Wall clock time and date at job start Mon Mar 30 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47451 * 2 1 4 4 O 1.42903 * 109.46884 * 119.99924 * 2 1 3 5 5 C 1.53003 * 109.46866 * 239.99442 * 2 1 3 6 6 H 1.08986 * 109.47657 * 305.89521 * 5 2 1 7 7 N 1.46505 * 109.47045 * 185.89409 * 5 2 1 8 8 C 1.34777 * 120.00068 * 84.99978 * 7 5 2 9 9 O 1.21285 * 119.99537 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00030 * 179.72370 * 8 7 5 11 11 C 1.52997 * 117.49933 * 248.62684 * 10 8 7 12 12 C 1.52994 * 117.49601 * 180.02562 * 10 8 7 13 13 C 1.50704 * 109.46961 * 65.90042 * 5 2 1 14 14 O 1.21291 * 120.00547 * 91.69670 * 13 5 2 15 15 N 1.34776 * 119.99737 * 271.69960 * 13 5 2 16 16 C 1.46505 * 120.00099 * 354.82361 * 15 13 5 17 17 C 1.37099 * 120.00102 * 174.82166 * 15 13 5 18 18 H 1.08000 * 119.99890 * 4.13504 * 17 15 13 19 19 C 1.38950 * 120.00158 * 184.14004 * 17 15 13 20 20 N 1.31417 * 119.99702 * 16.51694 * 19 17 15 21 21 Si 1.86797 * 119.99976 * 196.51823 * 19 17 15 22 22 H 1.48507 * 109.46787 * 90.00184 * 21 19 17 23 23 H 1.48504 * 109.47126 * 209.99652 * 21 19 17 24 24 H 1.48495 * 109.47265 * 330.00041 * 21 19 17 25 25 H 1.08998 * 109.47512 * 174.32140 * 1 2 3 26 26 H 1.09002 * 109.47410 * 294.32364 * 1 2 3 27 27 H 1.09004 * 109.46874 * 54.31730 * 1 2 3 28 28 H 0.96700 * 113.99661 * 179.97438 * 4 2 1 29 29 H 0.97005 * 119.99729 * 265.00457 * 7 5 2 30 30 H 1.09000 * 115.54962 * 34.33440 * 10 8 7 31 31 H 1.09003 * 117.49654 * 0.02562 * 11 10 8 32 32 H 1.08995 * 117.49997 * 145.02154 * 11 10 8 33 33 H 1.09005 * 117.49761 * 214.97922 * 12 10 8 34 34 H 1.09001 * 117.50087 * 359.97438 * 12 10 8 35 35 H 1.08999 * 109.46491 * 355.44346 * 16 15 13 36 36 H 1.09000 * 109.47311 * 115.44291 * 16 15 13 37 37 H 1.08995 * 109.46988 * 235.44691 * 16 15 13 38 38 H 0.96999 * 119.99282 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.0399 -0.7214 -1.2492 6 1 1.5930 -1.7139 -1.3035 7 7 3.4981 -0.8455 -1.1804 8 6 4.0560 -1.8762 -0.5151 9 8 3.3509 -2.7013 0.0263 10 6 5.5559 -2.0073 -0.4496 11 6 6.1971 -3.1714 -1.2075 12 6 6.1278 -3.1993 0.3202 13 6 1.6603 0.0683 -2.4754 14 8 2.4249 0.8957 -2.9247 15 7 0.4711 -0.1450 -3.0728 16 6 -0.4036 -1.2210 -2.6000 17 6 0.0800 0.6450 -4.1228 18 1 0.7521 1.3941 -4.5146 19 6 -1.1811 0.4818 -4.6830 20 7 -2.1101 -0.1785 -4.0289 21 14 -1.5558 1.2011 -6.3657 22 1 -1.2331 0.2006 -7.4146 23 1 -2.9964 1.5532 -6.4439 24 1 -0.7358 2.4211 -6.5763 25 1 -0.3634 -1.0226 -0.1017 26 1 -0.3634 0.4233 0.9364 27 1 -0.3633 0.5995 -0.8348 28 1 2.9702 -0.7122 1.2327 29 1 4.0619 -0.1857 -1.6137 30 1 6.1084 -1.0686 -0.4073 31 1 5.5340 -3.8422 -1.7539 32 1 7.1716 -2.9988 -1.6642 33 1 7.0569 -3.0451 0.8690 34 1 5.4193 -3.8886 0.7796 35 1 0.1056 -1.7867 -1.8199 36 1 -1.3217 -0.7926 -2.1979 37 1 -0.6454 -1.8840 -3.4307 38 1 -2.9905 -0.2921 -4.4198 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354429860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:27 Heat of formation + Delta-G solvation = -97.290338 kcal Electronic energy + Delta-G solvation = -21913.795935 eV Core-core repulsion = 18564.302946 eV Total energy + Delta-G solvation = -3349.492989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75763 -40.34305 -38.33970 -37.00497 -36.83251 -35.24261 -33.89747 -32.37835 -28.87597 -28.29246 -26.31504 -24.70162 -23.27664 -23.13631 -21.28967 -20.61450 -19.15834 -18.93362 -18.61607 -17.72513 -17.25598 -16.66592 -16.24255 -15.99891 -15.90747 -15.42873 -15.25484 -14.75786 -14.47180 -13.93156 -13.85160 -13.55997 -13.44901 -13.24504 -12.97799 -12.89216 -12.52677 -12.48914 -12.39096 -12.20394 -12.12723 -11.51652 -11.44059 -11.37658 -11.08121 -10.93905 -10.58769 -10.03551 -9.91603 -8.33213 -5.95648 1.31445 1.40640 1.43082 1.53527 1.75613 1.97933 2.27365 2.85335 2.94457 3.04367 3.26770 3.62581 3.76126 3.80230 3.86133 3.90775 4.02647 4.22464 4.28821 4.35212 4.56870 4.76654 4.79033 4.91310 4.94724 5.01993 5.05123 5.17517 5.23482 5.28216 5.39671 5.46435 5.94562 6.36061 6.43192 6.55608 7.06341 7.13951 7.36168 7.86358 8.60119 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026715 B = 0.005296 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.867194 B = 5285.487264 C = 5795.903908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.111 3.889 3 H 0.058 0.942 4 O -0.553 6.553 5 C 0.112 3.888 6 H 0.097 0.903 7 N -0.707 5.707 8 C 0.532 3.468 9 O -0.564 6.564 10 C -0.202 4.202 11 C -0.148 4.148 12 C -0.138 4.138 13 C 0.428 3.572 14 O -0.623 6.623 15 N -0.440 5.440 16 C 0.110 3.890 17 C -0.347 4.347 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.884 5.884 21 Si 0.991 3.009 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.272 1.272 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.374 0.626 29 H 0.414 0.586 30 H 0.151 0.849 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.915 -3.742 6.573 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.050 3.950 3 H 0.076 0.924 4 O -0.359 6.359 5 C 0.003 3.997 6 H 0.114 0.886 7 N -0.360 5.360 8 C 0.321 3.679 9 O -0.443 6.443 10 C -0.223 4.223 11 C -0.186 4.186 12 C -0.175 4.175 13 C 0.216 3.784 14 O -0.511 6.511 15 N -0.157 5.157 16 C -0.032 4.032 17 C -0.475 4.475 18 H 0.102 0.898 19 C -0.199 4.199 20 N -0.523 5.523 21 Si 0.814 3.186 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.197 1.197 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.223 0.777 29 H 0.251 0.749 30 H 0.169 0.831 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.871 -4.067 6.808 12.662 hybrid contribution 0.163 0.710 -1.331 1.517 sum 10.034 -3.357 5.477 11.914 Atomic orbital electron populations 1.21931 0.91890 1.03339 1.03086 1.21898 0.96017 0.94055 0.82980 0.92439 1.86522 1.26916 1.80209 1.42250 1.21420 0.83088 1.00785 0.94451 0.88560 1.45853 1.05898 1.29052 1.55206 1.20472 0.90768 0.79663 0.77015 1.90733 1.64584 1.42090 1.46915 1.22252 0.89889 0.98320 1.11820 1.23043 1.02646 0.97404 0.95478 1.23028 1.02898 0.97205 0.94385 1.20106 0.83699 0.87336 0.87232 1.90464 1.52213 1.40319 1.68112 1.43824 1.15285 1.28234 1.28348 1.22010 0.94502 0.88913 0.97825 1.19739 1.00340 1.17709 1.09662 0.89836 1.26024 0.94224 0.97290 1.02411 1.70157 1.03871 1.40995 1.37253 0.84969 0.77639 0.78458 0.77503 1.19771 1.19615 1.19699 0.91293 0.90190 0.91680 0.77724 0.74869 0.83100 0.89983 0.84978 0.84915 0.89275 0.92595 0.89785 0.94154 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 7.84 71.98 0.56 -4.61 16 2 C 0.11 4.02 3.39 30.59 0.10 4.12 16 3 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 4 O -0.55 -19.18 12.26 -132.22 -1.62 -20.80 16 5 C 0.11 4.35 1.96 44.25 0.09 4.44 16 6 H 0.10 3.98 5.26 -2.39 -0.01 3.96 16 7 N -0.71 -23.15 4.87 -446.09 -2.17 -25.32 16 8 C 0.53 15.93 6.03 87.66 0.53 16.45 16 9 O -0.56 -20.70 14.51 13.72 0.20 -20.50 16 10 C -0.20 -4.10 6.19 -11.54 -0.07 -4.17 16 11 C -0.15 -2.62 10.23 30.58 0.31 -2.30 16 12 C -0.14 -2.38 10.04 30.58 0.31 -2.07 16 13 C 0.43 20.34 6.25 87.66 0.55 20.89 16 14 O -0.62 -32.72 15.65 -3.06 -0.05 -32.76 16 15 N -0.44 -22.18 2.53 -658.88 -1.67 -23.85 16 16 C 0.11 4.98 6.64 127.77 0.85 5.83 16 17 C -0.35 -18.99 9.53 84.04 0.80 -18.19 16 18 H 0.08 4.87 7.22 -2.91 -0.02 4.85 16 19 C 0.00 0.18 5.28 84.93 0.45 0.62 16 20 N -0.88 -44.57 9.90 21.66 0.21 -44.36 16 21 Si 0.99 40.99 29.58 68.60 2.03 43.02 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H 0.07 2.42 6.54 -2.39 -0.02 2.41 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 2.63 6.26 -2.38 -0.01 2.62 16 28 H 0.37 11.53 6.68 -74.06 -0.49 11.04 16 29 H 0.41 12.96 7.82 -92.70 -0.73 12.23 16 30 H 0.15 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.92 7.67 -2.39 -0.02 1.90 16 35 H 0.06 2.25 3.99 -2.39 -0.01 2.24 16 36 H 0.08 3.93 6.05 -2.39 -0.01 3.92 16 37 H 0.04 1.91 7.55 -2.39 -0.02 1.89 16 38 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -64.98 306.24 1.30 -63.68 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.11 Total: 39.87 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 4.48 Total: 21.02 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -3.63 Total: -93.53 kcal Atomic # 8 Polarization: -72.59 SS G_CDS: -1.47 Total: -74.07 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -64.98 1.30 -63.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354429860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.612 kcal (2) G-P(sol) polarization free energy of solvation -64.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds