Wall clock time and date at job start Mon Mar 30 2020 01:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47103 * 2 1 4 4 C 1.50701 * 109.46986 * 119.99708 * 2 1 3 5 5 O 1.21284 * 119.99832 * 95.00037 * 4 2 1 6 6 N 1.34771 * 120.00418 * 275.00230 * 4 2 1 7 7 C 1.46500 * 120.00116 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47083 * 179.97438 * 7 6 4 9 9 O 1.21294 * 119.99961 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00057 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00121 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99996 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00114 * 180.02562 * 11 10 8 14 14 N 1.31413 * 119.99846 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99830 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47284 * 60.00187 * 15 13 11 17 17 H 1.48506 * 109.46949 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47331 * 299.99661 * 15 13 11 19 19 C 1.52997 * 109.47155 * 239.99782 * 2 1 3 20 20 C 1.53784 * 113.61270 * 157.49797 * 19 2 1 21 21 C 1.53779 * 87.08045 * 220.02125 * 20 19 2 22 22 C 1.53779 * 87.08402 * 25.43458 * 21 20 19 23 23 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47333 * 300.00168 * 1 2 3 25 25 H 1.09000 * 109.47214 * 60.00017 * 1 2 3 26 26 H 0.96701 * 113.99828 * 179.97438 * 3 2 1 27 27 H 0.96998 * 119.99822 * 359.97438 * 6 4 2 28 28 H 1.09002 * 109.46958 * 299.99333 * 7 6 4 29 29 H 1.08992 * 109.47284 * 59.99844 * 7 6 4 30 30 H 0.97002 * 120.00267 * 359.97438 * 10 8 7 31 31 H 0.97000 * 119.99728 * 179.97438 * 14 13 11 32 32 H 1.08994 * 112.91116 * 288.75167 * 19 2 1 33 33 H 1.09002 * 113.61478 * 334.57090 * 20 19 2 34 34 H 1.09004 * 113.61162 * 105.47268 * 20 19 2 35 35 H 1.09006 * 113.61307 * 270.88660 * 21 20 19 36 36 H 1.09007 * 113.61642 * 139.98417 * 21 20 19 37 37 H 1.08997 * 113.61646 * 220.02209 * 22 21 20 38 38 H 1.08998 * 113.69354 * 89.12517 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3207 -1.8871 1.1761 6 7 2.1610 -0.0381 2.3915 7 6 2.6498 -0.7286 3.5875 8 6 2.7009 0.2399 4.7410 9 8 2.3619 1.3933 4.5799 10 7 3.1224 -0.1758 5.9517 11 6 3.1684 0.7051 7.0013 12 1 2.8673 1.7323 6.8577 13 6 3.6034 0.2766 8.2494 14 7 3.9703 -0.9732 8.4240 15 14 3.6654 1.4767 9.6795 16 1 2.3037 2.0098 9.9378 17 1 4.1606 0.7767 10.8921 18 1 4.5807 2.5974 9.3460 19 6 2.0400 -0.7213 -1.2492 20 6 3.4727 -0.3277 -1.6460 21 6 2.9922 -0.3573 -3.1065 22 6 1.5811 -0.0722 -2.5657 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.9703 1.4237 0.0004 27 1 1.9306 0.9032 2.4349 28 1 1.9775 -1.5508 3.8326 29 1 3.6491 -1.1203 3.3980 30 1 3.3925 -1.0985 6.0809 31 1 4.2743 -1.2722 9.2952 32 1 1.8771 -1.7984 -1.2134 33 1 3.7639 0.6648 -1.3021 34 1 4.2151 -1.0916 -1.4150 35 1 3.0897 -1.3350 -3.5785 36 1 3.3976 0.4504 -3.7160 37 1 0.7966 -0.6299 -3.0772 38 1 1.3539 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488461936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:19 Heat of formation + Delta-G solvation = -110.892625 kcal Electronic energy + Delta-G solvation = -20916.821825 eV Core-core repulsion = 17566.738996 eV Total energy + Delta-G solvation = -3350.082829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72215 -38.81285 -37.91443 -36.06767 -34.44041 -33.62800 -31.56391 -31.36774 -27.83492 -26.31678 -25.45848 -24.68318 -22.80391 -20.18469 -19.63498 -19.36985 -18.33694 -17.91592 -16.89748 -15.89177 -15.63508 -15.41323 -15.10581 -14.66620 -14.40597 -14.20925 -13.68469 -13.44728 -13.21678 -12.70272 -12.55739 -12.39548 -12.23967 -12.07445 -11.90302 -11.76486 -11.64008 -11.43491 -11.11261 -10.73251 -10.51586 -10.50356 -10.32268 -10.21682 -9.63748 -9.34560 -8.83053 -8.64106 -8.11411 -6.52616 -3.94741 2.68179 3.13125 3.19699 3.21561 3.28615 3.72526 4.00900 4.10171 4.32286 4.41415 4.54287 4.64605 4.84948 4.93099 5.02719 5.15393 5.20555 5.46842 5.55919 5.58372 5.63714 5.70167 5.73357 5.80887 5.85835 5.92084 6.00165 6.05090 6.06309 6.33200 6.64770 7.29552 7.44805 7.80850 7.90485 8.37808 8.44527 9.03352 9.37740 9.85822 10.64219 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044930 B = 0.003448 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.042999 B = 8117.680481 C = 8256.834718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.130 3.870 3 O -0.546 6.546 4 C 0.486 3.514 5 O -0.545 6.545 6 N -0.697 5.697 7 C 0.106 3.894 8 C 0.427 3.573 9 O -0.595 6.595 10 N -0.549 5.549 11 C -0.306 4.306 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.895 5.895 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.130 4.130 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.379 0.621 27 H 0.416 0.584 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.396 0.604 31 H 0.275 0.725 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -0.279 -18.266 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.086 3.914 3 O -0.353 6.353 4 C 0.271 3.729 5 O -0.423 6.423 6 N -0.352 5.352 7 C -0.022 4.022 8 C 0.213 3.787 9 O -0.481 6.481 10 N -0.184 5.184 11 C -0.436 4.436 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.142 4.142 20 C -0.180 4.180 21 C -0.176 4.176 22 C -0.167 4.167 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.229 0.771 27 H 0.255 0.745 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.516 -0.315 -18.179 18.518 hybrid contribution 0.797 0.150 1.048 1.325 sum -2.719 -0.165 -17.131 17.346 Atomic orbital electron populations 1.21703 0.90463 1.03175 1.03909 1.21268 0.96468 0.82283 0.91344 1.86591 1.27396 1.24645 1.96716 1.21337 0.78513 0.87764 0.85301 1.90680 1.50230 1.15966 1.85423 1.45762 1.65306 1.15662 1.08459 1.20987 1.00727 0.95269 0.85169 1.19737 0.85585 0.89003 0.84415 1.90511 1.54887 1.19237 1.83513 1.41790 1.55986 1.13056 1.07524 1.19693 1.41957 0.94550 0.87351 0.87703 1.25327 0.96508 0.96799 0.99040 1.69608 1.43247 1.15304 1.25374 0.85866 0.78948 0.79656 0.79468 1.19753 1.20846 1.19749 1.23095 0.96805 1.01331 0.92974 1.22966 0.96514 1.01787 0.96746 1.22740 0.96880 1.01849 0.96122 1.22924 0.96866 1.01585 0.95366 0.90549 0.91137 0.90574 0.77091 0.74452 0.89865 0.89901 0.77062 0.91524 0.87293 0.90036 0.91056 0.90234 0.91404 0.91496 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.63 37.16 0.32 -1.15 16 2 C 0.13 1.58 0.90 -91.77 -0.08 1.49 16 3 O -0.55 -6.35 11.56 -35.23 -0.41 -6.76 16 4 C 0.49 7.57 6.68 -10.99 -0.07 7.50 16 5 O -0.54 -9.89 15.95 5.55 0.09 -9.80 16 6 N -0.70 -11.75 5.44 -61.47 -0.33 -12.09 16 7 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 8 C 0.43 9.84 7.85 -10.99 -0.09 9.76 16 9 O -0.60 -15.36 15.24 5.54 0.08 -15.27 16 10 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 11 C -0.31 -8.34 9.68 -14.93 -0.14 -8.48 16 12 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 14 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 15 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C -0.12 -1.31 2.74 -89.80 -0.25 -1.55 16 20 C -0.14 -1.37 7.40 -25.92 -0.19 -1.57 16 21 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 22 C -0.13 -1.12 6.58 -25.92 -0.17 -1.29 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.71 7.45 -51.93 -0.39 0.32 16 26 H 0.38 3.68 6.81 45.56 0.31 3.99 16 27 H 0.42 7.20 6.87 -40.82 -0.28 6.91 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.11 1.29 7.62 -51.93 -0.40 0.89 16 33 H 0.08 0.71 5.90 -51.93 -0.31 0.40 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.79 7.77 -51.93 -0.40 0.38 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -30.76 318.51 -5.81 -36.57 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -4.68 Total: 18.00 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -1.01 Total: 5.89 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.33 Total: -48.96 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.23 Total: -31.83 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.76 -5.81 -36.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488461936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.318 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds