Wall clock time and date at job start Mon Mar 30 2020 02:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.64254 * 300.69392 * 5 3 2 7 7 C 1.55155 * 110.72295 * 63.83875 * 5 3 2 8 8 C 1.55125 * 101.48552 * 153.73244 * 7 5 3 9 9 N 1.47423 * 104.94256 * 323.22030 * 8 7 5 10 10 C 1.34776 * 125.64814 * 204.03708 * 9 8 7 11 11 O 1.21590 * 120.00066 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00289 * 359.96196 * 10 9 8 13 13 C 1.46500 * 120.00278 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46973 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00102 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99767 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00118 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46699 * 90.00226 * 18 16 14 20 20 H 1.48492 * 109.47428 * 209.99726 * 18 16 14 21 21 H 1.48495 * 109.47500 * 330.00368 * 18 16 14 22 22 C 1.47022 * 108.70259 * 24.00794 * 9 8 7 23 23 H 1.09005 * 110.00788 * 239.44776 * 22 9 8 24 24 C 1.53000 * 109.88461 * 118.35721 * 22 9 8 25 25 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 26 26 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 28 28 H 1.08999 * 111.00521 * 271.94163 * 7 5 3 29 29 H 1.09000 * 111.00540 * 35.79137 * 7 5 3 30 30 H 1.08997 * 110.41726 * 204.29565 * 8 7 5 31 31 H 1.08995 * 110.20682 * 82.04682 * 8 7 5 32 32 H 0.97003 * 119.99822 * 359.97438 * 12 10 9 33 33 H 1.08995 * 109.46977 * 299.99726 * 13 12 10 34 34 H 1.08993 * 109.47091 * 59.99929 * 13 12 10 35 35 H 0.97004 * 119.99786 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.46938 * 302.19012 * 24 22 9 37 37 H 1.08993 * 109.47315 * 62.18730 * 24 22 9 38 38 H 1.08997 * 109.47099 * 182.19041 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9776 0.7748 0.8762 7 6 4.1475 0.6649 -1.3034 8 6 5.4939 1.4255 -1.4268 9 7 5.2033 2.7916 -0.9547 10 6 5.8930 3.9008 -1.2869 11 8 5.5620 4.9804 -0.8360 12 7 6.9499 3.8133 -2.1187 13 6 7.7000 5.0190 -2.4793 14 6 8.8232 4.6509 -3.4141 15 1 8.9645 3.6217 -3.7096 16 6 9.6706 5.6279 -3.8921 17 7 9.4982 6.8812 -3.5326 18 14 11.0634 5.1716 -5.0502 19 1 10.5852 5.2488 -6.4540 20 1 12.1944 6.1147 -4.8601 21 1 11.5176 3.7884 -4.7575 22 6 4.0361 2.7436 -0.0620 23 1 3.2379 3.3718 -0.4576 24 6 4.4304 3.2227 1.3365 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.3099 -0.4074 -1.1943 29 1 3.5015 0.8758 -2.1557 30 1 5.8256 1.4455 -2.4649 31 1 6.2494 0.9584 -0.7952 32 1 7.2143 2.9520 -2.4780 33 1 7.0343 5.7269 -2.9730 34 1 8.1110 5.4742 -1.5784 35 1 10.0941 7.5686 -3.8691 36 1 5.2408 2.6017 1.7182 37 1 4.7609 4.2601 1.2853 38 1 3.5706 3.1477 2.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426455822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:41 Heat of formation + Delta-G solvation = -140.018995 kcal Electronic energy + Delta-G solvation = -20966.292775 eV Core-core repulsion = 17614.946932 eV Total energy + Delta-G solvation = -3351.345843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03119 -40.98092 -38.77413 -37.47057 -36.16031 -34.48971 -32.97743 -32.31767 -29.43776 -28.69741 -27.17181 -25.14079 -23.54559 -23.52591 -21.46499 -20.68811 -19.63423 -18.65189 -18.06940 -17.83210 -17.25976 -17.19674 -16.64321 -16.34604 -15.64031 -15.12012 -14.93992 -14.57277 -14.41977 -14.36665 -14.01381 -13.90952 -13.76629 -13.32684 -13.05443 -12.91190 -12.80645 -12.70295 -12.59147 -12.21335 -12.05090 -11.87365 -11.79453 -11.49567 -11.45628 -11.16403 -10.79584 -10.06015 -9.42657 -8.27453 -6.44376 1.07014 1.38279 1.45620 1.47700 1.59053 1.91037 2.21147 2.39919 3.07564 3.09684 3.34646 3.42009 3.73893 4.06375 4.16552 4.21218 4.32024 4.33870 4.34908 4.53953 4.66146 4.70314 4.74029 4.93500 4.98661 5.04961 5.12145 5.20898 5.26679 5.30090 5.41622 5.51426 5.71876 5.85158 6.19284 6.64485 6.67357 7.18610 7.25928 7.70090 8.85127 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040106 B = 0.003616 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.987880 B = 7740.714458 C = 8116.484750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.476 3.524 4 O -0.539 6.539 5 C -0.082 4.082 6 H 0.161 0.839 7 C -0.102 4.102 8 C 0.089 3.911 9 N -0.636 5.636 10 C 0.708 3.292 11 O -0.645 6.645 12 N -0.719 5.719 13 C 0.287 3.713 14 C -0.553 4.553 15 H 0.085 0.915 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.988 3.012 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.253 1.253 22 C 0.158 3.842 23 H 0.055 0.945 24 C -0.155 4.155 25 H 0.057 0.943 26 H 0.137 0.863 27 H 0.061 0.939 28 H 0.143 0.857 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.404 0.596 33 H -0.018 1.018 34 H -0.015 1.015 35 H 0.269 0.731 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.076 -22.322 6.321 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.320 3.680 4 O -0.428 6.428 5 C -0.102 4.102 6 H 0.178 0.822 7 C -0.140 4.140 8 C -0.033 4.033 9 N -0.375 5.375 10 C 0.410 3.590 11 O -0.527 6.527 12 N -0.373 5.373 13 C 0.163 3.837 14 C -0.591 4.591 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.811 3.189 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.176 1.176 22 C 0.054 3.946 23 H 0.073 0.927 24 C -0.213 4.213 25 H 0.076 0.924 26 H 0.155 0.845 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.240 0.760 33 H 0.000 1.000 34 H 0.003 0.997 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.418 -21.007 6.587 25.782 hybrid contribution 0.338 0.720 -0.581 0.986 sum -13.079 -20.286 6.006 24.873 Atomic orbital electron populations 1.23585 0.74747 1.05908 1.02389 1.86486 1.24837 1.31715 1.83482 1.23538 0.91860 0.81394 0.71185 1.90711 1.67798 1.37749 1.46569 1.22098 0.87151 0.95916 1.04994 0.82175 1.22857 0.94452 1.02544 0.94142 1.22715 0.98908 0.80137 1.01502 1.47578 1.32270 1.06797 1.50866 1.15789 0.80345 0.83062 0.79826 1.90835 1.72091 1.28811 1.60968 1.45291 1.30444 1.12456 1.49121 1.18409 0.89468 0.82243 0.93531 1.21583 1.13098 0.95720 1.28719 0.89663 1.26102 1.00913 0.94385 0.98283 1.70157 1.39691 1.01840 1.45401 0.85111 0.76991 0.78780 0.78038 1.19646 1.21023 1.17617 1.21187 0.87025 0.95534 0.90855 0.92691 1.22076 1.02401 1.01546 0.95269 0.92392 0.84516 0.92035 0.83946 0.90719 0.89615 0.88360 0.76015 1.00004 0.99677 0.92248 0.90512 0.94520 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.46 10.57 -51.38 -0.54 -6.00 16 3 C 0.48 9.87 7.26 71.24 0.52 10.39 16 4 O -0.54 -15.67 15.18 21.96 0.33 -15.33 16 5 C -0.08 -1.44 2.97 -10.35 -0.03 -1.47 16 6 H 0.16 1.73 7.85 -2.39 -0.02 1.71 16 7 C -0.10 -1.37 6.54 32.06 0.21 -1.16 16 8 C 0.09 1.72 6.58 86.93 0.57 2.29 16 9 N -0.64 -20.30 3.07 -805.45 -2.47 -22.77 16 10 C 0.71 31.73 8.28 179.05 1.48 33.22 16 11 O -0.64 -35.63 15.39 -4.00 -0.06 -35.69 16 12 N -0.72 -32.41 5.51 -482.31 -2.66 -35.06 16 13 C 0.29 16.37 5.43 85.63 0.46 16.83 16 14 C -0.55 -30.52 9.28 25.60 0.24 -30.28 16 15 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 18 Si 0.99 42.42 29.54 68.60 2.03 44.44 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 22 C 0.16 4.54 2.88 45.34 0.13 4.67 16 23 H 0.05 1.99 6.83 -2.38 -0.02 1.97 16 24 C -0.15 -4.37 9.09 71.98 0.65 -3.72 16 25 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 26 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 28 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.15 8.04 -2.39 -0.02 1.13 16 30 H 0.09 1.61 7.30 -2.39 -0.02 1.59 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.40 14.91 6.80 -92.71 -0.63 14.28 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 1.35 6.90 -2.39 -0.02 1.34 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -82.44 321.07 3.25 -79.19 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.43 Total: 15.24 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 5.90 Total: 32.87 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.84 Total: -114.72 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -0.27 Total: -57.03 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -82.44 3.25 -79.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426455822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.827 kcal (2) G-P(sol) polarization free energy of solvation -82.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds