Wall clock time and date at job start Mon Mar 30 2020 00:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00181 * 2 1 4 4 C 1.53004 * 109.47060 * 173.98887 * 3 2 1 5 5 C 1.50696 * 109.47521 * 293.99243 * 3 2 1 6 6 O 1.21286 * 119.99813 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00258 * 179.97438 * 5 3 2 8 8 C 1.46500 * 120.00265 * 180.02562 * 7 5 3 9 9 C 1.50697 * 109.47526 * 179.97438 * 8 7 5 10 10 O 1.21299 * 119.99617 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.37093 * 120.00049 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00281 * 359.97438 * 12 11 9 14 14 C 1.38960 * 119.99918 * 180.02562 * 12 11 9 15 15 N 1.31404 * 119.99818 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99704 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47499 * 60.00046 * 16 14 12 18 18 H 1.48503 * 109.46753 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47755 * 299.99817 * 16 14 12 20 20 C 1.53006 * 109.46936 * 53.99437 * 3 2 1 21 21 C 1.52999 * 117.50142 * 127.78638 * 20 3 2 22 22 C 1.52994 * 117.50005 * 59.16270 * 20 3 2 23 23 H 1.08999 * 109.46408 * 55.81034 * 1 2 3 24 24 H 1.08993 * 109.46853 * 175.80895 * 1 2 3 25 25 H 1.08999 * 109.46915 * 295.81620 * 1 2 3 26 26 H 1.08999 * 109.46889 * 60.00305 * 4 3 2 27 27 H 1.09005 * 109.47104 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47149 * 299.99905 * 4 3 2 29 29 H 0.97002 * 119.99814 * 359.97438 * 7 5 3 30 30 H 1.09007 * 109.46649 * 299.99731 * 8 7 5 31 31 H 1.08997 * 109.47105 * 59.99071 * 8 7 5 32 32 H 0.97000 * 119.99922 * 0.02562 * 11 9 8 33 33 H 0.97002 * 119.99947 * 180.02562 * 15 14 12 34 34 H 1.09004 * 115.54457 * 273.49296 * 20 3 2 35 35 H 1.09000 * 117.49504 * 359.97438 * 21 20 3 36 36 H 1.08995 * 117.49659 * 145.01983 * 21 20 3 37 37 H 1.09007 * 117.49865 * 214.98446 * 22 20 3 38 38 H 1.09001 * 117.49925 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5283 1.1878 0.1511 5 6 1.6869 1.9994 -1.2980 6 8 1.0243 1.4317 -2.1404 7 7 2.1340 3.2508 -1.5227 8 6 1.8191 3.9256 -2.7844 9 6 2.4312 5.3027 -2.7839 10 8 3.0674 5.6833 -1.8238 11 7 2.2716 6.1115 -3.8501 12 6 2.8280 7.3644 -3.8494 13 1 3.3938 7.7036 -2.9943 14 6 2.6630 8.1985 -4.9485 15 7 1.9742 7.7860 -5.9888 16 14 3.4205 9.9060 -4.9472 17 1 4.8940 9.7939 -4.7999 18 1 3.1021 10.5897 -6.2265 19 1 2.8683 10.6918 -3.8147 20 6 1.4430 2.1163 1.1670 21 6 2.4414 2.7877 2.1121 22 6 1.6509 1.5635 2.5783 23 1 -0.3632 0.5775 -0.8501 24 1 -0.3633 -1.0249 -0.0751 25 1 -0.3633 0.4475 0.9251 26 1 3.9324 0.6101 -0.6803 27 1 3.9717 2.1836 0.1515 28 1 3.7622 0.6859 1.0900 29 1 2.6636 3.7049 -0.8488 30 1 2.2234 3.3483 -3.6159 31 1 0.7377 4.0090 -2.8918 32 1 1.7625 5.8073 -4.6177 33 1 1.8594 8.3681 -6.7562 34 1 0.5096 2.6415 0.9646 35 1 3.5024 2.6514 1.9028 36 1 2.1650 3.7549 2.5316 37 1 0.8544 1.7254 3.3047 38 1 2.1914 0.6220 2.6756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360620123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:59 Heat of formation + Delta-G solvation = -92.075535 kcal Electronic energy + Delta-G solvation = -21134.520115 eV Core-core repulsion = 17785.253256 eV Total energy + Delta-G solvation = -3349.266859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65095 -38.59192 -37.67683 -36.24078 -34.43884 -33.69783 -31.51427 -31.23756 -27.79419 -26.31838 -25.48904 -24.31812 -22.51995 -21.39781 -19.72212 -19.40181 -18.18541 -17.54543 -16.84415 -16.00918 -15.74910 -15.32407 -15.00756 -14.84522 -14.53213 -14.23803 -14.00613 -13.65730 -13.40809 -12.84789 -12.75676 -12.28746 -12.14564 -11.99482 -11.83992 -11.65331 -11.44211 -11.13762 -11.06942 -10.68977 -10.53924 -10.52505 -10.33827 -10.28128 -9.64959 -9.07152 -8.80586 -8.65783 -8.12730 -6.53687 -3.95875 2.68366 3.11983 3.19001 3.20874 3.27957 3.38834 3.71190 3.89257 4.08923 4.40456 4.60024 4.69201 4.82382 4.84437 4.99379 5.14670 5.22695 5.42343 5.44942 5.51378 5.59416 5.61612 5.72921 5.83867 5.86143 5.90185 5.92462 5.97023 6.03372 6.05600 6.63864 7.00157 7.43551 7.75984 7.89158 8.36793 8.43207 9.02004 9.36556 9.84326 10.63104 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033458 B = 0.003912 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.656947 B = 7156.502444 C = 7661.537697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.354 6.354 3 C 0.136 3.864 4 C -0.143 4.143 5 C 0.495 3.505 6 O -0.539 6.539 7 N -0.699 5.699 8 C 0.107 3.893 9 C 0.428 3.572 10 O -0.597 6.597 11 N -0.548 5.548 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.027 3.973 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.190 4.190 21 C -0.170 4.170 22 C -0.161 4.161 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.412 0.588 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -11.358 12.383 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.272 6.272 3 C 0.093 3.907 4 C -0.200 4.200 5 C 0.280 3.720 6 O -0.417 6.417 7 N -0.354 5.354 8 C -0.021 4.021 9 C 0.213 3.787 10 O -0.484 6.484 11 N -0.183 5.183 12 C -0.436 4.436 13 H 0.123 0.877 14 C -0.176 4.176 15 N -0.535 5.535 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.209 4.209 21 C -0.207 4.207 22 C -0.198 4.198 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.250 0.750 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.141 -11.561 12.200 16.847 hybrid contribution -0.106 1.173 -0.402 1.244 sum -1.248 -10.389 11.799 15.770 Atomic orbital electron populations 1.22886 0.80700 1.02897 1.00942 1.87955 1.20600 1.24203 1.94423 1.20834 0.95427 0.84176 0.90247 1.21931 0.90639 1.03597 1.03802 1.21179 0.79986 0.81698 0.89146 1.90664 1.39207 1.65306 1.46483 1.45764 1.54729 1.15012 1.19898 1.20981 1.00966 0.93167 0.86986 1.19717 0.86865 0.86806 0.85294 1.90494 1.46333 1.76029 1.35505 1.41788 1.46661 1.13996 1.15823 1.19685 1.30711 0.89709 1.03472 0.87700 1.25328 0.96938 1.00434 0.94941 1.69604 1.39536 1.38108 1.06206 0.85869 0.79480 0.81060 0.77540 1.19749 1.20837 1.19768 1.22766 1.02186 1.04522 0.91404 1.23209 0.98002 0.97407 1.02035 1.22888 1.03228 0.98413 0.95224 0.91831 0.89943 0.94188 0.90990 0.89810 0.90531 0.74973 0.89781 0.89914 0.77041 0.91504 0.87307 0.87513 0.88138 0.88649 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.17 101.05 1.03 1.30 16 2 O -0.35 -4.96 10.02 -55.14 -0.55 -5.51 16 3 C 0.14 1.78 0.80 -91.77 -0.07 1.71 16 4 C -0.14 -1.57 7.33 37.16 0.27 -1.30 16 5 C 0.50 8.06 6.19 -10.99 -0.07 7.99 16 6 O -0.54 -10.32 14.39 -14.36 -0.21 -10.53 16 7 N -0.70 -11.66 5.32 -61.47 -0.33 -11.99 16 8 C 0.11 1.97 6.15 -5.20 -0.03 1.94 16 9 C 0.43 9.70 7.85 -10.99 -0.09 9.61 16 10 O -0.60 -14.99 15.24 5.54 0.08 -14.91 16 11 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 12 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 13 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.74 13.05 55.50 0.72 -23.02 16 16 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 C -0.19 -2.12 3.55 -90.62 -0.32 -2.44 16 21 C -0.17 -1.60 9.56 -26.73 -0.26 -1.86 16 22 C -0.16 -1.43 9.70 -26.74 -0.26 -1.69 16 23 H 0.06 0.91 5.87 -51.93 -0.31 0.61 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.42 7.07 -51.93 -0.37 0.06 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 28 H 0.08 0.70 7.09 -51.93 -0.37 0.33 16 29 H 0.41 6.72 6.75 -40.82 -0.28 6.45 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.11 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.11 0.93 5.84 -51.93 -0.30 0.62 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.10 0.87 7.66 -51.93 -0.40 0.47 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -30.86 317.70 -5.75 -36.61 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.14 Total: 15.31 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.04 Total: 7.45 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.34 Total: -48.54 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.67 Total: -30.94 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.86 -5.75 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360620123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.468 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds