398 3.602 6 O -0.468 6.468 7 N -0.311 5.311 8 C 0.134 3.866 9 C -0.666 4.666 10 H 0.066 0.934 11 C -0.224 4.224 12 N -0.557 5.557 13 Si 0.943 3.057 14 H -0.198 1.198 15 H -0.195 1.195 16 H -0.191 1.191 17 C 0.311 3.689 18 O -0.384 6.384 19 C -0.003 4.003 20 H 0.198 0.802 21 C -0.011 4.011 22 O -0.345 6.345 23 C -0.065 4.065 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.151 0.849 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.398 -3.155 14.888 22.372 hybrid contribution -0.532 -1.482 0.489 1.649 sum -16.930 -4.637 15.377 23.337 Atomic orbital electron populations 1.21663 0.92813 1.02620 1.02889 1.21960 0.97604 0.96107 1.01901 1.21775 0.72207 0.98311 1.05214 1.47835 1.06858 1.76337 1.03515 1.16131 0.81084 0.77219 0.85724 1.90857 1.77741 1.57146 1.21053 1.46513 1.08369 1.66165 1.10031 1.19016 0.83126 0.98165 0.86297 1.22364 1.22419 0.91668 1.30119 0.93355 1.27556 0.92563 1.10007 0.92290 1.70924 1.41841 0.99991 1.42912 0.82874 0.76928 0.68539 0.77321 1.19783 1.19536 1.19088 1.21378 0.92369 0.73301 0.81883 1.90688 1.32815 1.48252 1.66685 1.22572 0.84609 1.03690 0.89436 0.80217 1.22896 1.02912 0.82254 0.93078 1.87977 1.87141 1.15864 1.43524 1.22881 1.01666 0.84634 0.97283 0.92003 0.90038 0.93043 0.95172 0.90322 0.84889 0.90833 0.96847 0.96291 0.93588 0.89051 0.87123 0.90272 0.92763 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.14 -2.56 6.12 30.60 0.19 -2.38 16 3 C 0.14 2.93 5.87 86.38 0.51 3.44 16 4 N -0.61 -18.38 2.72 -817.77 -2.22 -20.60 16 5 C 0.70 31.43 8.31 179.44 1.49 32.92 16 6 O -0.59 -31.46 17.15 -3.83 -0.07 -31.52 16 7 N -0.57 -28.13 2.59 -777.22 -2.01 -30.14 16 8 C 0.25 15.07 4.77 85.64 0.41 15.47 16 9 C -0.63 -38.94 9.39 25.60 0.24 -38.70 16 10 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 11 C -0.03 -1.54 5.46 84.65 0.46 -1.07 16 12 N -0.92 -59.21 13.65 21.45 0.29 -58.92 16 13 Si 1.12 52.58 29.90 68.60 2.05 54.63 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 C 0.52 21.87 7.06 87.94 0.62 22.49 16 18 O -0.51 -24.28 17.75 -2.88 -0.05 -24.33 16 19 C 0.10 2.72 3.88 44.37 0.17 2.89 16 20 H 0.18 3.09 8.14 -2.38 -0.02 3.07 16 21 C 0.07 1.26 5.18 71.98 0.37 1.64 16 22 O -0.43 -11.45 10.04 -148.98 -1.50 -12.95 16 23 C 0.03 0.55 11.01 113.37 1.25 1.80 16 24 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.24 6.12 -2.39 -0.01 1.23 16 29 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.76 8.03 -2.39 -0.02 1.74 16 31 H 0.01 0.86 7.73 -2.39 -0.02 0.84 16 32 H 0.02 1.19 7.86 -2.38 -0.02 1.17 16 33 H 0.25 16.67 7.22 -92.71 -0.67 16.00 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.21 6.54 -2.39 -0.02 1.19 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -87.27 324.81 4.07 -83.20 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.15 Total: 3.20 kcal Atomic # 6 Polarization: 31.00 SS G_CDS: 6.42 Total: 37.43 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.94 Total: -109.65 kcal Atomic # 8 Polarization: -67.19 SS G_CDS: -1.61 Total: -68.81 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.05 Total: 54.63 kcal Total: -87.27 4.07 -83.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349027943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.070 kcal (2) G-P(sol) polarization free energy of solvation -87.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds