Wall clock time and date at job start Mon Mar 30 2020 01:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46813 * 2 1 4 4 C 1.50705 * 109.46896 * 240.00177 * 2 1 3 5 5 O 1.21282 * 119.99511 * 264.99840 * 4 2 1 6 6 N 1.34773 * 119.99968 * 85.00072 * 4 2 1 7 7 C 1.46494 * 119.99816 * 179.97438 * 6 4 2 8 8 C 1.50705 * 109.47364 * 180.02562 * 7 6 4 9 9 O 1.21304 * 119.99491 * 359.97438 * 8 7 6 10 10 N 1.34765 * 120.00328 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00331 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99884 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00286 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99778 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47381 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46998 * 119.99958 * 15 13 11 18 18 H 1.48494 * 109.47347 * 239.99595 * 15 13 11 19 19 C 1.52994 * 109.46785 * 120.00108 * 2 1 3 20 20 C 1.53782 * 113.61734 * 299.99807 * 19 2 1 21 21 C 1.53781 * 87.08260 * 220.02231 * 20 19 2 22 22 C 1.53786 * 87.17350 * 25.39213 * 21 20 19 23 23 H 1.08994 * 109.47196 * 300.00079 * 1 2 3 24 24 H 1.09006 * 109.47251 * 60.00068 * 1 2 3 25 25 H 1.09006 * 109.47175 * 180.02562 * 1 2 3 26 26 H 0.96695 * 113.99336 * 179.97438 * 3 2 1 27 27 H 0.97006 * 119.99774 * 359.97438 * 6 4 2 28 28 H 1.08997 * 109.47417 * 299.99685 * 7 6 4 29 29 H 1.09004 * 109.47383 * 60.00236 * 7 6 4 30 30 H 0.96999 * 120.00361 * 0.02562 * 10 8 7 31 31 H 0.96997 * 120.00103 * 179.97438 * 14 13 11 32 32 H 1.08997 * 112.90864 * 71.25652 * 19 2 1 33 33 H 1.09001 * 113.61250 * 105.47049 * 20 19 2 34 34 H 1.08997 * 113.61225 * 334.56890 * 20 19 2 35 35 H 1.09002 * 113.61445 * 139.98212 * 21 20 19 36 36 H 1.09002 * 113.61408 * 270.79943 * 21 20 19 37 37 H 1.08993 * 113.61491 * 89.15923 * 22 21 20 38 38 H 1.09000 * 113.61138 * 220.06261 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3208 -1.8872 -1.1760 6 7 2.1610 -0.0380 -2.3914 7 6 2.6498 -0.7285 -3.5874 8 6 2.7011 0.2400 -4.7410 9 8 2.3620 1.3935 -4.5799 10 7 3.1225 -0.1757 -5.9517 11 6 3.1696 0.7054 -7.0010 12 1 2.8685 1.7327 -6.8574 13 6 3.6036 0.2767 -8.2494 14 7 3.9694 -0.9732 -8.4243 15 14 3.6670 1.4772 -9.6791 16 1 3.2069 2.8138 -9.2240 17 1 5.0616 1.5782 -10.1792 18 1 2.7836 0.9942 -10.7706 19 6 2.0400 -0.7213 1.2492 20 6 1.5811 -0.0723 2.5657 21 6 2.9922 -0.3573 3.1066 22 6 3.4748 -0.3292 1.6467 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.9703 1.4236 0.0004 27 1 1.9300 0.9031 -2.4350 28 1 3.6492 -1.1202 -3.3980 29 1 1.9776 -1.5508 -3.8326 30 1 3.3925 -1.0984 -6.0808 31 1 4.2720 -1.2726 -9.2958 32 1 1.8772 -1.7984 1.2134 33 1 0.7965 -0.6300 3.0772 34 1 1.3553 0.9900 2.4734 35 1 3.3975 0.4503 3.7161 36 1 3.0893 -1.3344 3.5799 37 1 3.7676 0.6627 1.3027 38 1 4.2168 -1.0940 1.4174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488461935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:16 Heat of formation + Delta-G solvation = -135.003290 kcal Electronic energy + Delta-G solvation = -20917.278367 eV Core-core repulsion = 17566.150022 eV Total energy + Delta-G solvation = -3351.128346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.79228 -40.36127 -39.30305 -36.99541 -36.25693 -35.23767 -33.39778 -32.47445 -29.42588 -27.16275 -26.52973 -26.18308 -23.90654 -21.40893 -21.33458 -20.20106 -20.12111 -19.30853 -17.90457 -17.51978 -16.94074 -16.73979 -16.57518 -16.08812 -15.87613 -15.76007 -15.16255 -14.67611 -14.26434 -13.99459 -13.59778 -13.56800 -13.47872 -13.34812 -13.22004 -12.99063 -12.92516 -12.60591 -12.46501 -12.25781 -12.11930 -11.59834 -11.49394 -11.28276 -11.02215 -10.62083 -10.46713 -10.25272 -10.10620 -8.53058 -6.03406 1.33609 1.42135 1.43163 1.56188 1.88153 1.93724 2.29682 3.06654 3.11941 3.13978 3.42906 3.61819 3.68347 3.87527 4.00374 4.18417 4.22977 4.31332 4.37494 4.39039 4.72181 4.76127 4.82919 4.88712 4.95148 5.06585 5.12493 5.15763 5.22850 5.32731 5.36949 5.61323 5.89623 6.30095 6.45962 6.59970 7.01551 7.07380 7.41604 7.92028 8.64075 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044915 B = 0.003448 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.248703 B = 8117.967419 C = 8256.969599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.138 3.862 3 O -0.548 6.548 4 C 0.487 3.513 5 O -0.571 6.571 6 N -0.700 5.700 7 C 0.118 3.882 8 C 0.431 3.569 9 O -0.623 6.623 10 N -0.559 5.559 11 C -0.338 4.338 12 H 0.086 0.914 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 0.997 3.003 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.271 1.271 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.149 4.149 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.387 0.613 27 H 0.415 0.585 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.399 0.601 31 H 0.280 0.720 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 0.108 19.223 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.094 3.906 3 O -0.356 6.356 4 C 0.273 3.727 5 O -0.450 6.450 6 N -0.354 5.354 7 C -0.010 4.010 8 C 0.219 3.781 9 O -0.511 6.511 10 N -0.194 5.194 11 C -0.467 4.467 12 H 0.104 0.896 13 C -0.211 4.211 14 N -0.556 5.556 15 Si 0.820 3.180 16 H -0.194 1.194 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.169 4.169 22 C -0.186 4.186 23 H 0.115 0.885 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.238 0.762 27 H 0.254 0.746 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.233 0.767 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.696 0.066 19.164 19.517 hybrid contribution 0.860 -0.008 -1.302 1.560 sum -2.836 0.058 17.862 18.086 Atomic orbital electron populations 1.21759 0.89464 1.03649 1.04465 1.21281 0.97120 0.82252 0.89936 1.86589 1.28283 1.24196 1.96568 1.22072 0.77408 0.87516 0.85657 1.90665 1.51283 1.17253 1.85829 1.45811 1.65634 1.15578 1.08391 1.20814 1.01807 0.94179 0.84154 1.20420 0.83671 0.89214 0.84844 1.90490 1.55623 1.20848 1.84135 1.41846 1.56721 1.12965 1.07875 1.19781 1.43750 0.94326 0.88831 0.89611 1.26131 0.95523 0.98490 1.00925 1.69680 1.43364 1.16446 1.26104 0.84808 0.78362 0.77786 0.77011 1.19435 1.19566 1.19601 1.23130 0.97853 1.00536 0.93141 1.22886 0.97517 1.01567 0.93761 1.22724 0.96304 1.02619 0.95225 1.23072 0.95598 1.01837 0.98082 0.88513 0.92088 0.90162 0.76178 0.74578 0.88752 0.88899 0.76724 0.91031 0.88655 0.90303 0.89051 0.90208 0.89773 0.89175 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.63 71.98 0.62 -2.14 16 2 C 0.14 3.16 0.90 -11.54 -0.01 3.15 16 3 O -0.55 -11.91 11.56 -148.98 -1.72 -13.63 16 4 C 0.49 14.84 6.68 87.66 0.59 15.42 16 5 O -0.57 -20.45 15.95 -3.03 -0.05 -20.50 16 6 N -0.70 -23.28 5.44 -466.79 -2.54 -25.82 16 7 C 0.12 4.35 6.15 85.64 0.53 4.88 16 8 C 0.43 20.07 7.85 87.66 0.69 20.76 16 9 O -0.62 -32.59 15.24 -3.10 -0.05 -32.64 16 10 N -0.56 -28.16 5.29 -306.98 -1.62 -29.78 16 11 C -0.34 -18.66 9.68 84.04 0.81 -17.85 16 12 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 13 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 14 N -0.92 -48.60 13.05 21.66 0.28 -48.32 16 15 Si 1.00 41.74 29.55 68.60 2.03 43.77 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 C -0.13 -2.52 2.74 -10.21 -0.03 -2.55 16 20 C -0.12 -1.76 6.58 31.12 0.20 -1.56 16 21 C -0.13 -1.84 8.08 31.12 0.25 -1.59 16 22 C -0.15 -2.65 7.41 31.18 0.23 -2.42 16 23 H 0.10 1.56 7.45 -2.39 -0.02 1.54 16 24 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.39 6.96 6.81 -74.06 -0.50 6.46 16 27 H 0.42 14.24 6.87 -92.70 -0.64 13.60 16 28 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 30 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 31 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.10 2.17 7.62 -2.39 -0.02 2.15 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.34 7.77 -2.39 -0.02 1.33 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.42 5.91 -2.39 -0.01 1.40 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -65.08 318.54 -0.09 -65.16 By element: Atomic # 1 Polarization: 46.46 SS G_CDS: -0.77 Total: 45.69 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 4.35 Total: 16.06 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.88 Total: -103.92 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -1.82 Total: -66.76 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -65.08 -0.09 -65.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488461935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.842 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds