Wall clock time and date at job start Mon Mar 30 2020 01:22:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52995 * 109.47150 * 2 1
4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1
5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1
6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2
7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2
8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3
10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5
11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5
12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5
13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1
14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2
15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3
16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3
17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13
18 18 N 1.46496 * 109.47030 * 180.02562 * 17 16 14
19 19 C 1.47097 * 125.56016 * 89.99762 * 18 17 16
20 20 C 1.54093 * 103.77265 * 179.97438 * 19 18 17
21 21 O 1.45699 * 104.01195 * 359.97438 * 20 19 18
22 22 C 1.33767 * 109.47398 * 359.75732 * 21 20 19
23 23 O 1.21514 * 123.07173 * 180.23806 * 22 21 20
24 24 H 1.09007 * 109.47386 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47158 * 300.00283 * 1 2 3
26 26 H 1.09004 * 109.47334 * 60.00501 * 1 2 3
27 27 H 1.09000 * 109.47158 * 239.99717 * 2 1 3
28 28 H 1.09004 * 109.47130 * 120.00013 * 2 1 3
29 29 H 0.96995 * 120.00082 * 180.02562 * 8 7 5
30 30 H 0.96995 * 120.00050 * 264.72646 * 13 3 2
31 31 H 1.09004 * 109.47043 * 299.99732 * 16 14 13
32 32 H 1.09000 * 109.46978 * 59.99653 * 16 14 13
33 33 H 1.09000 * 109.46497 * 299.99731 * 17 16 14
34 34 H 1.08987 * 109.47025 * 59.99846 * 17 16 14
35 35 H 1.09001 * 110.56501 * 298.54755 * 19 18 17
36 36 H 1.08997 * 110.56529 * 61.40920 * 19 18 17
37 37 H 1.09004 * 110.51895 * 118.63512 * 20 19 18
38 38 H 1.08999 * 110.51970 * 241.22952 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8417
5 6 3.5419 1.4442 0.1238
6 1 4.1472 1.8888 -0.6524
7 6 4.1432 0.8783 1.2279
8 7 3.4061 0.3374 2.1733
9 14 6.0049 0.8812 1.3817
10 1 6.4417 2.1141 2.0847
11 1 6.4395 -0.3098 2.1549
12 1 6.6135 0.8414 0.0277
13 7 1.6524 2.0974 -1.2519
14 6 0.4351 2.6643 -1.3670
15 8 -0.3396 2.6319 -0.4344
16 6 0.0366 3.3385 -2.6545
17 6 -1.3827 3.8942 -2.5212
18 7 -1.7702 4.5491 -3.7731
19 6 -2.4398 3.8961 -4.9084
20 6 -2.6071 5.0307 -5.9376
21 8 -2.0210 6.1918 -5.2810
22 6 -1.5787 5.8422 -4.0680
23 8 -1.0477 6.6247 -3.3048
24 1 -0.3634 -1.0277 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 1.8933 -0.5139 0.8900
29 1 3.8292 -0.0604 2.9502
30 1 2.2734 2.1265 -1.9965
31 1 0.7281 4.1540 -2.8668
32 1 0.0680 2.6144 -3.4686
33 1 -2.0737 3.0784 -2.3093
34 1 -1.4144 4.6181 -1.7071
35 1 -1.8161 3.0998 -5.3144
36 1 -3.4121 3.5064 -4.6069
37 1 -2.0670 4.7970 -6.8551
38 1 -3.6625 5.2018 -6.1496
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000495322077.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:22:33
Heat of formation + Delta-G solvation = -113.427733 kcal
Electronic energy + Delta-G solvation = -20930.011195 eV
Core-core repulsion = 17579.818435 eV
Total energy + Delta-G solvation = -3350.192759 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.68529 -39.13070 -37.28874 -36.04121 -35.01955 -32.44358 -31.82921 -30.78538
-29.40877 -27.06050 -24.83437 -23.84654 -22.91596 -21.09266 -20.13131 -19.33534
-17.79991 -17.34735 -17.04646 -16.82744 -15.74175 -15.32960 -15.28842 -14.74667
-14.41175 -14.33314 -13.90402 -13.76451 -13.38772 -12.88421 -12.70950 -12.57104
-12.14342 -11.94786 -11.52081 -11.26830 -11.08822 -10.97152 -10.91400 -10.84467
-10.66979 -10.33237 -10.19527 -9.65431 -9.30309 -9.06379 -8.91689 -8.50522
-7.84546 -6.13149 -4.22571 2.25049 2.61147 3.24173 3.24582 3.31351
3.32589 3.36560 3.84673 4.12366 4.32043 4.39948 4.47812 4.88591
4.97096 4.98472 5.15288 5.18250 5.33626 5.39786 5.67724 5.91463
5.95186 6.27897 6.35731 6.41881 6.62663 7.00177 7.17027 7.18267
7.34329 7.43425 7.60303 7.71430 7.88764 7.90157 8.16804 8.64509
8.76310 9.10617 9.44915 10.92189
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.031833 B = 0.003779 C = 0.003561
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.386326 B = 7407.828533 C = 7861.028261
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.127 4.127
3 C 0.269 3.731
4 H 0.050 0.950
5 C -0.535 4.535
6 H 0.061 0.939
7 C 0.067 3.933
8 N -0.882 5.882
9 Si 0.901 3.099
10 H -0.279 1.279
11 H -0.285 1.285
12 H -0.274 1.274
13 N -0.707 5.707
14 C 0.506 3.494
15 O -0.551 6.551
16 C -0.163 4.163
17 C 0.164 3.836
18 N -0.630 5.630
19 C 0.063 3.937
20 C 0.041 3.959
21 O -0.332 6.332
22 C 0.640 3.360
23 O -0.517 6.517
24 H 0.022 0.978
25 H 0.050 0.950
26 H 0.037 0.963
27 H 0.030 0.970
28 H 0.099 0.901
29 H 0.264 0.736
30 H 0.388 0.612
31 H 0.092 0.908
32 H 0.088 0.912
33 H 0.094 0.906
34 H 0.098 0.902
35 H 0.093 0.907
36 H 0.093 0.907
37 H 0.105 0.895
38 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.160 2.692 -16.436 20.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.166 4.166
3 C 0.167 3.833
4 H 0.067 0.933
5 C -0.573 4.573
6 H 0.079 0.921
7 C -0.137 4.137
8 N -0.520 5.520
9 Si 0.728 3.272
10 H -0.205 1.205
11 H -0.211 1.211
12 H -0.199 1.199
13 N -0.354 5.354
14 C 0.290 3.710
15 O -0.431 6.431
16 C -0.204 4.204
17 C 0.043 3.957
18 N -0.378 5.378
19 C -0.061 4.061
20 C -0.034 4.034
21 O -0.242 6.242
22 C 0.393 3.607
23 O -0.401 6.401
24 H 0.041 0.959
25 H 0.069 0.931
26 H 0.056 0.944
27 H 0.049 0.951
28 H 0.117 0.883
29 H 0.074 0.926
30 H 0.221 0.779
31 H 0.111 0.889
32 H 0.106 0.894
33 H 0.112 0.888
34 H 0.116 0.884
35 H 0.111 0.889
36 H 0.111 0.889
37 H 0.123 0.877
38 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -11.391 3.185 -15.259 19.306
hybrid contribution 1.309 -0.305 -0.410 1.405
sum -10.082 2.880 -15.669 18.853
Atomic orbital electron populations
1.21836 0.98375 0.97962 1.01190 1.21929 0.92594 0.99818 1.02270
1.18799 0.94225 0.89176 0.81059 0.93251 1.21241 0.90757 1.38997
1.06339 0.92111 1.24883 0.98620 0.94779 0.95377 1.69891 1.35134
1.37651 1.09296 0.86457 0.84851 0.77664 0.78188 1.20539 1.21073
1.19871 1.46503 1.14505 1.55747 1.18670 1.20083 0.83008 0.79285
0.88634 1.90683 1.51540 1.60190 1.40669 1.22069 0.98564 1.01693
0.98083 1.21080 0.94642 0.97904 0.82036 1.48198 1.62045 1.08939
1.18605 1.22829 0.99821 0.96701 0.86737 1.24271 1.00831 0.82063
0.96221 1.87282 1.72869 1.35437 1.28608 1.18542 0.78306 0.82768
0.81069 1.91081 1.46145 1.54473 1.48406 0.95909 0.93106 0.94365
0.95090 0.88286 0.92560 0.77947 0.88938 0.89379 0.88808 0.88389
0.88900 0.88894 0.87674 0.87719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.92 8.51 37.16 0.32 -2.61 16
2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16
3 C 0.27 6.66 2.24 -69.08 -0.15 6.50 16
4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16
5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16
6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16
7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16
8 N -0.88 -24.58 11.29 55.43 0.63 -23.95 16
9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16
10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16
12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
13 N -0.71 -14.14 5.02 -54.93 -0.28 -14.41 16
14 C 0.51 9.38 6.40 -10.99 -0.07 9.31 16
15 O -0.55 -12.05 13.12 5.55 0.07 -11.98 16
16 C -0.16 -2.18 6.02 -27.88 -0.17 -2.35 16
17 C 0.16 2.09 5.31 -4.04 -0.02 2.07 16
18 N -0.63 -6.93 2.96 -178.85 -0.53 -7.46 16
19 C 0.06 0.37 7.70 -3.15 -0.02 0.35 16
20 C 0.04 0.22 8.23 37.73 0.31 0.53 16
21 O -0.33 -3.78 11.09 -37.82 -0.42 -4.20 16
22 C 0.64 8.98 8.85 53.71 0.48 9.45 16
23 O -0.52 -9.64 17.54 -19.12 -0.34 -9.98 16
24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
25 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16
26 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16
27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16
29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
30 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16
31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16
32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16
33 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16
34 H 0.10 1.50 7.88 -51.94 -0.41 1.09 16
35 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16
36 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16
37 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16
38 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16
LS Contribution 317.32 15.07 4.78 4.78
Total: -1.00 -33.58 317.32 -6.48 -40.07
By element:
Atomic # 1 Polarization: 9.64 SS G_CDS: -5.50 Total: 4.14 kcal
Atomic # 6 Polarization: 7.32 SS G_CDS: 0.12 Total: 7.44 kcal
Atomic # 7 Polarization: -45.65 SS G_CDS: -0.18 Total: -45.83 kcal
Atomic # 8 Polarization: -25.47 SS G_CDS: -0.68 Total: -26.15 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -33.58 -6.48 -40.07 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000495322077.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.362 kcal
(2) G-P(sol) polarization free energy of solvation -33.584 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.428 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds