Wall clock time and date at job start Mon Mar 30 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99634 * 2 1 4 4 H 1.48496 * 109.47257 * 270.00512 * 3 2 1 5 5 H 1.48499 * 109.46633 * 30.00517 * 3 2 1 6 6 H 1.48503 * 109.46955 * 150.00300 * 3 2 1 7 7 C 1.37871 * 120.00721 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99626 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00690 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46897 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00302 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99779 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99660 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46497 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99389 * 180.02562 * 15 14 13 18 18 C 1.47164 * 120.94464 * 359.97438 * 17 15 14 19 19 C 1.53300 * 108.37481 * 230.47489 * 18 17 15 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97899 * 180.02562 * 17 15 14 23 23 H 0.96991 * 120.00765 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46742 * 59.99380 * 9 7 2 25 25 H 1.09003 * 109.46604 * 300.00231 * 9 7 2 26 26 H 1.08993 * 109.47594 * 60.00370 * 10 9 7 27 27 H 1.09003 * 109.47418 * 299.99718 * 10 9 7 28 28 H 0.97000 * 119.99831 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.46680 * 60.00313 * 14 13 11 30 30 H 1.08994 * 109.47265 * 300.00147 * 14 13 11 31 31 H 1.08996 * 109.64217 * 110.78153 * 18 17 15 32 32 H 1.08999 * 109.72598 * 350.21805 * 18 17 15 33 33 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 34 34 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 35 35 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 36 36 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 37 37 H 1.09004 * 109.67827 * 9.75528 * 22 17 15 38 38 H 1.09000 * 109.68235 * 249.19910 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0023 11 6 5.5287 -2.6362 -0.0022 12 8 6.1351 -1.5858 -0.0018 13 7 6.2027 -3.8034 -0.0037 14 6 7.6677 -3.8032 -0.0042 15 6 8.1701 -5.2240 -0.0052 16 8 7.3821 -6.1459 -0.0060 17 7 9.4952 -5.4701 -0.0053 18 6 10.4697 -4.3674 -0.0050 19 6 11.4835 -4.6180 -1.1273 20 8 12.0168 -5.9378 -0.9951 21 6 11.0451 -6.9779 -1.1291 22 6 10.0096 -6.8489 -0.0069 23 1 -0.4851 0.8399 0.0004 24 1 3.8752 -0.6802 0.8888 25 1 3.8745 -0.6798 -0.8912 26 1 3.6582 -3.1496 -0.8924 27 1 3.6588 -3.1508 0.8875 28 1 5.7177 -4.6434 -0.0044 29 1 8.0312 -3.2903 0.8862 30 1 8.0307 -3.2884 -0.8937 31 1 10.9853 -4.3343 0.9548 32 1 9.9557 -3.4221 -0.1790 33 1 12.2918 -3.8901 -1.0571 34 1 10.9886 -4.5204 -2.0935 35 1 10.5478 -6.8891 -2.0950 36 1 11.5381 -7.9477 -1.0612 37 1 9.1901 -7.5462 -0.1817 38 1 10.4792 -7.0666 0.9524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360768590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:41 Heat of formation + Delta-G solvation = -144.698136 kcal Electronic energy + Delta-G solvation = -20367.164619 eV Core-core repulsion = 17015.615873 eV Total energy + Delta-G solvation = -3351.548746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67201 -40.57584 -39.36805 -35.96884 -35.73269 -35.42584 -33.35669 -32.57988 -30.18462 -28.64966 -27.20809 -25.07944 -23.51611 -22.80137 -21.36707 -20.43524 -19.32097 -18.46931 -17.94142 -17.31460 -17.25359 -17.09298 -16.50412 -16.30186 -16.21037 -15.98403 -15.84790 -14.99367 -14.95585 -14.68589 -14.31499 -14.26532 -13.55619 -13.50911 -13.38390 -12.88222 -12.85198 -12.38351 -12.12476 -11.95970 -11.82194 -11.75065 -11.39732 -11.31335 -11.08726 -10.88765 -10.77179 -10.26108 -9.74479 -8.30158 -6.33862 1.28173 1.35738 1.37253 1.50099 1.52375 1.61747 2.26380 2.36712 2.83642 3.05416 3.18853 3.69423 3.90498 3.96516 4.07409 4.10838 4.17949 4.26370 4.27350 4.40475 4.44594 4.48872 4.62387 4.72823 4.81154 4.89576 4.97802 5.17765 5.27316 5.38397 5.45552 5.61800 6.04679 6.07520 6.24166 6.44639 6.72772 6.80734 7.18809 7.31493 8.85728 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.045456 B = 0.003086 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.828196 B = 9072.319611 C = 9554.174838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.006 3.994 10 C -0.118 4.118 11 C 0.523 3.477 12 O -0.575 6.575 13 N -0.718 5.718 14 C 0.100 3.900 15 C 0.517 3.483 16 O -0.567 6.567 17 N -0.612 5.612 18 C 0.063 3.937 19 C 0.044 3.956 20 O -0.394 6.394 21 C 0.051 3.949 22 C 0.074 3.926 23 H 0.267 0.733 24 H 0.014 0.986 25 H 0.013 0.987 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.416 0.584 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.835 -13.102 -1.261 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.570 4.570 8 H 0.065 0.935 9 C -0.032 4.032 10 C -0.158 4.158 11 C 0.311 3.689 12 O -0.455 6.455 13 N -0.374 5.374 14 C -0.027 4.027 15 C 0.305 3.695 16 O -0.446 6.446 17 N -0.346 5.346 18 C -0.059 4.059 19 C -0.033 4.033 20 O -0.312 6.312 21 C -0.026 4.026 22 C -0.048 4.048 23 H 0.076 0.924 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.254 0.746 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.111 0.889 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 27.923 -12.789 -1.224 30.737 hybrid contribution -0.752 0.380 -0.016 0.842 sum 27.171 -12.409 -1.241 29.896 Atomic orbital electron populations 1.70030 1.07942 1.28163 1.52512 1.25864 0.95536 1.03103 0.94179 0.85761 0.79292 0.79048 0.79212 1.19246 1.20513 1.18110 1.21447 0.91409 0.93669 1.50450 0.93524 1.19222 0.93791 0.93418 0.96721 1.21503 0.89077 1.00223 1.05007 1.21081 0.90939 0.82760 0.74091 1.90636 1.71103 1.32676 1.51057 1.45764 1.06203 1.09499 1.75895 1.21193 0.82089 0.93673 1.05721 1.20625 0.82452 0.91039 0.75350 1.90693 1.55513 1.46851 1.51575 1.48166 1.04908 1.08771 1.72722 1.22805 0.91100 0.90119 1.01839 1.23154 0.98142 0.84971 0.97018 1.87971 1.34787 1.15201 1.93291 1.23051 0.90113 0.92763 0.96682 1.22426 0.98408 0.82839 1.01115 0.92378 0.96746 0.96857 0.88118 0.88171 0.74582 0.87320 0.87238 0.88618 0.87022 0.85080 0.92415 0.92824 0.85448 0.88944 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.44 0.30 -59.39 16 2 C 0.01 0.63 5.47 84.65 0.46 1.10 16 3 Si 0.94 46.41 27.47 68.60 1.88 48.30 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 7 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 8 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 9 C 0.01 0.32 3.33 29.85 0.10 0.42 16 10 C -0.12 -4.55 5.64 29.85 0.17 -4.38 16 11 C 0.52 18.26 7.83 87.66 0.69 18.95 16 12 O -0.58 -23.69 15.98 -3.04 -0.05 -23.74 16 13 N -0.72 -19.32 5.53 -466.78 -2.58 -21.90 16 14 C 0.10 2.07 4.53 85.63 0.39 2.46 16 15 C 0.52 10.66 7.78 87.66 0.68 11.35 16 16 O -0.57 -15.48 15.14 -3.02 -0.05 -15.53 16 17 N -0.61 -9.18 3.02 -817.38 -2.47 -11.65 16 18 C 0.06 0.59 6.54 86.35 0.56 1.15 16 19 C 0.04 0.38 6.98 72.08 0.50 0.89 16 20 O -0.39 -5.03 10.74 -148.98 -1.60 -6.63 16 21 C 0.05 0.54 6.98 72.07 0.50 1.04 16 22 C 0.07 0.97 6.64 86.34 0.57 1.54 16 23 H 0.27 15.73 8.31 -92.72 -0.77 14.96 16 24 H 0.01 0.73 7.16 -2.39 -0.02 0.71 16 25 H 0.01 0.66 7.53 -2.39 -0.02 0.64 16 26 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 27 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 28 H 0.42 10.63 7.44 -92.71 -0.69 9.94 16 29 H 0.11 2.04 8.01 -2.39 -0.02 2.02 16 30 H 0.11 2.02 7.66 -2.39 -0.02 2.00 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.80 6.05 -2.39 -0.01 0.79 16 33 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 1.45 7.08 -2.38 -0.02 1.43 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.04 316.33 0.64 -76.40 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.32 Total: 10.32 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.88 Total: 3.82 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -4.75 Total: -92.94 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -1.69 Total: -45.89 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal Total: -77.04 0.64 -76.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360768590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.297 kcal (2) G-P(sol) polarization free energy of solvation -77.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds