Wall clock time and date at job start Mon Mar 30 2020 02:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.64254 * 300.69392 * 5 3 2 7 7 C 1.55155 * 110.72295 * 63.83875 * 5 3 2 8 8 C 1.55125 * 101.48552 * 153.73244 * 7 5 3 9 9 N 1.47423 * 104.94256 * 323.22030 * 8 7 5 10 10 C 1.34776 * 125.64814 * 204.03708 * 9 8 7 11 11 O 1.21590 * 120.00066 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00289 * 359.96196 * 10 9 8 13 13 C 1.46500 * 120.00278 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46973 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00102 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99767 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00118 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46699 * 90.00226 * 18 16 14 20 20 H 1.48492 * 109.47428 * 209.99726 * 18 16 14 21 21 H 1.48495 * 109.47500 * 330.00368 * 18 16 14 22 22 C 1.47022 * 108.70259 * 24.00794 * 9 8 7 23 23 H 1.09005 * 110.00788 * 239.44776 * 22 9 8 24 24 C 1.53000 * 109.88461 * 118.35721 * 22 9 8 25 25 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 26 26 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 28 28 H 1.08999 * 111.00521 * 271.94163 * 7 5 3 29 29 H 1.09000 * 111.00540 * 35.79137 * 7 5 3 30 30 H 1.08997 * 110.41726 * 204.29565 * 8 7 5 31 31 H 1.08995 * 110.20682 * 82.04682 * 8 7 5 32 32 H 0.97003 * 119.99822 * 359.97438 * 12 10 9 33 33 H 1.08995 * 109.46977 * 299.99726 * 13 12 10 34 34 H 1.08993 * 109.47091 * 59.99929 * 13 12 10 35 35 H 0.97004 * 119.99786 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.46938 * 302.19012 * 24 22 9 37 37 H 1.08993 * 109.47315 * 62.18730 * 24 22 9 38 38 H 1.08997 * 109.47099 * 182.19041 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9776 0.7748 0.8762 7 6 4.1475 0.6649 -1.3034 8 6 5.4939 1.4255 -1.4268 9 7 5.2033 2.7916 -0.9547 10 6 5.8930 3.9008 -1.2869 11 8 5.5620 4.9804 -0.8360 12 7 6.9499 3.8133 -2.1187 13 6 7.7000 5.0190 -2.4793 14 6 8.8232 4.6509 -3.4141 15 1 8.9645 3.6217 -3.7096 16 6 9.6706 5.6279 -3.8921 17 7 9.4982 6.8812 -3.5326 18 14 11.0634 5.1716 -5.0502 19 1 10.5852 5.2488 -6.4540 20 1 12.1944 6.1147 -4.8601 21 1 11.5176 3.7884 -4.7575 22 6 4.0361 2.7436 -0.0620 23 1 3.2379 3.3718 -0.4576 24 6 4.4304 3.2227 1.3365 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.3099 -0.4074 -1.1943 29 1 3.5015 0.8758 -2.1557 30 1 5.8256 1.4455 -2.4649 31 1 6.2494 0.9584 -0.7952 32 1 7.2143 2.9520 -2.4780 33 1 7.0343 5.7269 -2.9730 34 1 8.1110 5.4742 -1.5784 35 1 10.0941 7.5686 -3.8691 36 1 5.2408 2.6017 1.7182 37 1 4.7609 4.2601 1.2853 38 1 3.5706 3.1477 2.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426455822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:42 Heat of formation + Delta-G solvation = -114.711335 kcal Electronic energy + Delta-G solvation = -20965.195352 eV Core-core repulsion = 17614.946932 eV Total energy + Delta-G solvation = -3350.248420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05548 -39.63124 -37.45908 -36.53037 -34.17154 -32.57455 -31.65625 -31.18634 -28.36540 -27.02814 -26.19389 -23.41681 -22.62711 -21.96495 -20.38768 -19.12232 -18.38368 -17.50609 -17.02163 -16.50660 -16.01452 -15.70233 -15.03127 -14.56203 -14.30496 -14.06410 -13.82225 -13.37120 -13.22713 -13.02810 -12.73876 -12.56499 -12.24948 -12.01503 -11.88623 -11.67084 -11.57069 -11.14004 -11.09750 -10.93797 -10.91119 -10.83576 -10.55287 -10.27670 -9.35353 -9.33591 -8.71061 -8.39913 -7.71227 -6.13471 -4.20061 1.93323 2.31591 3.18415 3.25957 3.32344 3.34947 3.92315 4.09913 4.23735 4.33799 4.50742 4.80079 4.85134 4.88092 4.90423 5.05068 5.13025 5.22443 5.22577 5.43063 5.49254 5.57406 5.64871 5.77267 5.86653 6.06040 6.19520 6.40023 6.60671 7.20061 7.47145 7.53371 7.59649 7.59969 7.90195 8.04753 8.77915 8.92778 9.34884 9.50067 10.96805 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040106 B = 0.003616 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.987880 B = 7740.714458 C = 8116.484750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.497 6.497 5 C -0.095 4.095 6 H 0.124 0.876 7 C -0.117 4.117 8 C 0.101 3.899 9 N -0.642 5.642 10 C 0.714 3.286 11 O -0.591 6.591 12 N -0.727 5.727 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.167 3.833 23 H 0.091 0.909 24 C -0.161 4.161 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.386 0.614 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.645 -18.028 6.802 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.383 6.383 5 C -0.115 4.115 6 H 0.142 0.858 7 C -0.155 4.155 8 C -0.023 4.023 9 N -0.384 5.384 10 C 0.415 3.585 11 O -0.470 6.470 12 N -0.379 5.379 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.062 3.938 23 H 0.109 0.891 24 C -0.219 4.219 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.218 0.782 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.951 -16.590 7.063 22.798 hybrid contribution 0.656 -0.588 -0.789 1.183 sum -13.295 -17.178 6.273 22.610 Atomic orbital electron populations 1.23289 0.76217 1.03701 1.02719 1.86498 1.23473 1.33238 1.84170 1.23376 0.91514 0.81415 0.72289 1.90707 1.66875 1.36249 1.44513 1.22153 0.87634 0.99187 1.02477 0.85787 1.22804 0.96650 1.00558 0.95466 1.22259 0.96449 0.82921 1.00676 1.47666 1.33018 1.06216 1.51458 1.15623 0.80300 0.82284 0.80245 1.90875 1.70786 1.25983 1.59334 1.45742 1.30354 1.13205 1.48589 1.18992 0.89742 0.81145 0.95515 1.21214 1.13336 0.94496 1.28928 0.91993 1.24945 0.97821 0.94747 0.96511 1.69983 1.38211 1.00269 1.43797 0.86412 0.81314 0.78316 0.80830 1.20496 1.21024 1.19772 1.21099 0.88652 0.92563 0.91475 0.89108 1.22158 1.01038 1.03934 0.94807 0.91788 0.88029 0.91829 0.88484 0.90056 0.90130 0.91174 0.78165 0.95724 0.95684 0.92464 0.92551 0.90112 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.34 10.57 -39.25 -0.41 -3.75 16 3 C 0.47 5.35 7.26 36.01 0.26 5.61 16 4 O -0.50 -7.24 15.18 -18.75 -0.28 -7.52 16 5 C -0.09 -0.97 2.97 -89.94 -0.27 -1.24 16 6 H 0.12 0.98 7.85 -51.93 -0.41 0.57 16 7 C -0.12 -1.02 6.54 -24.47 -0.16 -1.18 16 8 C 0.10 1.13 6.58 -2.41 -0.02 1.11 16 9 N -0.64 -10.37 3.07 -168.56 -0.52 -10.88 16 10 C 0.71 15.40 8.28 -86.92 -0.72 14.68 16 11 O -0.59 -15.24 15.39 5.29 0.08 -15.16 16 12 N -0.73 -16.00 5.51 -66.42 -0.37 -16.36 16 13 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 14 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.17 2.41 2.88 -66.95 -0.19 2.22 16 23 H 0.09 1.55 6.83 -51.93 -0.35 1.20 16 24 C -0.16 -2.27 9.09 37.16 0.34 -1.93 16 25 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 30 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.39 7.28 6.80 -40.82 -0.28 7.01 16 33 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.41 6.90 -51.93 -0.36 1.05 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -34.85 321.07 -6.61 -41.47 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.53 Total: 2.75 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -0.13 Total: 14.32 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.15 Total: -52.86 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.62 Total: -26.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.85 -6.61 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426455822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.243 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds