Wall clock time and date at job start Mon Mar 30 2020 01:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47383 * 2 1 4 4 N 1.46501 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99890 * 264.54396 * 4 3 2 6 6 H 1.07994 * 120.00025 * 146.01079 * 5 4 3 7 7 C 1.38954 * 120.00106 * 326.00744 * 5 4 3 8 8 N 1.31413 * 119.99740 * 337.81574 * 7 5 4 9 9 Si 1.86795 * 120.00086 * 157.81410 * 7 5 4 10 10 H 1.48499 * 109.47438 * 60.00054 * 9 7 5 11 11 H 1.48502 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47390 * 300.00227 * 9 7 5 13 13 C 1.34779 * 119.99962 * 84.53662 * 4 3 2 14 14 O 1.21289 * 119.99872 * 0.02562 * 13 4 3 15 15 C 1.50699 * 119.99674 * 180.02562 * 13 4 3 16 16 C 1.53007 * 109.46676 * 180.02562 * 15 13 4 17 17 N 1.46504 * 109.46693 * 180.02562 * 16 15 13 18 18 C 1.47086 * 125.56048 * 90.00149 * 17 16 15 19 19 C 1.54093 * 103.77617 * 180.02562 * 18 17 16 20 20 O 1.45701 * 104.12949 * 359.92754 * 19 18 17 21 21 C 1.34001 * 125.55425 * 270.01783 * 17 16 15 22 22 O 1.21509 * 123.07578 * 0.03179 * 21 17 16 23 23 H 1.08996 * 109.46793 * 300.00355 * 1 2 3 24 24 H 1.08996 * 109.46756 * 59.99400 * 1 2 3 25 25 H 1.08992 * 109.47083 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47186 * 239.99718 * 2 1 3 27 27 H 1.08997 * 109.46883 * 120.00066 * 2 1 3 28 28 H 1.09005 * 109.46877 * 60.00147 * 3 2 1 29 29 H 1.08997 * 109.47165 * 299.99893 * 3 2 1 30 30 H 0.97001 * 119.99518 * 179.97438 * 8 7 5 31 31 H 1.08993 * 109.47387 * 60.00530 * 15 13 4 32 32 H 1.09001 * 109.47080 * 300.00203 * 15 13 4 33 33 H 1.08993 * 109.47210 * 59.99894 * 16 15 13 34 34 H 1.09001 * 109.47102 * 299.99662 * 16 15 13 35 35 H 1.08999 * 110.56824 * 61.44438 * 18 17 16 36 36 H 1.09001 * 110.68913 * 298.65104 * 18 17 16 37 37 H 1.08997 * 110.52262 * 118.62593 * 19 18 17 38 38 H 1.09000 * 110.51961 * 241.23045 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.5551 1.1810 6 1 5.1327 1.0422 1.3098 7 6 3.6749 2.3294 2.2130 8 7 2.8039 3.2777 1.9504 9 14 4.2189 2.0221 3.9733 10 1 5.6873 2.2168 4.0788 11 1 3.5266 2.9741 4.8787 12 1 3.8750 0.6308 4.3621 13 6 4.1785 1.3315 -1.1628 14 8 3.5716 1.2321 -2.2082 15 6 5.6855 1.3308 -1.1633 16 6 6.1949 1.1945 -2.5997 17 7 7.6599 1.1932 -2.6001 18 6 8.5144 0.0013 -2.4876 19 6 9.9457 0.5695 -2.5413 20 8 9.7528 2.0071 -2.6787 21 6 8.4400 2.2780 -2.7028 22 8 7.9981 3.4049 -2.8084 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 2.4433 3.8180 2.6709 31 1 6.0487 0.4935 -0.5677 32 1 6.0494 2.2654 -0.7363 33 1 5.8317 2.0320 -3.1951 34 1 5.8310 0.2601 -3.0270 35 1 8.3394 -0.6756 -3.3239 36 1 8.3404 -0.5092 -1.5404 37 1 10.4818 0.3423 -1.6198 38 1 10.4826 0.1719 -3.4026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490754662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:15 Heat of formation + Delta-G solvation = -129.375571 kcal Electronic energy + Delta-G solvation = -21255.067839 eV Core-core repulsion = 17904.183530 eV Total energy + Delta-G solvation = -3350.884309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49403 -40.55171 -38.33396 -37.31398 -36.59958 -34.57824 -33.31924 -32.41537 -30.19204 -27.77250 -26.79934 -25.10870 -24.40833 -22.49955 -21.77972 -20.96399 -18.92061 -18.39331 -18.06142 -17.88655 -17.40039 -16.76388 -16.30734 -16.11088 -15.71804 -15.46672 -15.04153 -14.92638 -14.56681 -14.51063 -14.05719 -13.78324 -13.37665 -13.21402 -13.09265 -13.07296 -12.84173 -12.58538 -12.38588 -12.22393 -12.08789 -11.96290 -11.76553 -11.61260 -11.51520 -10.99868 -10.44697 -9.92199 -9.50826 -8.32392 -6.05869 1.37836 1.42280 1.47657 1.56590 1.60639 1.99496 2.30992 2.62280 2.98846 3.09764 3.41223 3.69589 3.97043 4.12007 4.16603 4.24953 4.31953 4.37498 4.50439 4.56002 4.61052 4.72007 4.80420 4.84279 4.96117 4.98368 5.03941 5.10357 5.23038 5.36650 5.39061 5.44153 5.57791 5.99311 6.34679 6.39630 6.90752 7.09671 7.56464 7.99921 8.70008 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.005477 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.578351 B = 5111.002247 C = 6013.849121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.113 3.887 4 N -0.448 5.448 5 C -0.359 4.359 6 H 0.103 0.897 7 C 0.000 4.000 8 N -0.892 5.892 9 Si 0.983 3.017 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.262 1.262 13 C 0.456 3.544 14 O -0.633 6.633 15 C -0.121 4.121 16 C 0.176 3.824 17 N -0.623 5.623 18 C 0.058 3.942 19 C 0.037 3.963 20 O -0.347 6.347 21 C 0.634 3.366 22 O -0.581 6.581 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.027 0.973 30 H 0.272 0.728 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.740 -12.291 -2.587 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C -0.010 4.010 4 N -0.165 5.165 5 C -0.486 4.486 6 H 0.120 0.880 7 C -0.203 4.203 8 N -0.529 5.529 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.186 1.186 13 C 0.246 3.754 14 O -0.522 6.522 15 C -0.162 4.162 16 C 0.055 3.945 17 N -0.370 5.370 18 C -0.064 4.064 19 C -0.036 4.036 20 O -0.257 6.257 21 C 0.388 3.612 22 O -0.470 6.470 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.299 -11.480 -3.037 15.083 hybrid contribution -0.113 0.503 0.866 1.008 sum 9.187 -10.977 -2.171 14.478 Atomic orbital electron populations 1.21616 0.93800 1.02395 1.01619 1.21703 0.97131 0.96538 1.00684 1.21441 0.81404 0.96601 1.01583 1.43777 1.05355 1.61861 1.05509 1.19767 1.08151 1.29927 0.90743 0.87990 1.26240 0.96922 0.92801 1.04346 1.70060 1.31326 1.16997 1.34535 0.85143 0.78791 0.78521 0.76880 1.18930 1.21111 1.18622 1.20829 0.90553 0.80764 0.83246 1.90495 1.71417 1.57977 1.32344 1.21580 0.92174 1.03819 0.98632 1.20849 0.74129 1.04149 0.95378 1.48167 1.06942 1.07422 1.74453 1.23263 0.88107 0.88064 1.06930 1.24806 0.97089 0.73796 1.07939 1.87318 1.21853 1.29968 1.86568 1.18811 0.80876 0.85348 0.76134 1.91006 1.75030 1.23593 1.57363 0.92732 0.93065 0.90706 0.93677 0.92447 0.89058 0.95410 0.91808 0.87681 0.91613 0.92191 0.87057 0.86041 0.86976 0.85099 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.91 71.98 0.71 -3.69 16 2 C -0.12 -4.91 6.22 30.60 0.19 -4.72 16 3 C 0.11 5.56 4.90 86.38 0.42 5.98 16 4 N -0.45 -22.75 2.56 -635.53 -1.63 -24.38 16 5 C -0.36 -17.92 8.70 84.04 0.73 -17.19 16 6 H 0.10 4.70 6.97 -2.91 -0.02 4.68 16 7 C 0.00 0.00 4.92 84.93 0.42 0.42 16 8 N -0.89 -48.07 11.34 21.66 0.25 -47.82 16 9 Si 0.98 38.85 29.61 68.60 2.03 40.88 16 10 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 11 H -0.29 -11.32 7.11 99.48 0.71 -10.62 16 12 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 13 C 0.46 22.19 7.60 87.66 0.67 22.86 16 14 O -0.63 -33.15 15.65 -3.06 -0.05 -33.20 16 15 C -0.12 -4.76 4.68 29.85 0.14 -4.62 16 16 C 0.18 5.95 5.30 86.38 0.46 6.40 16 17 N -0.62 -17.39 2.96 -951.02 -2.82 -20.21 16 18 C 0.06 0.81 7.70 86.64 0.67 1.47 16 19 C 0.04 0.44 8.22 72.35 0.59 1.04 16 20 O -0.35 -9.35 11.11 -50.08 -0.56 -9.90 16 21 C 0.63 22.03 8.85 129.91 1.15 23.18 16 22 O -0.58 -26.81 17.55 19.64 0.34 -26.47 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 4.76 5.36 -2.38 -0.01 4.75 16 29 H 0.03 1.45 7.59 -2.39 -0.02 1.43 16 30 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.11 3.52 7.64 -2.39 -0.02 3.50 16 32 H 0.07 2.94 8.10 -2.39 -0.02 2.92 16 33 H 0.06 2.42 7.89 -2.39 -0.02 2.40 16 34 H 0.11 3.23 8.10 -2.39 -0.02 3.21 16 35 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -74.75 322.32 4.77 -69.97 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.05 Total: 19.99 kcal Atomic # 6 Polarization: 24.99 SS G_CDS: 6.15 Total: 31.14 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -4.20 Total: -92.41 kcal Atomic # 8 Polarization: -69.32 SS G_CDS: -0.26 Total: -69.58 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -74.75 4.77 -69.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490754662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.404 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds