Wall clock time and date at job start Mon Mar 30 2020 00:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48498 * 109.47338 * 270.00703 * 3 2 1 5 5 H 1.48503 * 109.46862 * 30.00339 * 3 2 1 6 6 H 1.48494 * 109.46958 * 149.99988 * 3 2 1 7 7 C 1.37877 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47036 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46940 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47166 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00126 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99733 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00026 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47066 * 180.02562 * 15 13 12 17 17 N 1.46499 * 109.46842 * 180.02562 * 16 15 13 18 18 C 1.47093 * 125.55889 * 90.00569 * 17 16 15 19 19 C 1.54091 * 103.77776 * 180.02562 * 18 17 16 20 20 O 1.45704 * 104.12991 * 359.92869 * 19 18 17 21 21 C 1.34001 * 125.56070 * 270.01636 * 17 16 15 22 22 O 1.21513 * 123.07229 * 0.03827 * 21 17 16 23 23 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46863 * 60.00466 * 9 7 2 25 25 H 1.08996 * 109.46918 * 300.00536 * 9 7 2 26 26 H 1.08991 * 109.47688 * 60.00259 * 10 9 7 27 27 H 1.08996 * 109.47183 * 299.99735 * 10 9 7 28 28 H 1.09004 * 109.47022 * 59.99788 * 11 10 9 29 29 H 1.08999 * 109.47141 * 300.00230 * 11 10 9 30 30 H 0.97003 * 120.00349 * 0.02562 * 12 11 10 31 31 H 1.09004 * 109.47083 * 60.00413 * 15 13 12 32 32 H 1.08996 * 109.47409 * 300.00047 * 15 13 12 33 33 H 1.09004 * 109.47022 * 60.00143 * 16 15 13 34 34 H 1.08996 * 109.46855 * 300.00154 * 16 15 13 35 35 H 1.09000 * 110.56724 * 61.43908 * 18 17 16 36 36 H 1.09004 * 110.68940 * 298.64853 * 18 17 16 37 37 H 1.09002 * 110.52360 * 118.62859 * 19 18 17 38 38 H 1.09002 * 110.51975 * 241.22721 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7908 -7.5929 -0.0020 15 6 2.9624 -8.5167 -0.0031 16 6 2.1975 -9.8418 -0.0036 17 7 3.1495 -10.9552 -0.0042 18 6 3.7055 -11.6059 1.1921 19 6 4.6359 -12.6928 0.6198 20 8 4.5087 -12.5455 -0.8242 21 6 3.6561 -11.5468 -1.0946 22 8 3.3691 -11.2092 -2.2260 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6044 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8540 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8885 30 1 3.3861 -5.9234 -0.0014 31 1 3.5898 -8.4593 0.8864 32 1 3.5884 -8.4587 -0.8935 33 1 1.5704 -9.8989 -0.8934 34 1 1.5712 -9.9001 0.8866 35 1 2.9110 -12.0563 1.7871 36 1 4.2727 -10.8926 1.7901 37 1 5.6653 -12.5179 0.9325 38 1 4.3052 -13.6829 0.9335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491160158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:41 Heat of formation + Delta-G solvation = -150.704434 kcal Electronic energy + Delta-G solvation = -19765.681769 eV Core-core repulsion = 16413.872571 eV Total energy + Delta-G solvation = -3351.809198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.51578 -40.76906 -38.35406 -37.19657 -36.69581 -35.19522 -33.32167 -32.50575 -30.27801 -28.63821 -26.17022 -24.63476 -24.36326 -22.31639 -22.00813 -21.13107 -18.73774 -18.54515 -18.16870 -17.89463 -17.47624 -16.94355 -16.84099 -16.41455 -16.14333 -15.59070 -15.12090 -15.04815 -14.65109 -14.34531 -14.27962 -14.06113 -13.76667 -13.44095 -13.16678 -13.11004 -12.75259 -12.55283 -12.37488 -12.28890 -11.80003 -11.67725 -11.62903 -11.60351 -11.25146 -10.92164 -10.55938 -10.10042 -9.99467 -8.19991 -6.31561 1.33193 1.41658 1.42946 1.53851 1.57105 1.60439 2.25549 2.42615 2.65879 3.13801 3.39119 3.64975 3.71491 3.91915 4.06943 4.18977 4.20085 4.24896 4.45367 4.55411 4.57205 4.64532 4.78770 4.87430 4.93522 4.96270 5.01194 5.16756 5.33052 5.43495 5.52593 5.70418 5.83898 6.21673 6.31363 6.55430 6.86204 6.88448 7.23675 7.38170 8.92120 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.048844 B = 0.002422 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.120923 B =11556.983919 C =11678.115786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.128 3.872 12 N -0.715 5.715 13 C 0.512 3.488 14 O -0.588 6.588 15 C -0.145 4.145 16 C 0.164 3.836 17 N -0.623 5.623 18 C 0.059 3.941 19 C 0.034 3.966 20 O -0.349 6.349 21 C 0.635 3.365 22 O -0.579 6.579 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.006 1.006 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.417 0.583 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.973 -25.571 7.731 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.367 5.367 13 C 0.299 3.701 14 O -0.469 6.469 15 C -0.185 4.185 16 C 0.043 3.957 17 N -0.369 5.369 18 C -0.062 4.062 19 C -0.039 4.039 20 O -0.260 6.260 21 C 0.389 3.611 22 O -0.467 6.467 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.012 0.988 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.253 0.747 31 H 0.154 0.846 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.977 -25.604 7.029 29.128 hybrid contribution 0.137 1.257 -0.238 1.287 sum 12.114 -24.346 6.791 28.029 Atomic orbital electron populations 1.70111 1.07954 1.27806 1.51705 1.26037 0.95758 1.03604 0.94803 0.85408 0.78719 0.78266 0.78412 1.19955 1.21014 1.18319 1.21687 0.93752 0.92024 1.50419 0.91522 1.18954 0.94487 0.93049 0.95040 1.21591 0.98404 0.91847 1.02123 1.21229 0.92030 0.85632 1.00680 1.46005 1.11249 1.05154 1.74269 1.21031 0.89475 0.84634 0.74952 1.90711 1.19053 1.85426 1.51734 1.21978 0.98265 0.91317 1.06988 1.20936 0.88563 0.81438 1.04772 1.48113 1.46790 1.35438 1.06607 1.23260 0.99040 0.96073 0.87820 1.24799 1.03673 1.01947 0.73481 1.87347 1.59601 1.49559 1.29443 1.18830 0.78008 0.78759 0.85467 1.91019 1.64736 1.67678 1.23295 0.92810 0.99187 0.98801 0.91072 0.91639 0.93637 0.92820 0.74655 0.84588 0.88237 0.91686 0.87020 0.86610 0.85988 0.84927 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.13 4.41 5.67 86.38 0.49 4.90 16 12 N -0.71 -18.19 5.56 -463.06 -2.57 -20.76 16 13 C 0.51 13.17 7.83 87.66 0.69 13.86 16 14 O -0.59 -20.54 15.98 -3.02 -0.05 -20.58 16 15 C -0.14 -2.32 6.02 29.85 0.18 -2.14 16 16 C 0.16 2.88 5.30 86.38 0.46 3.34 16 17 N -0.62 -9.15 2.96 -951.01 -2.82 -11.97 16 18 C 0.06 0.19 7.70 86.64 0.67 0.86 16 19 C 0.03 0.12 8.22 72.35 0.59 0.71 16 20 O -0.35 -6.18 11.11 -50.08 -0.56 -6.74 16 21 C 0.63 14.61 8.85 129.91 1.15 15.76 16 22 O -0.58 -19.61 17.55 19.63 0.34 -19.26 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.42 7.71 8.47 -92.71 -0.79 6.93 16 31 H 0.14 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.60 7.89 -2.38 -0.02 1.58 16 34 H 0.11 1.60 8.10 -2.39 -0.02 1.58 16 35 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.12 -0.22 8.14 -2.38 -0.02 -0.24 16 37 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: -1.00 -83.54 329.92 2.16 -81.38 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.27 Total: 3.81 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.23 Total: 5.32 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -5.10 Total: -89.59 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.26 Total: -46.59 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -83.54 2.16 -81.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491160158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.323 kcal (2) G-P(sol) polarization free energy of solvation -83.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds