Wall clock time and date at job start Mon Mar 30 2020 02:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34236 * 117.00077 * 2 1 4 4 O 1.20824 * 119.99471 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99870 * 179.97438 * 3 2 1 6 6 H 1.08994 * 110.64401 * 326.93550 * 5 3 2 7 7 C 1.55163 * 110.71704 * 203.79169 * 5 3 2 8 8 C 1.54913 * 101.58148 * 205.96085 * 7 5 3 9 9 N 1.47419 * 104.83131 * 37.00859 * 8 7 5 10 10 C 1.34774 * 125.64869 * 155.84782 * 9 8 7 11 11 O 1.21584 * 120.00526 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99994 * 0.02562 * 10 9 8 13 13 C 1.46502 * 120.00083 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46823 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99670 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00110 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99772 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47619 * 59.99328 * 18 16 14 20 20 H 1.48498 * 109.47021 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46970 * 299.99393 * 18 16 14 22 22 C 1.47489 * 108.76278 * 335.89586 * 9 8 7 23 23 H 1.09004 * 110.03297 * 241.66469 * 22 9 8 24 24 C 1.52996 * 109.96544 * 120.34851 * 22 9 8 25 25 H 1.08996 * 109.47890 * 300.00154 * 1 2 3 26 26 H 1.09002 * 109.46768 * 60.00251 * 1 2 3 27 27 H 1.09000 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.08999 * 111.00639 * 324.03580 * 7 5 3 29 29 H 1.09003 * 111.00121 * 87.88810 * 7 5 3 30 30 H 1.08992 * 110.36854 * 155.85132 * 8 7 5 31 31 H 1.09000 * 110.36324 * 278.06602 * 8 7 5 32 32 H 0.96998 * 119.99997 * 0.02562 * 12 10 9 33 33 H 1.09001 * 109.46816 * 299.99781 * 13 12 10 34 34 H 1.08994 * 109.46964 * 60.00489 * 13 12 10 35 35 H 0.97000 * 120.00053 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47085 * 298.29152 * 24 22 9 37 37 H 1.08993 * 109.47452 * 58.29586 * 24 22 9 38 38 H 1.09001 * 109.47053 * 178.29631 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9945 0.4415 0.5574 7 6 4.0447 2.6298 0.5860 8 6 5.4245 2.7946 -0.0988 9 7 5.2370 2.2587 -1.4592 10 6 5.9715 2.5864 -2.5407 11 8 5.7263 2.0799 -3.6185 12 7 6.9781 3.4755 -2.4274 13 6 7.7762 3.8322 -3.6031 14 6 8.8286 4.8366 -3.2098 15 1 8.8959 5.1758 -2.1867 16 6 9.7048 5.3235 -4.1566 17 7 9.6225 4.9109 -5.4026 18 14 11.0088 6.5691 -3.6694 19 1 11.8927 5.9802 -2.6315 20 1 11.8179 6.9305 -4.8610 21 1 10.3528 7.7865 -3.1281 22 6 4.1119 1.3052 -1.4426 23 1 4.4596 0.3124 -1.7283 24 6 3.0168 1.7726 -2.4034 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.3696 3.4376 0.3037 29 1 4.1506 2.5718 1.6693 30 1 5.7039 3.8473 -0.1408 31 1 6.1835 2.2224 0.4348 32 1 7.1741 3.8793 -1.5676 33 1 8.2577 2.9385 -4.0000 34 1 7.1276 4.2644 -4.3650 35 1 10.2392 5.2531 -6.0686 36 1 2.6379 2.7416 -2.0785 37 1 3.4290 1.8619 -3.4084 38 1 2.2032 1.0472 -2.4075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426455830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:51 Heat of formation + Delta-G solvation = -137.835651 kcal Electronic energy + Delta-G solvation = -21095.676258 eV Core-core repulsion = 17744.425092 eV Total energy + Delta-G solvation = -3351.251166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12099 -40.94779 -38.78165 -37.38706 -36.15575 -34.50423 -32.98006 -32.23968 -29.42740 -28.71949 -27.18900 -25.25161 -23.70866 -23.61489 -21.15469 -20.73380 -19.51524 -18.62120 -18.08082 -17.71643 -17.42668 -17.10534 -16.75063 -16.44434 -15.83016 -15.15998 -14.83111 -14.67582 -14.44241 -14.08424 -14.04990 -13.85458 -13.65791 -13.33444 -13.19894 -12.95550 -12.88779 -12.67495 -12.62950 -12.21575 -12.05006 -11.84515 -11.77465 -11.49219 -11.48803 -11.14650 -10.78192 -10.05885 -9.44929 -8.27332 -6.44102 1.02963 1.43414 1.48967 1.49830 1.57472 1.88213 2.21182 2.39794 3.07558 3.16153 3.32520 3.43215 3.73630 3.99539 4.11466 4.20760 4.27362 4.31752 4.35089 4.41107 4.61533 4.67655 4.73386 4.83427 4.89107 5.05733 5.10873 5.17442 5.27457 5.35240 5.37135 5.50647 5.71315 5.85419 6.17911 6.67171 6.67831 7.17581 7.25988 7.69481 8.84914 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.046488 B = 0.003613 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.164449 B = 7747.359526 C = 8093.677855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.481 3.519 4 O -0.527 6.527 5 C -0.086 4.086 6 H 0.154 0.846 7 C -0.107 4.107 8 C 0.093 3.907 9 N -0.636 5.636 10 C 0.710 3.290 11 O -0.642 6.642 12 N -0.720 5.720 13 C 0.287 3.713 14 C -0.555 4.555 15 H 0.084 0.916 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.286 1.286 21 H -0.262 1.262 22 C 0.167 3.833 23 H 0.087 0.913 24 C -0.165 4.165 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.403 0.597 33 H -0.013 1.013 34 H -0.017 1.017 35 H 0.269 0.731 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.403 -8.493 18.284 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.324 3.676 4 O -0.416 6.416 5 C -0.105 4.105 6 H 0.172 0.828 7 C -0.145 4.145 8 C -0.029 4.029 9 N -0.375 5.375 10 C 0.411 3.589 11 O -0.524 6.524 12 N -0.374 5.374 13 C 0.164 3.836 14 C -0.593 4.593 15 H 0.102 0.898 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.187 1.187 22 C 0.063 3.937 23 H 0.105 0.895 24 C -0.223 4.223 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.148 0.852 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.239 0.761 33 H 0.005 0.995 34 H 0.001 0.999 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.668 -8.521 17.249 24.193 hybrid contribution 0.371 0.794 -0.394 0.961 sum -14.297 -7.727 16.854 23.414 Atomic orbital electron populations 1.23563 0.74768 1.05747 1.02544 1.86520 1.24973 1.32567 1.83547 1.23365 0.91704 0.81366 0.71118 1.90671 1.67534 1.37230 1.46133 1.22195 0.87392 1.03887 0.97042 0.82795 1.22834 0.94850 0.94290 1.02480 1.22620 0.98796 1.00642 0.80793 1.47689 1.34178 1.47186 1.08458 1.15764 0.79907 0.80179 0.83014 1.90827 1.73532 1.59857 1.28177 1.45321 1.33389 1.44763 1.13958 1.18406 0.88564 0.93745 0.82876 1.21559 1.15568 1.25247 0.96954 0.89814 1.26073 1.00171 0.98883 0.94421 1.70139 1.38778 1.44820 1.03240 0.85186 0.77741 0.78381 0.77766 1.18475 1.21130 1.18696 1.21274 0.85710 0.93136 0.93613 0.89460 1.22211 0.98153 1.01476 1.00508 0.91426 0.92467 0.85067 0.90568 0.85191 0.89935 0.88278 0.76107 0.99530 0.99895 0.92225 0.92778 0.93271 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.29 10.57 -51.47 -0.54 -6.84 16 3 C 0.48 9.76 5.10 71.24 0.36 10.12 16 4 O -0.53 -13.55 14.74 21.97 0.32 -13.22 16 5 C -0.09 -1.49 3.37 -10.35 -0.03 -1.52 16 6 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 7 C -0.11 -1.70 6.39 31.99 0.20 -1.50 16 8 C 0.09 1.88 6.58 86.86 0.57 2.45 16 9 N -0.64 -19.74 3.09 -804.80 -2.49 -22.23 16 10 C 0.71 30.97 8.28 179.05 1.48 32.45 16 11 O -0.64 -34.10 15.21 -3.98 -0.06 -34.16 16 12 N -0.72 -32.18 5.51 -482.29 -2.66 -34.84 16 13 C 0.29 16.25 5.43 85.63 0.46 16.72 16 14 C -0.56 -30.59 9.28 25.60 0.24 -30.36 16 15 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 18 Si 0.99 42.43 29.54 68.60 2.03 44.45 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 C 0.17 4.38 3.45 45.25 0.16 4.54 16 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.17 -4.99 8.11 71.98 0.58 -4.41 16 25 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 26 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 27 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.56 7.23 -2.39 -0.02 1.54 16 29 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.67 7.30 -2.39 -0.02 1.65 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.40 14.94 6.80 -92.71 -0.63 14.30 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 37 H 0.05 1.85 6.67 -2.39 -0.02 1.83 16 38 H 0.07 1.88 7.25 -2.39 -0.02 1.86 16 Total: -1.00 -78.55 317.10 3.01 -75.55 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.44 Total: 17.09 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 5.69 Total: 30.71 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -4.86 Total: -113.59 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.28 Total: -54.22 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -78.55 3.01 -75.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426455830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.290 kcal (2) G-P(sol) polarization free energy of solvation -78.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds