Wall clock time and date at job start Mon Mar 30 2020 01:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5 11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5 12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47030 * 180.02562 * 17 16 14 19 19 C 1.47097 * 125.56016 * 89.99762 * 18 17 16 20 20 C 1.54093 * 103.77265 * 179.97438 * 19 18 17 21 21 O 1.45699 * 104.01195 * 359.97438 * 20 19 18 22 22 C 1.33767 * 109.47398 * 359.75732 * 21 20 19 23 23 O 1.21514 * 123.07173 * 180.23806 * 22 21 20 24 24 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 26 26 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 27 27 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 28 28 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 29 29 H 0.96995 * 120.00082 * 180.02562 * 8 7 5 30 30 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 31 31 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 32 32 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 33 33 H 1.09000 * 109.46497 * 299.99731 * 17 16 14 34 34 H 1.08987 * 109.47025 * 59.99846 * 17 16 14 35 35 H 1.09001 * 110.56501 * 298.54755 * 19 18 17 36 36 H 1.08997 * 110.56529 * 61.40920 * 19 18 17 37 37 H 1.09004 * 110.51895 * 118.63512 * 20 19 18 38 38 H 1.08999 * 110.51970 * 241.22952 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4417 2.1141 2.0847 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8414 0.0277 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 6 -1.3827 3.8942 -2.5212 18 7 -1.7702 4.5491 -3.7731 19 6 -2.4398 3.8961 -4.9084 20 6 -2.6071 5.0307 -5.9376 21 8 -2.0210 6.1918 -5.2810 22 6 -1.5787 5.8422 -4.0680 23 8 -1.0477 6.6247 -3.3048 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0604 2.9502 30 1 2.2734 2.1265 -1.9965 31 1 0.7281 4.1540 -2.8668 32 1 0.0680 2.6144 -3.4686 33 1 -2.0737 3.0784 -2.3093 34 1 -1.4144 4.6181 -1.7071 35 1 -1.8161 3.0998 -5.3144 36 1 -3.4121 3.5064 -4.6069 37 1 -2.0670 4.7970 -6.8551 38 1 -3.6625 5.2018 -6.1496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495322077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:33 Heat of formation + Delta-G solvation = -138.214273 kcal Electronic energy + Delta-G solvation = -20931.086020 eV Core-core repulsion = 17579.818435 eV Total energy + Delta-G solvation = -3351.267584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52971 -40.69953 -38.34483 -37.25359 -36.57818 -34.29339 -33.19545 -32.21912 -30.22033 -28.90692 -26.07212 -24.76863 -24.42046 -22.29405 -21.60891 -21.03337 -19.04486 -18.35648 -18.15644 -17.81680 -17.24333 -17.10734 -16.62749 -16.09612 -15.85146 -15.09059 -15.04411 -14.82927 -14.63867 -14.42653 -14.13054 -13.63034 -13.37906 -13.17367 -13.12792 -13.07834 -12.84804 -12.69211 -12.24254 -12.14818 -12.02076 -11.77483 -11.61929 -11.54442 -11.04170 -10.70761 -10.50728 -9.96037 -9.60009 -8.16013 -6.33105 1.36601 1.44090 1.45204 1.55074 1.59438 1.86992 2.37050 2.56975 2.81013 3.13556 3.40714 3.68179 3.82553 4.03171 4.16018 4.25796 4.48675 4.53402 4.58076 4.61919 4.67378 4.80214 4.80554 4.90825 4.98353 5.09897 5.29978 5.35490 5.47534 5.58700 5.64905 5.82881 5.94539 6.19718 6.34125 6.75657 6.90186 7.00715 7.34366 7.60652 8.89074 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.003779 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.386326 B = 7407.828533 C = 7861.028261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.276 3.724 4 H -0.004 1.004 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.260 1.260 13 N -0.706 5.706 14 C 0.502 3.498 15 O -0.587 6.587 16 C -0.143 4.143 17 C 0.169 3.831 18 N -0.623 5.623 19 C 0.058 3.942 20 C 0.036 3.964 21 O -0.348 6.348 22 C 0.635 3.365 23 O -0.580 6.580 24 H 0.045 0.955 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 1.636 -19.476 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.014 0.986 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.208 1.208 12 H -0.184 1.184 13 N -0.355 5.355 14 C 0.289 3.711 15 O -0.469 6.469 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.370 5.370 19 C -0.063 4.063 20 C -0.037 4.037 21 O -0.258 6.258 22 C 0.390 3.610 23 O -0.469 6.469 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.109 0.891 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.692 2.109 -18.386 21.891 hybrid contribution 1.294 0.018 0.472 1.378 sum -10.398 2.127 -17.914 20.822 Atomic orbital electron populations 1.21676 0.96626 0.99212 1.00477 1.21761 0.94084 0.98831 1.01260 1.18371 0.93442 0.89425 0.81509 0.98584 1.21612 0.91717 1.38803 1.06684 0.91247 1.25742 1.03161 0.94436 0.95080 1.70044 1.36979 1.38418 1.09800 0.85412 0.79368 0.77359 0.78600 1.20717 1.20840 1.18445 1.46282 1.15611 1.55983 1.17611 1.20921 0.81879 0.78343 0.89965 1.90675 1.52460 1.61234 1.42498 1.21950 0.98616 1.01943 0.95939 1.20870 0.94823 0.97360 0.82156 1.48149 1.61427 1.08295 1.19161 1.23277 1.01098 0.97110 0.84836 1.24810 1.02697 0.79772 0.96435 1.87248 1.72856 1.38183 1.27517 1.18746 0.77824 0.83115 0.81343 1.91021 1.49011 1.56298 1.50579 0.93549 0.95765 0.93069 0.93885 0.91306 0.92630 0.76203 0.89082 0.85250 0.87112 0.91917 0.86206 0.86532 0.84841 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.51 71.98 0.61 -4.61 16 2 C -0.12 -5.75 5.45 30.59 0.17 -5.58 16 3 C 0.28 13.93 2.24 44.24 0.10 14.03 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.24 16 5 C -0.55 -29.03 8.73 25.60 0.22 -28.80 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -52.23 11.29 21.45 0.24 -51.99 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.71 -27.90 5.02 -446.09 -2.24 -30.14 16 14 C 0.50 18.36 6.40 87.66 0.56 18.92 16 15 O -0.59 -26.10 13.12 -3.04 -0.04 -26.14 16 16 C -0.14 -3.56 6.02 29.85 0.18 -3.38 16 17 C 0.17 4.11 5.31 86.38 0.46 4.56 16 18 N -0.62 -12.40 2.96 -951.47 -2.82 -15.22 16 19 C 0.06 0.43 7.70 86.64 0.67 1.10 16 20 C 0.04 0.24 8.23 72.35 0.60 0.84 16 21 O -0.35 -7.37 11.09 -47.27 -0.52 -7.89 16 22 C 0.64 17.49 8.85 129.91 1.15 18.64 16 23 O -0.58 -22.46 17.54 19.64 0.34 -22.11 16 24 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.02 1.12 7.85 -2.39 -0.02 1.10 16 26 H 0.05 2.01 5.65 -2.38 -0.01 2.00 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 3.73 5.95 -2.38 -0.01 3.72 16 29 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.40 13.45 8.54 -92.71 -0.79 12.66 16 31 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 34 H 0.06 1.98 7.88 -2.39 -0.02 1.96 16 35 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.13 0.16 8.14 -2.39 -0.02 0.15 16 38 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -78.06 317.32 2.43 -75.63 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.28 Total: 16.60 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 5.16 Total: 17.03 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -4.82 Total: -97.35 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.22 Total: -56.14 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -78.06 2.43 -75.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495322077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.581 kcal (2) G-P(sol) polarization free energy of solvation -78.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds