Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 O 1.42899 * 109.47037 * 119.99837 * 2 1 3 5 5 C 1.53007 * 109.47138 * 239.99824 * 2 1 3 6 6 H 1.08992 * 109.46730 * 296.84274 * 5 2 1 7 7 N 1.46496 * 109.47020 * 56.84321 * 5 2 1 8 8 C 1.34774 * 120.00340 * 274.99899 * 7 5 2 9 9 O 1.21278 * 119.99511 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00422 * 179.97438 * 8 7 5 11 11 C 1.52998 * 117.50163 * 248.62538 * 10 8 7 12 12 C 1.52994 * 117.49906 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.46822 * 176.84454 * 5 2 1 14 14 O 1.21292 * 120.00405 * 271.38720 * 13 5 2 15 15 N 1.34781 * 119.99969 * 91.39349 * 13 5 2 16 16 C 1.46498 * 120.00070 * 354.52884 * 15 13 5 17 17 C 1.37096 * 119.99739 * 174.53293 * 15 13 5 18 18 H 1.07995 * 120.00572 * 329.70664 * 17 15 13 19 19 C 1.38956 * 119.99955 * 149.98086 * 17 15 13 20 20 N 1.31407 * 119.99998 * 161.91438 * 19 17 15 21 21 Si 1.86804 * 119.99753 * 341.91981 * 19 17 15 22 22 H 1.48497 * 109.46952 * 90.02600 * 21 19 17 23 23 H 1.48496 * 109.46864 * 210.02466 * 21 19 17 24 24 H 1.48499 * 109.47282 * 330.02493 * 21 19 17 25 25 H 1.08998 * 109.47387 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47149 * 300.00531 * 1 2 3 27 27 H 1.09003 * 109.46968 * 60.00347 * 1 2 3 28 28 H 0.96696 * 114.00022 * 56.34212 * 4 2 1 29 29 H 0.97006 * 119.99613 * 94.99921 * 7 5 2 30 30 H 1.09005 * 115.54359 * 34.33004 * 10 8 7 31 31 H 1.08997 * 117.49874 * 359.97438 * 11 10 8 32 32 H 1.09002 * 117.49438 * 145.01844 * 11 10 8 33 33 H 1.09002 * 117.49920 * 214.98012 * 12 10 8 34 34 H 1.08999 * 117.49963 * 0.02562 * 12 10 8 35 35 H 1.09001 * 109.47245 * 275.23782 * 16 15 13 36 36 H 1.09002 * 109.46813 * 35.23327 * 16 15 13 37 37 H 1.09000 * 109.47126 * 155.23661 * 16 15 13 38 38 H 0.97002 * 120.00019 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 1 1.7236 -1.7639 -1.2213 7 7 1.4905 -0.0761 -2.4442 8 6 0.2706 -0.4255 -2.8982 9 8 -0.3725 -1.2738 -2.3171 10 6 -0.2949 0.2387 -4.1271 11 6 -1.4949 1.1688 -3.9385 12 6 -1.6846 -0.2012 -4.5916 13 6 3.5449 -0.6539 -1.2889 14 8 4.0961 0.2847 -1.8241 15 7 4.2785 -1.6367 -0.7298 16 6 3.6178 -2.7079 0.0200 17 6 5.6430 -1.6339 -0.8628 18 1 6.0990 -1.2055 -1.7431 19 6 6.4392 -2.1873 0.1325 20 7 7.6859 -2.5111 -0.1275 21 14 5.7371 -2.4710 1.8402 22 1 5.1390 -3.8284 1.9102 23 1 6.8226 -2.3559 2.8470 24 1 4.6918 -1.4544 2.1209 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6758 -1.5774 1.2616 29 1 2.0048 0.6027 -2.9087 30 1 0.4322 0.5039 -4.8947 31 1 -1.8758 1.3000 -2.9257 32 1 -1.5575 2.0463 -4.5822 33 1 -1.8722 -0.2254 -5.6651 34 1 -2.1901 -0.9707 -4.0082 35 1 3.4531 -2.3839 1.0476 36 1 2.6599 -2.9399 -0.4457 37 1 4.2486 -3.5968 0.0159 38 1 8.2418 -2.8971 0.5674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354429863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = -75.883367 kcal Electronic energy + Delta-G solvation = -22031.615615 eV Core-core repulsion = 18683.050901 eV Total energy + Delta-G solvation = -3348.564713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46846 -38.92584 -37.01678 -36.16592 -35.12437 -34.02137 -32.07270 -30.59021 -28.00431 -26.55347 -24.93784 -23.79967 -22.59566 -21.61006 -20.14612 -19.17293 -17.67379 -17.12783 -16.79198 -16.47630 -15.81458 -15.38858 -15.29748 -14.69006 -14.64307 -14.28725 -13.94886 -13.28092 -12.86754 -12.69739 -12.46302 -12.38026 -12.24104 -12.08749 -11.79393 -11.73887 -11.55817 -10.96071 -10.78849 -10.65824 -10.61400 -10.38915 -10.21890 -9.84859 -9.78341 -9.20395 -8.99467 -8.49278 -7.85457 -6.41442 -3.98045 2.48502 3.00207 3.09151 3.25260 3.34566 3.57122 3.73350 4.15102 4.32006 4.50882 4.60950 4.71684 4.75761 4.92193 5.01962 5.14588 5.17494 5.27662 5.38852 5.49781 5.53933 5.61883 5.76068 5.81762 5.89196 5.94157 6.05323 6.12778 6.26423 6.33271 6.51498 7.44281 7.63858 7.74767 8.15201 8.28511 8.43012 8.87099 9.26599 9.64162 10.70005 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031381 B = 0.005618 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.046106 B = 4982.951126 C = 5420.069992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 H 0.103 0.897 4 O -0.548 6.548 5 C 0.097 3.903 6 H 0.101 0.899 7 N -0.699 5.699 8 C 0.543 3.457 9 O -0.544 6.544 10 C -0.193 4.193 11 C -0.153 4.153 12 C -0.147 4.147 13 C 0.458 3.542 14 O -0.570 6.570 15 N -0.447 5.447 16 C 0.043 3.957 17 C -0.315 4.315 18 H 0.110 0.890 19 C 0.057 3.943 20 N -0.866 5.866 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.250 1.250 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.370 0.630 29 H 0.412 0.588 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.500 3.039 -3.291 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.043 3.957 3 H 0.121 0.879 4 O -0.352 6.352 5 C -0.012 4.012 6 H 0.119 0.881 7 N -0.352 5.352 8 C 0.330 3.670 9 O -0.422 6.422 10 C -0.214 4.214 11 C -0.191 4.191 12 C -0.185 4.185 13 C 0.245 3.755 14 O -0.453 6.453 15 N -0.167 5.167 16 C -0.100 4.100 17 C -0.442 4.442 18 H 0.127 0.873 19 C -0.149 4.149 20 N -0.502 5.502 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.175 1.175 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.218 0.782 29 H 0.249 0.751 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.132 3.360 -2.956 17.707 hybrid contribution -0.068 -0.491 0.566 0.753 sum -17.200 2.869 -2.390 17.600 Atomic orbital electron populations 1.22547 0.95437 1.03318 1.01764 1.22142 0.93224 0.97016 0.83314 0.87937 1.86754 1.74020 1.31113 1.43347 1.21710 0.94112 0.99077 0.86308 0.88111 1.45655 1.18132 1.42653 1.28797 1.19585 0.80950 0.82110 0.84372 1.90668 1.59637 1.32876 1.59004 1.22190 0.93347 1.06693 0.99193 1.22922 0.98864 0.94322 1.02974 1.22928 0.95992 0.98255 1.01299 1.19711 0.86979 0.83294 0.85485 1.90547 1.72371 1.33232 1.49135 1.43542 1.06897 1.19174 1.47048 1.22371 0.98101 0.92652 0.96903 1.19167 0.78289 1.40224 1.06511 0.87273 1.25335 0.95193 0.95896 0.98457 1.69711 1.07612 1.38760 1.34164 0.87027 0.79104 0.79150 0.83974 1.20274 1.21820 1.17452 0.91246 0.92442 0.91978 0.78222 0.75140 0.85723 0.88308 0.87828 0.88031 0.87410 0.92126 0.92286 0.90283 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.00 37.16 0.30 -2.06 16 2 C 0.10 1.68 3.33 -26.73 -0.09 1.59 16 3 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 4 O -0.55 -9.22 11.21 -35.23 -0.39 -9.62 16 5 C 0.10 1.70 1.98 -69.08 -0.14 1.57 16 6 H 0.10 1.73 5.39 -51.93 -0.28 1.45 16 7 N -0.70 -10.75 4.89 -54.94 -0.27 -11.01 16 8 C 0.54 7.67 5.86 -10.99 -0.06 7.60 16 9 O -0.54 -8.81 13.38 5.56 0.07 -8.74 16 10 C -0.19 -2.04 6.19 -91.78 -0.57 -2.61 16 11 C -0.15 -1.31 10.23 -26.76 -0.27 -1.59 16 12 C -0.15 -1.35 10.04 -26.76 -0.27 -1.62 16 13 C 0.46 10.47 6.55 -10.98 -0.07 10.39 16 14 O -0.57 -14.80 15.96 5.55 0.09 -14.71 16 15 N -0.45 -10.79 2.74 -122.19 -0.33 -11.12 16 16 C 0.04 0.85 6.64 59.85 0.40 1.24 16 17 C -0.31 -8.93 9.51 -14.93 -0.14 -9.07 16 18 H 0.11 3.47 7.82 -52.49 -0.41 3.06 16 19 C 0.06 1.58 5.25 -17.47 -0.09 1.49 16 20 N -0.87 -25.12 13.96 55.50 0.77 -24.34 16 21 Si 0.88 20.55 24.09 -169.99 -4.10 16.45 16 22 H -0.28 -5.92 6.81 56.52 0.38 -5.54 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.25 -5.86 6.51 56.52 0.37 -5.49 16 25 H 0.07 0.96 7.31 -51.93 -0.38 0.58 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.84 5.87 -51.93 -0.30 0.54 16 28 H 0.37 4.91 7.68 45.56 0.35 5.26 16 29 H 0.41 6.20 7.87 -40.82 -0.32 5.88 16 30 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.11 1.12 7.67 -51.93 -0.40 0.72 16 35 H 0.06 1.15 3.50 -51.93 -0.18 0.96 16 36 H 0.06 0.95 5.91 -51.93 -0.31 0.64 16 37 H 0.08 1.59 6.27 -51.93 -0.33 1.27 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -33.43 302.69 -4.89 -38.31 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -4.28 Total: 13.28 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.01 Total: 6.94 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.17 Total: -46.48 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.23 Total: -33.07 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.10 Total: 16.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.43 -4.89 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354429863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.571 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds