Wall clock time and date at job start Mon Mar 30 2020 01:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46813 * 2 1 4 4 C 1.50705 * 109.46896 * 240.00177 * 2 1 3 5 5 O 1.21282 * 119.99511 * 264.99840 * 4 2 1 6 6 N 1.34773 * 119.99968 * 85.00072 * 4 2 1 7 7 C 1.46494 * 119.99816 * 179.97438 * 6 4 2 8 8 C 1.50705 * 109.47364 * 180.02562 * 7 6 4 9 9 O 1.21304 * 119.99491 * 359.97438 * 8 7 6 10 10 N 1.34765 * 120.00328 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00331 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99884 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00286 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99778 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47381 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46998 * 119.99958 * 15 13 11 18 18 H 1.48494 * 109.47347 * 239.99595 * 15 13 11 19 19 C 1.52994 * 109.46785 * 120.00108 * 2 1 3 20 20 C 1.53782 * 113.61734 * 299.99807 * 19 2 1 21 21 C 1.53781 * 87.08260 * 220.02231 * 20 19 2 22 22 C 1.53786 * 87.17350 * 25.39213 * 21 20 19 23 23 H 1.08994 * 109.47196 * 300.00079 * 1 2 3 24 24 H 1.09006 * 109.47251 * 60.00068 * 1 2 3 25 25 H 1.09006 * 109.47175 * 180.02562 * 1 2 3 26 26 H 0.96695 * 113.99336 * 179.97438 * 3 2 1 27 27 H 0.97006 * 119.99774 * 359.97438 * 6 4 2 28 28 H 1.08997 * 109.47417 * 299.99685 * 7 6 4 29 29 H 1.09004 * 109.47383 * 60.00236 * 7 6 4 30 30 H 0.96999 * 120.00361 * 0.02562 * 10 8 7 31 31 H 0.96997 * 120.00103 * 179.97438 * 14 13 11 32 32 H 1.08997 * 112.90864 * 71.25652 * 19 2 1 33 33 H 1.09001 * 113.61250 * 105.47049 * 20 19 2 34 34 H 1.08997 * 113.61225 * 334.56890 * 20 19 2 35 35 H 1.09002 * 113.61445 * 139.98212 * 21 20 19 36 36 H 1.09002 * 113.61408 * 270.79943 * 21 20 19 37 37 H 1.08993 * 113.61491 * 89.15923 * 22 21 20 38 38 H 1.09000 * 113.61138 * 220.06261 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3208 -1.8872 -1.1760 6 7 2.1610 -0.0380 -2.3914 7 6 2.6498 -0.7285 -3.5874 8 6 2.7011 0.2400 -4.7410 9 8 2.3620 1.3935 -4.5799 10 7 3.1225 -0.1757 -5.9517 11 6 3.1696 0.7054 -7.0010 12 1 2.8685 1.7327 -6.8574 13 6 3.6036 0.2767 -8.2494 14 7 3.9694 -0.9732 -8.4243 15 14 3.6670 1.4772 -9.6791 16 1 3.2069 2.8138 -9.2240 17 1 5.0616 1.5782 -10.1792 18 1 2.7836 0.9942 -10.7706 19 6 2.0400 -0.7213 1.2492 20 6 1.5811 -0.0723 2.5657 21 6 2.9922 -0.3573 3.1066 22 6 3.4748 -0.3292 1.6467 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.9703 1.4236 0.0004 27 1 1.9300 0.9031 -2.4350 28 1 3.6492 -1.1202 -3.3980 29 1 1.9776 -1.5508 -3.8326 30 1 3.3925 -1.0984 -6.0808 31 1 4.2720 -1.2726 -9.2958 32 1 1.8772 -1.7984 1.2134 33 1 0.7965 -0.6300 3.0772 34 1 1.3553 0.9900 2.4734 35 1 3.3975 0.4503 3.7161 36 1 3.0893 -1.3344 3.5799 37 1 3.7676 0.6627 1.3027 38 1 4.2168 -1.0940 1.4174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488461935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:16 Heat of formation + Delta-G solvation = -111.139762 kcal Electronic energy + Delta-G solvation = -20916.243567 eV Core-core repulsion = 17566.150022 eV Total energy + Delta-G solvation = -3350.093545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71590 -38.80964 -37.91374 -36.06656 -34.44229 -33.62930 -31.56400 -31.36935 -27.83588 -26.31207 -25.46429 -24.68610 -22.80373 -20.18516 -19.63729 -19.36961 -18.33724 -17.91645 -16.89700 -15.89321 -15.63631 -15.41331 -15.10593 -14.67453 -14.40546 -14.19831 -13.68474 -13.45208 -13.21675 -12.70387 -12.55795 -12.39520 -12.24341 -12.07589 -11.90484 -11.76469 -11.64609 -11.43427 -11.15326 -10.73239 -10.50951 -10.41697 -10.33494 -10.21514 -9.66037 -9.34596 -8.83118 -8.64203 -8.11607 -6.52959 -3.94948 2.68133 3.09380 3.20066 3.23744 3.30691 3.72236 4.00899 4.10103 4.32108 4.41077 4.54314 4.64711 4.84792 4.93032 5.02655 5.15250 5.20470 5.46817 5.55952 5.58317 5.63694 5.70124 5.73294 5.80798 5.85708 5.91929 6.00123 6.04931 6.06145 6.33166 6.64696 7.29576 7.45037 7.80784 7.90787 8.37730 8.44270 9.03411 9.37702 9.85625 10.64026 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044915 B = 0.003448 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.248703 B = 8117.967419 C = 8256.969599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.130 3.870 3 O -0.546 6.546 4 C 0.487 3.513 5 O -0.545 6.545 6 N -0.697 5.697 7 C 0.106 3.894 8 C 0.427 3.573 9 O -0.595 6.595 10 N -0.549 5.549 11 C -0.305 4.305 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.895 5.895 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.143 4.143 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.379 0.621 27 H 0.416 0.584 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.396 0.604 31 H 0.274 0.726 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 -0.257 18.306 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.086 3.914 3 O -0.353 6.353 4 C 0.271 3.729 5 O -0.423 6.423 6 N -0.352 5.352 7 C -0.022 4.022 8 C 0.213 3.787 9 O -0.481 6.481 10 N -0.184 5.184 11 C -0.434 4.434 12 H 0.124 0.876 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.142 4.142 20 C -0.167 4.167 21 C -0.176 4.176 22 C -0.180 4.180 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.229 0.771 27 H 0.256 0.744 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.540 -0.283 18.226 18.568 hybrid contribution 0.805 0.127 -1.057 1.335 sum -2.734 -0.156 17.168 17.385 Atomic orbital electron populations 1.21704 0.90462 1.03174 1.03910 1.21268 0.96467 0.82284 0.91341 1.86590 1.27394 1.24641 1.96717 1.21338 0.78511 0.87761 0.85303 1.90679 1.50228 1.15966 1.85422 1.45763 1.65297 1.15673 1.08458 1.20989 1.00731 0.95269 0.85171 1.19742 0.85551 0.89001 0.84414 1.90515 1.54861 1.19231 1.83513 1.41802 1.56002 1.13061 1.07552 1.19791 1.41756 0.94550 0.87313 0.87598 1.25328 0.96552 0.96800 0.99053 1.69619 1.43433 1.15285 1.25167 0.85754 0.77929 0.80182 0.80215 1.19098 1.20606 1.20602 1.23124 0.96778 1.01330 0.92967 1.22922 0.96866 1.01579 0.95367 1.22739 0.96879 1.01852 0.96127 1.22993 0.96489 1.01784 0.96740 0.90573 0.91136 0.90551 0.77095 0.74448 0.89897 0.89865 0.77070 0.91633 0.87303 0.91481 0.89273 0.91418 0.90248 0.90046 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.63 37.16 0.32 -1.15 16 2 C 0.13 1.57 0.90 -91.77 -0.08 1.49 16 3 O -0.55 -6.34 11.56 -35.23 -0.41 -6.75 16 4 C 0.49 7.57 6.68 -10.98 -0.07 7.49 16 5 O -0.54 -9.89 15.95 5.56 0.09 -9.80 16 6 N -0.70 -11.74 5.44 -61.47 -0.33 -12.08 16 7 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 8 C 0.43 9.84 7.85 -10.99 -0.09 9.76 16 9 O -0.59 -15.35 15.24 5.54 0.08 -15.26 16 10 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 11 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 12 H 0.11 3.01 7.16 -52.48 -0.38 2.64 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 14 N -0.89 -23.88 13.05 55.50 0.72 -23.16 16 15 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 C -0.12 -1.30 2.74 -89.71 -0.25 -1.55 16 20 C -0.13 -1.12 6.58 -25.92 -0.17 -1.29 16 21 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 22 C -0.14 -1.37 7.41 -25.82 -0.19 -1.56 16 23 H 0.08 0.71 7.45 -51.93 -0.39 0.32 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.38 3.68 6.81 45.56 0.31 3.99 16 27 H 0.42 7.19 6.87 -40.82 -0.28 6.91 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.11 1.29 7.62 -51.93 -0.40 0.89 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.79 7.77 -51.93 -0.40 0.38 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.71 5.91 -51.93 -0.31 0.40 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -30.79 318.54 -5.81 -36.61 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -4.68 Total: 17.91 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.01 Total: 5.92 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.33 Total: -48.93 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.23 Total: -31.81 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.79 -5.81 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488461935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.532 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds