Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47451 * 2 1 4 4 O 1.42903 * 109.46884 * 119.99924 * 2 1 3 5 5 C 1.53003 * 109.46866 * 239.99442 * 2 1 3 6 6 H 1.08986 * 109.47657 * 305.89521 * 5 2 1 7 7 N 1.46505 * 109.47045 * 185.89409 * 5 2 1 8 8 C 1.34777 * 120.00068 * 84.99978 * 7 5 2 9 9 O 1.21285 * 119.99537 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00030 * 179.72370 * 8 7 5 11 11 C 1.52997 * 117.49933 * 248.62684 * 10 8 7 12 12 C 1.52994 * 117.49601 * 180.02562 * 10 8 7 13 13 C 1.50704 * 109.46961 * 65.90042 * 5 2 1 14 14 O 1.21291 * 120.00547 * 91.69670 * 13 5 2 15 15 N 1.34776 * 119.99737 * 271.69960 * 13 5 2 16 16 C 1.46505 * 120.00099 * 354.82361 * 15 13 5 17 17 C 1.37099 * 120.00102 * 174.82166 * 15 13 5 18 18 H 1.08000 * 119.99890 * 4.13504 * 17 15 13 19 19 C 1.38950 * 120.00158 * 184.14004 * 17 15 13 20 20 N 1.31417 * 119.99702 * 16.51694 * 19 17 15 21 21 Si 1.86797 * 119.99976 * 196.51823 * 19 17 15 22 22 H 1.48507 * 109.46787 * 90.00184 * 21 19 17 23 23 H 1.48504 * 109.47126 * 209.99652 * 21 19 17 24 24 H 1.48495 * 109.47265 * 330.00041 * 21 19 17 25 25 H 1.08998 * 109.47512 * 174.32140 * 1 2 3 26 26 H 1.09002 * 109.47410 * 294.32364 * 1 2 3 27 27 H 1.09004 * 109.46874 * 54.31730 * 1 2 3 28 28 H 0.96700 * 113.99661 * 179.97438 * 4 2 1 29 29 H 0.97005 * 119.99729 * 265.00457 * 7 5 2 30 30 H 1.09000 * 115.54962 * 34.33440 * 10 8 7 31 31 H 1.09003 * 117.49654 * 0.02562 * 11 10 8 32 32 H 1.08995 * 117.49997 * 145.02154 * 11 10 8 33 33 H 1.09005 * 117.49761 * 214.97922 * 12 10 8 34 34 H 1.09001 * 117.50087 * 359.97438 * 12 10 8 35 35 H 1.08999 * 109.46491 * 355.44346 * 16 15 13 36 36 H 1.09000 * 109.47311 * 115.44291 * 16 15 13 37 37 H 1.08995 * 109.46988 * 235.44691 * 16 15 13 38 38 H 0.96999 * 119.99282 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.0399 -0.7214 -1.2492 6 1 1.5930 -1.7139 -1.3035 7 7 3.4981 -0.8455 -1.1804 8 6 4.0560 -1.8762 -0.5151 9 8 3.3509 -2.7013 0.0263 10 6 5.5559 -2.0073 -0.4496 11 6 6.1971 -3.1714 -1.2075 12 6 6.1278 -3.1993 0.3202 13 6 1.6603 0.0683 -2.4754 14 8 2.4249 0.8957 -2.9247 15 7 0.4711 -0.1450 -3.0728 16 6 -0.4036 -1.2210 -2.6000 17 6 0.0800 0.6450 -4.1228 18 1 0.7521 1.3941 -4.5146 19 6 -1.1811 0.4818 -4.6830 20 7 -2.1101 -0.1785 -4.0289 21 14 -1.5558 1.2011 -6.3657 22 1 -1.2331 0.2006 -7.4146 23 1 -2.9964 1.5532 -6.4439 24 1 -0.7358 2.4211 -6.5763 25 1 -0.3634 -1.0226 -0.1017 26 1 -0.3634 0.4233 0.9364 27 1 -0.3633 0.5995 -0.8348 28 1 2.9702 -0.7122 1.2327 29 1 4.0619 -0.1857 -1.6137 30 1 6.1084 -1.0686 -0.4073 31 1 5.5340 -3.8422 -1.7539 32 1 7.1716 -2.9988 -1.6642 33 1 7.0569 -3.0451 0.8690 34 1 5.4193 -3.8886 0.7796 35 1 0.1056 -1.7867 -1.8199 36 1 -1.3217 -0.7926 -2.1979 37 1 -0.6454 -1.8840 -3.4307 38 1 -2.9905 -0.2921 -4.4198 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354429860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = -75.920319 kcal Electronic energy + Delta-G solvation = -21912.869262 eV Core-core repulsion = 18564.302946 eV Total energy + Delta-G solvation = -3348.566316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29942 -38.78645 -36.88197 -35.86200 -35.01901 -33.75210 -32.05364 -30.77162 -27.32042 -26.44925 -24.60158 -23.41977 -22.50716 -21.52816 -20.01268 -18.96733 -17.71206 -17.31078 -16.98645 -16.16981 -15.72717 -15.09855 -14.91681 -14.51789 -14.20678 -13.89122 -13.85150 -13.28195 -12.88013 -12.54940 -12.18310 -12.02281 -11.77176 -11.69590 -11.64773 -11.24190 -11.10911 -10.95460 -10.79271 -10.69849 -10.56958 -10.43363 -10.26933 -9.90539 -9.66954 -9.15638 -8.85012 -8.41673 -7.96814 -6.39594 -3.92998 2.59220 3.05347 3.16851 3.20910 3.26127 3.67348 3.82435 4.03188 4.51695 4.66738 4.75561 4.81135 4.86551 4.99438 5.08867 5.34897 5.42618 5.49147 5.57055 5.66794 5.76810 5.85635 5.93869 6.03382 6.23462 6.25291 6.46155 6.61913 6.70530 6.90263 7.27467 7.47045 7.71759 7.87982 7.94664 8.32857 8.41534 9.02677 9.28266 9.78253 10.55288 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026715 B = 0.005296 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.867194 B = 5285.487264 C = 5795.903908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 H 0.057 0.943 4 O -0.552 6.552 5 C 0.098 3.902 6 H 0.108 0.892 7 N -0.707 5.707 8 C 0.532 3.468 9 O -0.531 6.531 10 C -0.193 4.193 11 C -0.153 4.153 12 C -0.148 4.148 13 C 0.430 3.570 14 O -0.595 6.595 15 N -0.429 5.429 16 C 0.095 3.905 17 C -0.310 4.310 18 H 0.107 0.893 19 C 0.033 3.967 20 N -0.874 5.874 21 Si 0.929 3.071 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.366 0.634 29 H 0.409 0.591 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 -3.532 6.252 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.075 0.925 4 O -0.357 6.357 5 C -0.010 4.010 6 H 0.126 0.874 7 N -0.360 5.360 8 C 0.318 3.682 9 O -0.408 6.408 10 C -0.214 4.214 11 C -0.191 4.191 12 C -0.185 4.185 13 C 0.217 3.783 14 O -0.481 6.481 15 N -0.145 5.145 16 C -0.048 4.048 17 C -0.437 4.437 18 H 0.125 0.875 19 C -0.171 4.171 20 N -0.513 5.513 21 Si 0.756 3.244 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.193 1.193 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.213 0.787 29 H 0.246 0.754 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.053 0.947 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.794 -3.839 6.469 11.572 hybrid contribution 0.479 0.678 -1.267 1.514 sum 9.273 -3.162 5.202 11.093 Atomic orbital electron populations 1.22017 0.92016 1.03634 1.03060 1.22007 0.95921 0.94248 0.83389 0.92516 1.86538 1.25984 1.80304 1.42881 1.21704 0.81103 1.02268 0.95933 0.87449 1.45830 1.07227 1.28278 1.54675 1.19738 0.88983 0.81029 0.78422 1.90750 1.63262 1.41136 1.45605 1.22189 0.92998 0.96321 1.09930 1.22919 1.01964 0.98943 0.95240 1.22936 1.02370 0.98947 0.94268 1.19488 0.84462 0.87645 0.86730 1.90497 1.51494 1.39045 1.67103 1.43670 1.14591 1.27939 1.28330 1.22162 0.94837 0.89708 0.98084 1.19794 0.99726 1.16512 1.07678 0.87519 1.25309 0.94897 0.97197 0.99698 1.70092 1.03654 1.41191 1.36402 0.85877 0.77531 0.79334 0.81692 1.20282 1.20871 1.19307 0.91328 0.92049 0.89461 0.78736 0.75391 0.85878 0.88233 0.87879 0.88082 0.87336 0.94711 0.88972 0.92656 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 7.84 37.16 0.29 -2.41 16 2 C 0.11 1.92 3.39 -26.73 -0.09 1.83 16 3 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 4 O -0.55 -9.92 12.26 -52.76 -0.65 -10.56 16 5 C 0.10 1.91 1.96 -69.08 -0.14 1.78 16 6 H 0.11 2.21 5.26 -51.94 -0.27 1.94 16 7 N -0.71 -11.78 4.87 -54.93 -0.27 -12.05 16 8 C 0.53 8.24 6.03 -10.99 -0.07 8.17 16 9 O -0.53 -9.87 14.51 -11.98 -0.17 -10.04 16 10 C -0.19 -2.19 6.19 -91.78 -0.57 -2.76 16 11 C -0.15 -1.54 10.23 -26.76 -0.27 -1.81 16 12 C -0.15 -1.47 10.04 -26.76 -0.27 -1.74 16 13 C 0.43 10.03 6.25 -10.98 -0.07 9.97 16 14 O -0.59 -15.32 15.65 5.55 0.09 -15.23 16 15 N -0.43 -10.56 2.53 -122.19 -0.31 -10.87 16 16 C 0.10 2.12 6.64 59.85 0.40 2.52 16 17 C -0.31 -8.27 9.53 -14.93 -0.14 -8.41 16 18 H 0.11 3.00 7.22 -52.49 -0.38 2.62 16 19 C 0.03 0.83 5.28 -17.47 -0.09 0.74 16 20 N -0.87 -22.04 9.90 55.50 0.55 -21.49 16 21 Si 0.93 20.06 29.58 -169.99 -5.03 15.03 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H 0.07 1.22 6.54 -51.93 -0.34 0.88 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.75 6.26 -51.93 -0.33 1.42 16 28 H 0.37 5.88 6.68 45.56 0.30 6.18 16 29 H 0.41 6.55 7.82 -40.82 -0.32 6.23 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.24 7.67 -51.93 -0.40 0.85 16 35 H 0.03 0.69 3.99 -51.93 -0.21 0.49 16 36 H 0.09 2.12 6.05 -51.93 -0.31 1.81 16 37 H 0.05 1.29 7.55 -51.93 -0.39 0.90 16 38 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 306.24 15.07 4.61 4.61 Total: -1.00 -30.07 306.24 -6.51 -36.58 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -4.31 Total: 16.16 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.02 Total: 7.87 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.03 Total: -44.41 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.73 Total: -35.84 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.07 -6.51 -36.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354429860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.343 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds