Wall clock time and date at job start Mon Mar 30 2020 01:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5 11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5 12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47030 * 180.02562 * 17 16 14 19 19 C 1.47097 * 125.56016 * 89.99762 * 18 17 16 20 20 C 1.54093 * 103.77265 * 179.97438 * 19 18 17 21 21 O 1.45699 * 104.01195 * 359.97438 * 20 19 18 22 22 C 1.33767 * 109.47398 * 359.75732 * 21 20 19 23 23 O 1.21514 * 123.07173 * 180.23806 * 22 21 20 24 24 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 26 26 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 27 27 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 28 28 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 29 29 H 0.96995 * 120.00082 * 180.02562 * 8 7 5 30 30 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 31 31 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 32 32 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 33 33 H 1.09000 * 109.46497 * 299.99731 * 17 16 14 34 34 H 1.08987 * 109.47025 * 59.99846 * 17 16 14 35 35 H 1.09001 * 110.56501 * 298.54755 * 19 18 17 36 36 H 1.08997 * 110.56529 * 61.40920 * 19 18 17 37 37 H 1.09004 * 110.51895 * 118.63512 * 20 19 18 38 38 H 1.08999 * 110.51970 * 241.22952 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4417 2.1141 2.0847 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8414 0.0277 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 6 -1.3827 3.8942 -2.5212 18 7 -1.7702 4.5491 -3.7731 19 6 -2.4398 3.8961 -4.9084 20 6 -2.6071 5.0307 -5.9376 21 8 -2.0210 6.1918 -5.2810 22 6 -1.5787 5.8422 -4.0680 23 8 -1.0477 6.6247 -3.3048 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0604 2.9502 30 1 2.2734 2.1265 -1.9965 31 1 0.7281 4.1540 -2.8668 32 1 0.0680 2.6144 -3.4686 33 1 -2.0737 3.0784 -2.3093 34 1 -1.4144 4.6181 -1.7071 35 1 -1.8161 3.0998 -5.3144 36 1 -3.4121 3.5064 -4.6069 37 1 -2.0670 4.7970 -6.8551 38 1 -3.6625 5.2018 -6.1496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495322077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:33 Heat of formation + Delta-G solvation = -113.427733 kcal Electronic energy + Delta-G solvation = -20930.011195 eV Core-core repulsion = 17579.818435 eV Total energy + Delta-G solvation = -3350.192759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68529 -39.13070 -37.28874 -36.04121 -35.01955 -32.44358 -31.82921 -30.78538 -29.40877 -27.06050 -24.83437 -23.84654 -22.91596 -21.09266 -20.13131 -19.33534 -17.79991 -17.34735 -17.04646 -16.82744 -15.74175 -15.32960 -15.28842 -14.74667 -14.41175 -14.33314 -13.90402 -13.76451 -13.38772 -12.88421 -12.70950 -12.57104 -12.14342 -11.94786 -11.52081 -11.26830 -11.08822 -10.97152 -10.91400 -10.84467 -10.66979 -10.33237 -10.19527 -9.65431 -9.30309 -9.06379 -8.91689 -8.50522 -7.84546 -6.13149 -4.22571 2.25049 2.61147 3.24173 3.24582 3.31351 3.32589 3.36560 3.84673 4.12366 4.32043 4.39948 4.47812 4.88591 4.97096 4.98472 5.15288 5.18250 5.33626 5.39786 5.67724 5.91463 5.95186 6.27897 6.35731 6.41881 6.62663 7.00177 7.17027 7.18267 7.34329 7.43425 7.60303 7.71430 7.88764 7.90157 8.16804 8.64509 8.76310 9.10617 9.44915 10.92189 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.003779 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.386326 B = 7407.828533 C = 7861.028261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.551 6.551 16 C -0.163 4.163 17 C 0.164 3.836 18 N -0.630 5.630 19 C 0.063 3.937 20 C 0.041 3.959 21 O -0.332 6.332 22 C 0.640 3.360 23 O -0.517 6.517 24 H 0.022 0.978 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 2.692 -16.436 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.204 4.204 17 C 0.043 3.957 18 N -0.378 5.378 19 C -0.061 4.061 20 C -0.034 4.034 21 O -0.242 6.242 22 C 0.393 3.607 23 O -0.401 6.401 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.391 3.185 -15.259 19.306 hybrid contribution 1.309 -0.305 -0.410 1.405 sum -10.082 2.880 -15.669 18.853 Atomic orbital electron populations 1.21836 0.98375 0.97962 1.01190 1.21929 0.92594 0.99818 1.02270 1.18799 0.94225 0.89176 0.81059 0.93251 1.21241 0.90757 1.38997 1.06339 0.92111 1.24883 0.98620 0.94779 0.95377 1.69891 1.35134 1.37651 1.09296 0.86457 0.84851 0.77664 0.78188 1.20539 1.21073 1.19871 1.46503 1.14505 1.55747 1.18670 1.20083 0.83008 0.79285 0.88634 1.90683 1.51540 1.60190 1.40669 1.22069 0.98564 1.01693 0.98083 1.21080 0.94642 0.97904 0.82036 1.48198 1.62045 1.08939 1.18605 1.22829 0.99821 0.96701 0.86737 1.24271 1.00831 0.82063 0.96221 1.87282 1.72869 1.35437 1.28608 1.18542 0.78306 0.82768 0.81069 1.91081 1.46145 1.54473 1.48406 0.95909 0.93106 0.94365 0.95090 0.88286 0.92560 0.77947 0.88938 0.89379 0.88808 0.88389 0.88900 0.88894 0.87674 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.95 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.14 5.02 -54.93 -0.28 -14.41 16 14 C 0.51 9.38 6.40 -10.99 -0.07 9.31 16 15 O -0.55 -12.05 13.12 5.55 0.07 -11.98 16 16 C -0.16 -2.18 6.02 -27.88 -0.17 -2.35 16 17 C 0.16 2.09 5.31 -4.04 -0.02 2.07 16 18 N -0.63 -6.93 2.96 -178.85 -0.53 -7.46 16 19 C 0.06 0.37 7.70 -3.15 -0.02 0.35 16 20 C 0.04 0.22 8.23 37.73 0.31 0.53 16 21 O -0.33 -3.78 11.09 -37.82 -0.42 -4.20 16 22 C 0.64 8.98 8.85 53.71 0.48 9.45 16 23 O -0.52 -9.64 17.54 -19.12 -0.34 -9.98 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 26 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.10 1.50 7.88 -51.94 -0.41 1.09 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -33.58 317.32 -6.48 -40.07 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.50 Total: 4.14 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 0.12 Total: 7.44 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.18 Total: -45.83 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.68 Total: -26.15 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.58 -6.48 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495322077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.362 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds