Wall clock time and date at job start Mon Mar 30 2020 01:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47103 * 2 1 4 4 C 1.50701 * 109.46986 * 119.99708 * 2 1 3 5 5 O 1.21284 * 119.99832 * 95.00037 * 4 2 1 6 6 N 1.34771 * 120.00418 * 275.00230 * 4 2 1 7 7 C 1.46500 * 120.00116 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47083 * 179.97438 * 7 6 4 9 9 O 1.21294 * 119.99961 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00057 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00121 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99996 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00114 * 180.02562 * 11 10 8 14 14 N 1.31413 * 119.99846 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99830 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47284 * 60.00187 * 15 13 11 17 17 H 1.48506 * 109.46949 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47331 * 299.99661 * 15 13 11 19 19 C 1.52997 * 109.47155 * 239.99782 * 2 1 3 20 20 C 1.53784 * 113.61270 * 157.49797 * 19 2 1 21 21 C 1.53779 * 87.08045 * 220.02125 * 20 19 2 22 22 C 1.53779 * 87.08402 * 25.43458 * 21 20 19 23 23 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47333 * 300.00168 * 1 2 3 25 25 H 1.09000 * 109.47214 * 60.00017 * 1 2 3 26 26 H 0.96701 * 113.99828 * 179.97438 * 3 2 1 27 27 H 0.96998 * 119.99822 * 359.97438 * 6 4 2 28 28 H 1.09002 * 109.46958 * 299.99333 * 7 6 4 29 29 H 1.08992 * 109.47284 * 59.99844 * 7 6 4 30 30 H 0.97002 * 120.00267 * 359.97438 * 10 8 7 31 31 H 0.97000 * 119.99728 * 179.97438 * 14 13 11 32 32 H 1.08994 * 112.91116 * 288.75167 * 19 2 1 33 33 H 1.09002 * 113.61478 * 334.57090 * 20 19 2 34 34 H 1.09004 * 113.61162 * 105.47268 * 20 19 2 35 35 H 1.09006 * 113.61307 * 270.88660 * 21 20 19 36 36 H 1.09007 * 113.61642 * 139.98417 * 21 20 19 37 37 H 1.08997 * 113.61646 * 220.02209 * 22 21 20 38 38 H 1.08998 * 113.69354 * 89.12517 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3207 -1.8871 1.1761 6 7 2.1610 -0.0381 2.3915 7 6 2.6498 -0.7286 3.5875 8 6 2.7009 0.2399 4.7410 9 8 2.3619 1.3933 4.5799 10 7 3.1224 -0.1758 5.9517 11 6 3.1684 0.7051 7.0013 12 1 2.8673 1.7323 6.8577 13 6 3.6034 0.2766 8.2494 14 7 3.9703 -0.9732 8.4240 15 14 3.6654 1.4767 9.6795 16 1 2.3037 2.0098 9.9378 17 1 4.1606 0.7767 10.8921 18 1 4.5807 2.5974 9.3460 19 6 2.0400 -0.7213 -1.2492 20 6 3.4727 -0.3277 -1.6460 21 6 2.9922 -0.3573 -3.1065 22 6 1.5811 -0.0722 -2.5657 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.9703 1.4237 0.0004 27 1 1.9306 0.9032 2.4349 28 1 1.9775 -1.5508 3.8326 29 1 3.6491 -1.1203 3.3980 30 1 3.3925 -1.0985 6.0809 31 1 4.2743 -1.2722 9.2952 32 1 1.8771 -1.7984 -1.2134 33 1 3.7639 0.6648 -1.3021 34 1 4.2151 -1.0916 -1.4150 35 1 3.0897 -1.3350 -3.5785 36 1 3.3976 0.4504 -3.7160 37 1 0.7966 -0.6299 -3.0772 38 1 1.3539 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488461936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:19 Heat of formation + Delta-G solvation = -134.721099 kcal Electronic energy + Delta-G solvation = -20917.855105 eV Core-core repulsion = 17566.738996 eV Total energy + Delta-G solvation = -3351.116109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.79757 -40.36326 -39.30806 -36.99758 -36.25535 -35.23752 -33.39622 -32.47534 -29.42564 -27.16688 -26.52773 -26.17793 -23.90780 -21.40772 -21.33453 -20.20188 -20.12002 -19.30897 -17.90596 -17.51771 -16.94019 -16.74065 -16.56907 -16.08786 -15.88597 -15.76095 -15.15900 -14.67572 -14.26479 -13.99185 -13.59621 -13.55568 -13.47897 -13.34767 -13.22089 -12.99076 -12.90952 -12.60675 -12.48790 -12.25936 -12.14224 -11.58039 -11.49362 -11.28035 -11.02432 -10.62062 -10.46744 -10.25322 -10.10696 -8.52719 -6.03266 1.36570 1.41932 1.43286 1.52843 1.88621 1.93712 2.29760 3.06710 3.11905 3.14228 3.42906 3.62138 3.68378 3.87392 4.00244 4.18446 4.22978 4.31357 4.37495 4.39052 4.72177 4.76077 4.82895 4.88708 4.95089 5.06562 5.12504 5.15748 5.22798 5.32801 5.36521 5.61300 5.89403 6.30045 6.46100 6.59915 7.01369 7.07342 7.41621 7.92086 8.63948 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044930 B = 0.003448 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.042999 B = 8117.680481 C = 8256.834718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.138 3.862 3 O -0.548 6.548 4 C 0.487 3.513 5 O -0.571 6.571 6 N -0.700 5.700 7 C 0.118 3.882 8 C 0.431 3.569 9 O -0.623 6.623 10 N -0.558 5.558 11 C -0.340 4.340 12 H 0.086 0.914 13 C -0.009 4.009 14 N -0.916 5.916 15 Si 0.997 3.003 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.269 1.269 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.131 4.131 22 C -0.120 4.120 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.387 0.613 27 H 0.415 0.585 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.399 0.601 31 H 0.280 0.720 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 0.123 -19.204 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.094 3.906 3 O -0.356 6.356 4 C 0.273 3.727 5 O -0.450 6.450 6 N -0.354 5.354 7 C -0.010 4.010 8 C 0.218 3.782 9 O -0.511 6.511 10 N -0.194 5.194 11 C -0.469 4.469 12 H 0.104 0.896 13 C -0.210 4.210 14 N -0.556 5.556 15 Si 0.820 3.180 16 H -0.195 1.195 17 H -0.196 1.196 18 H -0.194 1.194 19 C -0.147 4.147 20 C -0.186 4.186 21 C -0.169 4.169 22 C -0.157 4.157 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.238 0.762 27 H 0.254 0.746 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.233 0.767 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.687 0.073 -19.140 19.492 hybrid contribution 0.855 0.005 1.295 1.551 sum -2.832 0.077 -17.845 18.069 Atomic orbital electron populations 1.21757 0.89466 1.03649 1.04465 1.21280 0.97121 0.82253 0.89938 1.86590 1.28285 1.24197 1.96567 1.22072 0.77409 0.87519 0.85655 1.90666 1.51285 1.17254 1.85830 1.45810 1.65644 1.15567 1.08391 1.20812 1.01801 0.94183 0.84157 1.20415 0.83701 0.89219 0.84843 1.90486 1.55636 1.20843 1.84132 1.41837 1.56710 1.12963 1.07852 1.19718 1.43922 0.94393 0.88861 0.89573 1.26134 0.95474 0.98490 1.00924 1.69674 1.43196 1.16486 1.26238 0.84927 0.78956 0.77619 0.76492 1.19487 1.19564 1.19420 1.23101 0.97880 1.00538 0.93149 1.23045 0.95618 1.01839 0.98092 1.22726 0.96303 1.02617 0.95217 1.22888 0.97518 1.01573 0.93759 0.90163 0.92089 0.88512 0.76173 0.74581 0.88904 0.88759 0.76725 0.91012 0.88646 0.89164 0.92285 0.89759 0.90190 0.90320 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.63 71.98 0.62 -2.14 16 2 C 0.14 3.17 0.90 -11.54 -0.01 3.16 16 3 O -0.55 -11.91 11.56 -148.98 -1.72 -13.63 16 4 C 0.49 14.84 6.68 87.66 0.59 15.43 16 5 O -0.57 -20.46 15.95 -3.04 -0.05 -20.51 16 6 N -0.70 -23.29 5.44 -466.80 -2.54 -25.83 16 7 C 0.12 4.36 6.15 85.63 0.53 4.88 16 8 C 0.43 20.06 7.85 87.66 0.69 20.75 16 9 O -0.62 -32.56 15.24 -3.07 -0.05 -32.61 16 10 N -0.56 -28.15 5.29 -306.98 -1.62 -29.77 16 11 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 12 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 13 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 14 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 15 Si 1.00 41.71 29.55 68.60 2.03 43.74 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 C -0.13 -2.52 2.74 -10.27 -0.03 -2.55 16 20 C -0.15 -2.65 7.40 31.12 0.23 -2.42 16 21 C -0.13 -1.84 8.08 31.12 0.25 -1.59 16 22 C -0.12 -1.77 6.58 31.12 0.20 -1.56 16 23 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.10 1.56 7.45 -2.39 -0.02 1.54 16 26 H 0.39 6.96 6.81 -74.06 -0.50 6.46 16 27 H 0.42 14.24 6.87 -92.71 -0.64 13.61 16 28 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 31 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.10 2.18 7.62 -2.39 -0.02 2.16 16 33 H 0.09 1.42 5.90 -2.39 -0.01 1.41 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.35 7.77 -2.39 -0.02 1.33 16 Total: -1.00 -64.99 318.51 -0.09 -65.07 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: -0.77 Total: 45.97 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 4.35 Total: 15.97 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -3.88 Total: -104.00 kcal Atomic # 8 Polarization: -64.93 SS G_CDS: -1.82 Total: -66.75 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -64.99 -0.09 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488461936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.649 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds