Wall clock time and date at job start Mon Mar 30 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99634 * 2 1 4 4 H 1.48496 * 109.47257 * 270.00512 * 3 2 1 5 5 H 1.48499 * 109.46633 * 30.00517 * 3 2 1 6 6 H 1.48503 * 109.46955 * 150.00300 * 3 2 1 7 7 C 1.37871 * 120.00721 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99626 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00690 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46897 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00302 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99779 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99660 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46497 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99389 * 180.02562 * 15 14 13 18 18 C 1.47164 * 120.94464 * 359.97438 * 17 15 14 19 19 C 1.53300 * 108.37481 * 230.47489 * 18 17 15 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97899 * 180.02562 * 17 15 14 23 23 H 0.96991 * 120.00765 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46742 * 59.99380 * 9 7 2 25 25 H 1.09003 * 109.46604 * 300.00231 * 9 7 2 26 26 H 1.08993 * 109.47594 * 60.00370 * 10 9 7 27 27 H 1.09003 * 109.47418 * 299.99718 * 10 9 7 28 28 H 0.97000 * 119.99831 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.46680 * 60.00313 * 14 13 11 30 30 H 1.08994 * 109.47265 * 300.00147 * 14 13 11 31 31 H 1.08996 * 109.64217 * 110.78153 * 18 17 15 32 32 H 1.08999 * 109.72598 * 350.21805 * 18 17 15 33 33 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 34 34 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 35 35 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 36 36 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 37 37 H 1.09004 * 109.67827 * 9.75528 * 22 17 15 38 38 H 1.09000 * 109.68235 * 249.19910 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0023 11 6 5.5287 -2.6362 -0.0022 12 8 6.1351 -1.5858 -0.0018 13 7 6.2027 -3.8034 -0.0037 14 6 7.6677 -3.8032 -0.0042 15 6 8.1701 -5.2240 -0.0052 16 8 7.3821 -6.1459 -0.0060 17 7 9.4952 -5.4701 -0.0053 18 6 10.4697 -4.3674 -0.0050 19 6 11.4835 -4.6180 -1.1273 20 8 12.0168 -5.9378 -0.9951 21 6 11.0451 -6.9779 -1.1291 22 6 10.0096 -6.8489 -0.0069 23 1 -0.4851 0.8399 0.0004 24 1 3.8752 -0.6802 0.8888 25 1 3.8745 -0.6798 -0.8912 26 1 3.6582 -3.1496 -0.8924 27 1 3.6588 -3.1508 0.8875 28 1 5.7177 -4.6434 -0.0044 29 1 8.0312 -3.2903 0.8862 30 1 8.0307 -3.2884 -0.8937 31 1 10.9853 -4.3343 0.9548 32 1 9.9557 -3.4221 -0.1790 33 1 12.2918 -3.8901 -1.0571 34 1 10.9886 -4.5204 -2.0935 35 1 10.5478 -6.8891 -2.0950 36 1 11.5381 -7.9477 -1.0612 37 1 9.1901 -7.5462 -0.1817 38 1 10.4792 -7.0666 0.9524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360768590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:41 Heat of formation + Delta-G solvation = -116.605607 kcal Electronic energy + Delta-G solvation = -20365.946435 eV Core-core repulsion = 17015.615873 eV Total energy + Delta-G solvation = -3350.330562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87111 -39.36970 -38.53631 -35.28194 -34.40071 -33.47720 -32.08246 -31.31947 -29.22513 -27.60608 -25.65539 -24.49622 -22.62503 -21.22859 -20.01728 -19.59654 -17.86891 -17.21158 -16.88478 -16.48688 -16.38907 -15.87670 -15.68654 -15.38724 -15.20419 -14.96593 -14.11376 -14.03850 -13.78786 -13.17571 -13.07717 -12.97227 -12.55571 -12.33169 -12.19133 -11.93662 -11.41531 -11.27419 -10.95768 -10.73150 -10.29419 -10.15095 -10.04624 -9.79116 -9.33705 -9.17122 -9.13978 -9.00909 -8.49975 -6.01844 -4.00707 2.12650 2.25264 3.04965 3.26946 3.38045 3.40164 3.44762 3.55034 3.97404 4.17281 4.42406 4.51409 4.51477 4.62018 4.70237 4.91068 5.06407 5.07062 5.09136 5.19112 5.23719 5.33373 5.37972 5.49710 5.84231 6.09762 6.10974 6.40085 6.53268 6.69853 6.79108 7.36085 7.43654 7.60935 7.72474 7.79728 8.49323 8.59139 9.01468 9.60876 11.11046 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.045456 B = 0.003086 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.828196 B = 9072.319611 C = 9554.174838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.121 4.121 11 C 0.514 3.486 12 O -0.542 6.542 13 N -0.732 5.732 14 C 0.102 3.898 15 C 0.515 3.485 16 O -0.531 6.531 17 N -0.617 5.617 18 C 0.068 3.932 19 C 0.046 3.954 20 O -0.379 6.379 21 C 0.048 3.952 22 C 0.077 3.923 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.411 0.589 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.386 -13.265 -1.224 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.419 6.419 13 N -0.389 5.389 14 C -0.026 4.026 15 C 0.303 3.697 16 O -0.407 6.407 17 N -0.352 5.352 18 C -0.055 4.055 19 C -0.031 4.031 20 O -0.298 6.298 21 C -0.030 4.030 22 C -0.046 4.046 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.248 0.752 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.420 -12.913 -1.184 28.536 hybrid contribution -0.023 0.538 -0.031 0.540 sum 25.397 -12.375 -1.215 28.277 Atomic orbital electron populations 1.69908 1.06300 1.26966 1.51081 1.24976 0.94712 0.99233 0.94361 0.86786 0.80600 0.83388 0.78707 1.20257 1.21465 1.18535 1.21120 0.89269 0.94617 1.51290 0.90882 1.19376 0.96449 0.90102 0.97673 1.21673 0.87363 1.03356 1.03675 1.21607 0.91727 0.82289 0.74043 1.90647 1.70779 1.31429 1.48997 1.45994 1.04650 1.10560 1.77733 1.20999 0.84213 0.92959 1.04401 1.20732 0.81747 0.91738 0.75435 1.90703 1.54403 1.46107 1.49461 1.48074 1.05383 1.07468 1.74324 1.22572 0.91456 0.90579 1.00933 1.23006 0.97560 0.85212 0.97343 1.87984 1.34096 1.14381 1.93294 1.23005 0.90466 0.92013 0.97511 1.22318 0.98502 0.83702 1.00056 0.92716 0.95779 0.96245 0.89375 0.89348 0.75195 0.88589 0.88677 0.89808 0.88097 0.87182 0.92275 0.92429 0.87380 0.87810 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.53 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 11 C 0.51 9.37 7.83 -10.98 -0.09 9.29 16 12 O -0.54 -11.58 15.98 5.56 0.09 -11.49 16 13 N -0.73 -10.48 5.53 -61.47 -0.34 -10.82 16 14 C 0.10 1.16 4.53 -5.19 -0.02 1.14 16 15 C 0.52 5.72 7.78 -10.98 -0.09 5.63 16 16 O -0.53 -7.46 15.14 5.56 0.08 -7.38 16 17 N -0.62 -5.21 3.02 -172.29 -0.52 -5.73 16 18 C 0.07 0.40 6.54 -3.52 -0.02 0.38 16 19 C 0.05 0.26 6.98 37.31 0.26 0.52 16 20 O -0.38 -2.84 10.74 -35.23 -0.38 -3.22 16 21 C 0.05 0.29 6.98 37.29 0.26 0.55 16 22 C 0.08 0.56 6.64 -3.55 -0.02 0.54 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 25 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 26 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 27 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.41 5.55 7.44 -40.82 -0.30 5.24 16 29 H 0.10 1.03 8.01 -51.93 -0.42 0.61 16 30 H 0.10 1.00 7.66 -51.93 -0.40 0.60 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.51 6.05 -51.93 -0.31 0.19 16 33 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.85 7.08 -51.93 -0.37 0.48 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -36.07 316.33 -6.13 -42.19 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.53 Total: -0.75 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.40 Total: 1.94 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.09 Total: -43.94 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.21 Total: -22.09 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.07 -6.13 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360768590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.415 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds