Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 O 1.42899 * 109.47037 * 119.99837 * 2 1 3 5 5 C 1.53007 * 109.47138 * 239.99824 * 2 1 3 6 6 H 1.08992 * 109.46730 * 296.84274 * 5 2 1 7 7 N 1.46496 * 109.47020 * 56.84321 * 5 2 1 8 8 C 1.34774 * 120.00340 * 274.99899 * 7 5 2 9 9 O 1.21278 * 119.99511 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00422 * 179.97438 * 8 7 5 11 11 C 1.52998 * 117.50163 * 248.62538 * 10 8 7 12 12 C 1.52994 * 117.49906 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.46822 * 176.84454 * 5 2 1 14 14 O 1.21292 * 120.00405 * 271.38720 * 13 5 2 15 15 N 1.34781 * 119.99969 * 91.39349 * 13 5 2 16 16 C 1.46498 * 120.00070 * 354.52884 * 15 13 5 17 17 C 1.37096 * 119.99739 * 174.53293 * 15 13 5 18 18 H 1.07995 * 120.00572 * 329.70664 * 17 15 13 19 19 C 1.38956 * 119.99955 * 149.98086 * 17 15 13 20 20 N 1.31407 * 119.99998 * 161.91438 * 19 17 15 21 21 Si 1.86804 * 119.99753 * 341.91981 * 19 17 15 22 22 H 1.48497 * 109.46952 * 90.02600 * 21 19 17 23 23 H 1.48496 * 109.46864 * 210.02466 * 21 19 17 24 24 H 1.48499 * 109.47282 * 330.02493 * 21 19 17 25 25 H 1.08998 * 109.47387 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47149 * 300.00531 * 1 2 3 27 27 H 1.09003 * 109.46968 * 60.00347 * 1 2 3 28 28 H 0.96696 * 114.00022 * 56.34212 * 4 2 1 29 29 H 0.97006 * 119.99613 * 94.99921 * 7 5 2 30 30 H 1.09005 * 115.54359 * 34.33004 * 10 8 7 31 31 H 1.08997 * 117.49874 * 359.97438 * 11 10 8 32 32 H 1.09002 * 117.49438 * 145.01844 * 11 10 8 33 33 H 1.09002 * 117.49920 * 214.98012 * 12 10 8 34 34 H 1.08999 * 117.49963 * 0.02562 * 12 10 8 35 35 H 1.09001 * 109.47245 * 275.23782 * 16 15 13 36 36 H 1.09002 * 109.46813 * 35.23327 * 16 15 13 37 37 H 1.09000 * 109.47126 * 155.23661 * 16 15 13 38 38 H 0.97002 * 120.00019 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 1 1.7236 -1.7639 -1.2213 7 7 1.4905 -0.0761 -2.4442 8 6 0.2706 -0.4255 -2.8982 9 8 -0.3725 -1.2738 -2.3171 10 6 -0.2949 0.2387 -4.1271 11 6 -1.4949 1.1688 -3.9385 12 6 -1.6846 -0.2012 -4.5916 13 6 3.5449 -0.6539 -1.2889 14 8 4.0961 0.2847 -1.8241 15 7 4.2785 -1.6367 -0.7298 16 6 3.6178 -2.7079 0.0200 17 6 5.6430 -1.6339 -0.8628 18 1 6.0990 -1.2055 -1.7431 19 6 6.4392 -2.1873 0.1325 20 7 7.6859 -2.5111 -0.1275 21 14 5.7371 -2.4710 1.8402 22 1 5.1390 -3.8284 1.9102 23 1 6.8226 -2.3559 2.8470 24 1 4.6918 -1.4544 2.1209 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6758 -1.5774 1.2616 29 1 2.0048 0.6027 -2.9087 30 1 0.4322 0.5039 -4.8947 31 1 -1.8758 1.3000 -2.9257 32 1 -1.5575 2.0463 -4.5822 33 1 -1.8722 -0.2254 -5.6651 34 1 -2.1901 -0.9707 -4.0082 35 1 3.4531 -2.3839 1.0476 36 1 2.6599 -2.9399 -0.4457 37 1 4.2486 -3.5968 0.0159 38 1 8.2418 -2.8971 0.5674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354429863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = -103.759602 kcal Electronic energy + Delta-G solvation = -22032.824419 eV Core-core repulsion = 18683.050901 eV Total energy + Delta-G solvation = -3349.773518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79747 -40.39010 -38.40418 -37.17617 -36.84094 -35.40100 -34.15561 -31.80779 -29.49677 -28.22753 -26.63612 -24.95864 -23.26122 -22.97778 -21.32077 -20.79195 -19.16515 -18.81696 -18.17543 -17.93451 -17.31659 -16.90788 -16.51709 -16.13246 -15.84143 -15.61212 -15.38977 -14.70621 -14.65517 -14.12464 -14.05483 -13.87325 -13.63090 -13.53966 -13.17919 -12.82937 -12.44435 -12.41664 -12.39300 -12.16087 -11.73910 -11.53779 -11.49714 -11.41850 -11.18410 -10.89532 -10.57792 -10.03617 -9.81650 -8.53621 -6.16419 1.21932 1.34636 1.43189 1.51011 1.67638 1.99037 2.18882 2.65198 2.93651 2.96365 3.37852 3.58776 3.66568 3.74577 3.84426 3.92149 4.03594 4.17912 4.24809 4.27583 4.39220 4.53302 4.70515 4.77351 4.83162 4.93360 4.97698 5.03687 5.18087 5.25879 5.29204 5.45258 5.94419 6.41668 6.47012 6.66113 6.83550 7.12511 7.22704 7.71145 8.62761 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031381 B = 0.005618 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.046106 B = 4982.951126 C = 5420.069992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 H 0.088 0.912 4 O -0.564 6.564 5 C 0.112 3.888 6 H 0.111 0.889 7 N -0.703 5.703 8 C 0.543 3.457 9 O -0.564 6.564 10 C -0.210 4.210 11 C -0.138 4.138 12 C -0.143 4.143 13 C 0.455 3.545 14 O -0.611 6.611 15 N -0.462 5.462 16 C 0.038 3.962 17 C -0.335 4.335 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.913 5.913 21 Si 0.952 3.048 22 H -0.236 1.236 23 H -0.296 1.296 24 H -0.249 1.249 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.387 0.613 29 H 0.412 0.588 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.643 2.684 -2.368 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.106 0.894 4 O -0.371 6.371 5 C 0.003 3.997 6 H 0.128 0.872 7 N -0.356 5.356 8 C 0.332 3.668 9 O -0.444 6.444 10 C -0.231 4.231 11 C -0.175 4.175 12 C -0.180 4.180 13 C 0.244 3.756 14 O -0.496 6.496 15 N -0.181 5.181 16 C -0.104 4.104 17 C -0.463 4.463 18 H 0.069 0.931 19 C -0.192 4.192 20 N -0.550 5.550 21 Si 0.774 3.226 22 H -0.160 1.160 23 H -0.223 1.223 24 H -0.173 1.173 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.237 0.763 29 H 0.249 0.751 30 H 0.157 0.843 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.312 2.974 -2.050 20.631 hybrid contribution 0.911 -0.327 0.160 0.981 sum -19.401 2.647 -1.890 19.672 Atomic orbital electron populations 1.22392 0.92956 1.03636 1.02500 1.22076 0.94849 0.95962 0.82276 0.89434 1.86715 1.74580 1.32492 1.43301 1.21521 0.89730 1.00225 0.88264 0.87179 1.45715 1.18800 1.42745 1.28371 1.20168 0.80020 0.81659 0.84944 1.90651 1.59951 1.33813 1.59941 1.22235 0.94416 1.08381 0.98047 1.23056 0.96334 0.94881 1.03235 1.23019 0.94174 0.98261 1.02551 1.20680 0.89361 0.82232 0.83335 1.90515 1.73982 1.34817 1.50283 1.43638 1.05559 1.20928 1.48021 1.22565 0.99324 0.91017 0.97476 1.18786 0.80897 1.41120 1.05486 0.93098 1.26159 0.95331 0.95131 1.02556 1.69829 1.09361 1.40061 1.35795 0.85922 0.78259 0.81037 0.77336 1.15958 1.22315 1.17271 0.91062 0.90873 0.92025 0.76325 0.75097 0.84336 0.88768 0.85307 0.85714 0.88851 0.90645 0.88474 0.90678 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 8.00 71.98 0.58 -3.27 16 2 C 0.11 3.32 3.33 30.60 0.10 3.43 16 3 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 4 O -0.56 -17.44 11.21 -148.98 -1.67 -19.11 16 5 C 0.11 3.80 1.98 44.25 0.09 3.89 16 6 H 0.11 3.52 5.39 -2.39 -0.01 3.51 16 7 N -0.70 -20.94 4.89 -446.11 -2.18 -23.12 16 8 C 0.54 14.40 5.86 87.66 0.51 14.91 16 9 O -0.56 -17.12 13.38 -3.02 -0.04 -17.16 16 10 C -0.21 -3.96 6.19 -11.54 -0.07 -4.03 16 11 C -0.14 -1.94 10.23 30.58 0.31 -1.62 16 12 C -0.14 -2.22 10.04 30.58 0.31 -1.91 16 13 C 0.46 21.01 6.55 87.66 0.57 21.59 16 14 O -0.61 -32.96 15.96 -3.07 -0.05 -33.01 16 15 N -0.46 -22.40 2.74 -658.89 -1.81 -24.20 16 16 C 0.04 1.41 6.64 127.77 0.85 2.25 16 17 C -0.34 -19.81 9.51 84.04 0.80 -19.01 16 18 H 0.05 3.51 7.82 -2.91 -0.02 3.49 16 19 C 0.01 0.58 5.25 84.93 0.45 1.03 16 20 N -0.91 -54.66 13.96 21.66 0.30 -54.36 16 21 Si 0.95 41.86 24.09 68.60 1.65 43.51 16 22 H -0.24 -8.84 6.81 99.48 0.68 -8.16 16 23 H -0.30 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.25 -10.79 6.51 99.48 0.65 -10.15 16 25 H 0.07 1.74 7.31 -2.39 -0.02 1.72 16 26 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 1.52 5.87 -2.39 -0.01 1.50 16 28 H 0.39 8.81 7.68 -74.06 -0.57 8.24 16 29 H 0.41 12.36 7.87 -92.70 -0.73 11.63 16 30 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.76 7.67 -2.39 -0.02 1.74 16 35 H 0.08 2.58 3.50 -2.39 -0.01 2.57 16 36 H 0.10 2.81 5.91 -2.39 -0.01 2.79 16 37 H 0.07 2.84 6.27 -2.39 -0.01 2.82 16 38 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -76.14 302.69 0.42 -75.71 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.28 Total: 34.50 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 4.49 Total: 17.25 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.69 Total: -101.68 kcal Atomic # 8 Polarization: -67.52 SS G_CDS: -1.76 Total: -69.28 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.65 Total: 43.51 kcal Total: -76.14 0.42 -75.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354429863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.047 kcal (2) G-P(sol) polarization free energy of solvation -76.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds