Wall clock time and date at job start Mon Mar 30 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00181 * 2 1 4 4 C 1.53004 * 109.47060 * 173.98887 * 3 2 1 5 5 C 1.50696 * 109.47521 * 293.99243 * 3 2 1 6 6 O 1.21286 * 119.99813 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00258 * 179.97438 * 5 3 2 8 8 C 1.46500 * 120.00265 * 180.02562 * 7 5 3 9 9 C 1.50697 * 109.47526 * 179.97438 * 8 7 5 10 10 O 1.21299 * 119.99617 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.37093 * 120.00049 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00281 * 359.97438 * 12 11 9 14 14 C 1.38960 * 119.99918 * 180.02562 * 12 11 9 15 15 N 1.31404 * 119.99818 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99704 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47499 * 60.00046 * 16 14 12 18 18 H 1.48503 * 109.46753 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47755 * 299.99817 * 16 14 12 20 20 C 1.53006 * 109.46936 * 53.99437 * 3 2 1 21 21 C 1.52999 * 117.50142 * 127.78638 * 20 3 2 22 22 C 1.52994 * 117.50005 * 59.16270 * 20 3 2 23 23 H 1.08999 * 109.46408 * 55.81034 * 1 2 3 24 24 H 1.08993 * 109.46853 * 175.80895 * 1 2 3 25 25 H 1.08999 * 109.46915 * 295.81620 * 1 2 3 26 26 H 1.08999 * 109.46889 * 60.00305 * 4 3 2 27 27 H 1.09005 * 109.47104 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47149 * 299.99905 * 4 3 2 29 29 H 0.97002 * 119.99814 * 359.97438 * 7 5 3 30 30 H 1.09007 * 109.46649 * 299.99731 * 8 7 5 31 31 H 1.08997 * 109.47105 * 59.99071 * 8 7 5 32 32 H 0.97000 * 119.99922 * 0.02562 * 11 9 8 33 33 H 0.97002 * 119.99947 * 180.02562 * 15 14 12 34 34 H 1.09004 * 115.54457 * 273.49296 * 20 3 2 35 35 H 1.09000 * 117.49504 * 359.97438 * 21 20 3 36 36 H 1.08995 * 117.49659 * 145.01983 * 21 20 3 37 37 H 1.09007 * 117.49865 * 214.98446 * 22 20 3 38 38 H 1.09001 * 117.49925 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5283 1.1878 0.1511 5 6 1.6869 1.9994 -1.2980 6 8 1.0243 1.4317 -2.1404 7 7 2.1340 3.2508 -1.5227 8 6 1.8191 3.9256 -2.7844 9 6 2.4312 5.3027 -2.7839 10 8 3.0674 5.6833 -1.8238 11 7 2.2716 6.1115 -3.8501 12 6 2.8280 7.3644 -3.8494 13 1 3.3938 7.7036 -2.9943 14 6 2.6630 8.1985 -4.9485 15 7 1.9742 7.7860 -5.9888 16 14 3.4205 9.9060 -4.9472 17 1 4.8940 9.7939 -4.7999 18 1 3.1021 10.5897 -6.2265 19 1 2.8683 10.6918 -3.8147 20 6 1.4430 2.1163 1.1670 21 6 2.4414 2.7877 2.1121 22 6 1.6509 1.5635 2.5783 23 1 -0.3632 0.5775 -0.8501 24 1 -0.3633 -1.0249 -0.0751 25 1 -0.3633 0.4475 0.9251 26 1 3.9324 0.6101 -0.6803 27 1 3.9717 2.1836 0.1515 28 1 3.7622 0.6859 1.0900 29 1 2.6636 3.7049 -0.8488 30 1 2.2234 3.3483 -3.6159 31 1 0.7377 4.0090 -2.8918 32 1 1.7625 5.8073 -4.6177 33 1 1.8594 8.3681 -6.7562 34 1 0.5096 2.6415 0.9646 35 1 3.5024 2.6514 1.9028 36 1 2.1650 3.7549 2.5316 37 1 0.8544 1.7254 3.3047 38 1 2.1914 0.6220 2.6756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360620123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:58 Heat of formation + Delta-G solvation = -113.970902 kcal Electronic energy + Delta-G solvation = -21135.469569 eV Core-core repulsion = 17785.253256 eV Total energy + Delta-G solvation = -3350.216313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.81679 -40.28303 -38.96734 -37.21405 -36.21870 -35.28721 -33.39908 -32.34041 -29.32096 -27.32617 -26.82323 -25.86056 -23.23459 -22.55979 -21.41078 -20.67254 -20.06956 -18.82428 -17.86066 -17.50584 -17.06521 -16.73118 -16.58137 -16.26330 -15.95092 -15.61923 -15.31512 -15.22101 -14.52898 -14.11475 -13.80516 -13.60586 -13.58187 -13.54313 -13.14304 -12.90248 -12.75031 -12.47480 -12.26544 -12.13898 -12.03829 -11.57195 -11.56474 -11.37225 -11.19118 -10.57950 -10.31846 -10.15793 -10.09106 -8.51584 -6.01997 1.37178 1.41722 1.42889 1.53707 1.89465 1.91376 2.30334 2.51041 3.02269 3.08896 3.15574 3.44433 3.59917 3.81664 3.99178 4.15066 4.19696 4.33865 4.38093 4.39133 4.53234 4.61883 4.66767 4.71289 4.85018 4.88651 4.99012 5.04194 5.21917 5.23174 5.28923 5.37639 5.90191 5.98081 6.42377 6.48671 7.02133 7.05548 7.42728 7.92487 8.65108 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033458 B = 0.003912 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.656947 B = 7156.502444 C = 7661.537697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.366 6.366 3 C 0.140 3.860 4 C -0.142 4.142 5 C 0.493 3.507 6 O -0.571 6.571 7 N -0.697 5.697 8 C 0.118 3.882 9 C 0.433 3.567 10 O -0.620 6.620 11 N -0.559 5.559 12 C -0.338 4.338 13 H 0.088 0.912 14 C -0.010 4.010 15 N -0.917 5.917 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.269 1.269 20 C -0.208 4.208 21 C -0.166 4.166 22 C -0.142 4.142 23 H 0.038 0.962 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.415 0.585 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.398 0.602 33 H 0.280 0.720 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -11.521 13.653 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.284 6.284 3 C 0.097 3.903 4 C -0.199 4.199 5 C 0.280 3.720 6 O -0.451 6.451 7 N -0.352 5.352 8 C -0.010 4.010 9 C 0.220 3.780 10 O -0.508 6.508 11 N -0.194 5.194 12 C -0.467 4.467 13 H 0.106 0.894 14 C -0.210 4.210 15 N -0.557 5.557 16 Si 0.820 3.180 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.227 4.227 21 C -0.203 4.203 22 C -0.179 4.179 23 H 0.056 0.944 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.254 0.746 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.751 -11.743 13.481 17.894 hybrid contribution -0.262 1.160 -0.769 1.416 sum -1.013 -10.583 12.712 16.572 Atomic orbital electron populations 1.22949 0.80067 1.03763 1.00699 1.87937 1.21379 1.24742 1.94325 1.20904 0.96683 0.83792 0.88901 1.21992 0.88995 1.04170 1.04738 1.21915 0.78903 0.81123 0.90065 1.90648 1.40576 1.65914 1.47917 1.45756 1.54922 1.15283 1.19223 1.20806 1.01094 0.90715 0.88372 1.20333 0.85662 0.87789 0.84190 1.90471 1.47157 1.76978 1.36218 1.41841 1.47166 1.13901 1.16499 1.19723 1.32101 0.91188 1.03719 0.89395 1.26135 0.96944 1.03769 0.94201 1.69674 1.40013 1.39395 1.06600 0.84924 0.78624 0.76540 0.77893 1.19415 1.19721 1.19417 1.22641 1.02431 1.05767 0.91859 1.23313 0.98207 0.97907 1.00891 1.22984 1.03118 0.98410 0.93343 0.94362 0.88224 0.92443 0.91803 0.89206 0.88172 0.74624 0.88925 0.89001 0.76786 0.91062 0.88455 0.86610 0.87889 0.87288 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.17 113.37 1.15 1.65 16 2 O -0.37 -9.77 10.02 -129.94 -1.30 -11.07 16 3 C 0.14 3.50 0.80 -11.54 -0.01 3.49 16 4 C -0.14 -2.88 7.33 71.98 0.53 -2.35 16 5 C 0.49 15.89 6.19 87.66 0.54 16.43 16 6 O -0.57 -21.98 14.39 15.99 0.23 -21.74 16 7 N -0.70 -23.00 5.32 -466.79 -2.49 -25.49 16 8 C 0.12 4.34 6.15 85.63 0.53 4.86 16 9 C 0.43 19.79 7.85 87.66 0.69 20.48 16 10 O -0.62 -31.33 15.24 -3.09 -0.05 -31.38 16 11 N -0.56 -27.86 5.29 -306.98 -1.62 -29.49 16 12 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 13 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 14 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 15 N -0.92 -48.52 13.05 21.67 0.28 -48.23 16 16 Si 1.00 41.28 29.55 68.60 2.03 43.31 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 C -0.21 -4.31 3.55 -10.79 -0.04 -4.34 16 21 C -0.17 -2.76 9.56 30.59 0.29 -2.47 16 22 C -0.14 -2.13 9.70 30.59 0.30 -1.83 16 23 H 0.04 1.10 5.87 -2.39 -0.01 1.08 16 24 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.13 7.07 -2.39 -0.02 1.11 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.70 6.44 -2.38 -0.02 1.68 16 28 H 0.10 1.55 7.09 -2.39 -0.02 1.53 16 29 H 0.41 13.33 6.75 -92.71 -0.63 12.71 16 30 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 31 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 33 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.10 2.23 8.10 -2.38 -0.02 2.21 16 35 H 0.12 1.71 5.84 -2.39 -0.01 1.69 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.11 1.49 7.66 -2.39 -0.02 1.48 16 Total: -1.00 -65.57 317.70 2.08 -63.49 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.26 Total: 42.34 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.26 Total: 18.27 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -3.83 Total: -103.21 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -1.12 Total: -64.20 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -65.57 2.08 -63.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360620123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.486 kcal (2) G-P(sol) polarization free energy of solvation -65.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds