Wall clock time and date at job start Mon Mar 30 2020 01:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46941 * 2 1 4 4 C 1.53000 * 109.46802 * 239.99639 * 2 1 3 5 5 O 1.45199 * 109.47149 * 119.99849 * 2 1 3 6 6 C 1.34644 * 116.99921 * 59.99884 * 5 2 1 7 7 O 1.21510 * 120.00231 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00147 * 179.97438 * 6 5 2 9 9 C 1.47069 * 136.05309 * 359.94792 * 8 6 5 10 10 C 1.53498 * 87.98330 * 207.15468 * 9 8 6 11 11 C 1.47062 * 136.06209 * 179.97438 * 8 6 5 12 12 H 1.09001 * 113.47186 * 267.68747 * 11 8 6 13 13 C 1.50700 * 113.46417 * 38.06362 * 11 8 6 14 14 O 1.21293 * 120.00282 * 0.49574 * 13 11 8 15 15 N 1.34777 * 120.00075 * 180.49471 * 13 11 8 16 16 C 1.37104 * 120.00173 * 180.02562 * 15 13 11 17 17 H 1.08002 * 119.99666 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00001 * 180.27893 * 16 15 13 19 19 N 1.31407 * 120.00135 * 179.72366 * 18 16 15 20 20 Si 1.86800 * 120.00194 * 359.72088 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99937 * 20 18 16 22 22 H 1.48496 * 109.47530 * 210.00374 * 20 18 16 23 23 H 1.48501 * 109.47312 * 330.00618 * 20 18 16 24 24 H 1.08996 * 109.47284 * 300.00080 * 1 2 3 25 25 H 1.08998 * 109.46937 * 59.99804 * 1 2 3 26 26 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47162 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47465 * 299.99873 * 3 2 1 29 29 H 1.09000 * 109.47779 * 60.00316 * 3 2 1 30 30 H 1.08994 * 109.47741 * 300.00151 * 4 2 1 31 31 H 1.08998 * 109.46920 * 60.00546 * 4 2 1 32 32 H 1.09007 * 109.46725 * 179.97438 * 4 2 1 33 33 H 1.08998 * 113.47102 * 321.93523 * 9 8 6 34 34 H 1.09005 * 113.46611 * 92.31947 * 9 8 6 35 35 H 1.08997 * 114.21031 * 220.34774 * 10 9 8 36 36 H 1.08999 * 114.20227 * 87.52209 * 10 9 8 37 37 H 0.97000 * 120.00140 * 0.02562 * 15 13 11 38 38 H 0.97004 * 120.00486 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5098 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 2.8939 -2.3867 3.6011 10 6 3.2463 -3.8802 3.6402 11 6 1.8960 -4.0344 2.9265 12 1 1.0528 -4.1406 3.6091 13 6 1.9052 -5.0833 1.8445 14 8 2.0547 -4.7580 0.6857 15 7 1.7474 -6.3830 2.1646 16 6 1.7563 -7.3374 1.1803 17 1 1.8894 -7.0477 0.1484 18 6 1.5878 -8.6767 1.5097 19 7 1.5909 -9.5909 0.5658 20 14 1.3568 -9.1778 3.2944 21 1 -0.0903 -9.1706 3.6273 22 1 1.9054 -10.5422 3.5005 23 1 2.0718 -8.2187 4.1743 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 3.7493 -1.7442 3.3923 34 1 2.3171 -2.0531 4.4638 35 1 3.2730 -4.3070 4.6428 36 1 4.1080 -4.1521 3.0306 37 1 1.6274 -6.6432 3.0913 38 1 1.4736 -10.5260 0.7957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495500882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:44 Heat of formation + Delta-G solvation = -65.410058 kcal Electronic energy + Delta-G solvation = -21629.101226 eV Core-core repulsion = 18280.990669 eV Total energy + Delta-G solvation = -3348.110557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67398 -39.45622 -37.30921 -36.06504 -33.91621 -33.77516 -31.62933 -29.53722 -27.38807 -27.23701 -27.14915 -24.29735 -22.97407 -20.93872 -19.76807 -18.95495 -18.39897 -17.42622 -16.59951 -16.26071 -15.48737 -15.09302 -14.83243 -14.30335 -14.03449 -13.84647 -13.57361 -13.08866 -12.94973 -12.63840 -12.44181 -12.38027 -12.11273 -12.02366 -11.78852 -11.71339 -11.58433 -11.24853 -11.20452 -11.04619 -10.94916 -10.56680 -10.11907 -9.93563 -9.59240 -9.47006 -8.74879 -8.18086 -8.11982 -6.27038 -3.78001 2.19447 3.03667 3.09007 3.17138 3.34684 3.65959 4.03246 4.13159 4.43152 4.61747 4.81009 4.83485 4.98997 5.02089 5.18253 5.26177 5.40429 5.43939 5.47221 5.54890 5.58491 5.72094 5.75059 5.79243 5.85040 5.96863 6.00387 6.07706 6.24325 6.41106 6.58975 6.79148 7.59904 8.03553 8.17925 8.62824 8.83583 9.00236 9.45538 9.86759 10.86242 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030757 B = 0.004889 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.148506 B = 5725.324036 C = 6298.967004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.137 4.137 4 C -0.185 4.185 5 O -0.369 6.369 6 C 0.676 3.324 7 O -0.526 6.526 8 N -0.618 5.618 9 C 0.106 3.894 10 C -0.142 4.142 11 C 0.140 3.860 12 H 0.105 0.895 13 C 0.442 3.558 14 O -0.537 6.537 15 N -0.588 5.588 16 C -0.301 4.301 17 H 0.119 0.881 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.268 1.268 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.370 0.630 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 18.050 8.393 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.195 4.195 4 C -0.242 4.242 5 O -0.286 6.286 6 C 0.432 3.568 7 O -0.411 6.411 8 N -0.361 5.361 9 C -0.017 4.017 10 C -0.181 4.181 11 C 0.034 3.966 12 H 0.122 0.878 13 C 0.226 3.774 14 O -0.416 6.416 15 N -0.228 5.228 16 C -0.430 4.430 17 H 0.136 0.864 18 C -0.162 4.162 19 N -0.523 5.523 20 Si 0.706 3.294 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.202 0.798 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.567 18.083 6.959 19.439 hybrid contribution -0.317 -0.579 1.321 1.477 sum 1.250 17.504 8.280 19.404 Atomic orbital electron populations 1.22510 0.94318 1.05232 1.01935 1.21976 0.94161 0.91198 0.82644 1.21830 1.02093 0.92848 1.02693 1.22522 1.01477 1.04167 0.95999 1.86242 1.72315 1.23928 1.46068 1.17181 0.78860 0.79683 0.81116 1.90987 1.39666 1.69199 1.41233 1.47780 1.54990 1.12901 1.20476 1.22921 0.94168 0.97285 0.87319 1.23473 0.97161 0.95804 1.01638 1.22557 0.98772 0.81690 0.93614 0.87785 1.19646 0.85047 0.82999 0.89727 1.90675 1.51540 1.80134 1.19254 1.42134 1.66207 1.05859 1.08646 1.19421 1.46768 0.85542 0.91221 0.86373 1.25026 0.97755 0.95455 0.97953 1.69623 1.49106 1.01358 1.32174 0.86676 0.79041 0.79101 0.84599 1.19660 1.20233 1.19367 0.92528 0.91395 0.89196 0.91648 0.90385 0.91782 0.88651 0.91584 0.92362 0.90164 0.89729 0.88435 0.87966 0.79776 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.37 37.16 0.31 -2.16 16 2 C 0.14 1.92 1.13 -90.62 -0.10 1.82 16 3 C -0.14 -1.38 8.85 37.15 0.33 -1.05 16 4 C -0.18 -2.77 8.37 37.16 0.31 -2.46 16 5 O -0.37 -6.14 9.91 -40.33 -0.40 -6.54 16 6 C 0.68 13.29 7.83 54.05 0.42 13.72 16 7 O -0.53 -12.23 10.50 -26.56 -0.28 -12.51 16 8 N -0.62 -10.72 3.48 -184.63 -0.64 -11.36 16 9 C 0.11 1.23 8.64 -8.51 -0.07 1.15 16 10 C -0.14 -1.76 8.02 -26.21 -0.21 -1.97 16 11 C 0.14 2.38 4.46 -73.54 -0.33 2.05 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.44 10.41 7.26 -10.98 -0.08 10.33 16 14 O -0.54 -15.35 13.84 -16.22 -0.22 -15.58 16 15 N -0.59 -14.15 5.09 -10.96 -0.06 -14.20 16 16 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 17 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 20 Si 0.88 19.28 27.73 -169.99 -4.71 14.57 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.53 5.88 -51.93 -0.31 1.22 16 27 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.84 5.88 -51.93 -0.31 1.54 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.41 8.11 -51.93 -0.42 0.99 16 37 H 0.37 7.64 5.77 -40.82 -0.24 7.40 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -36.61 314.75 -5.94 -42.54 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.47 Total: 10.00 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 0.33 Total: 13.66 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.08 Total: -50.89 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.90 Total: -34.63 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.61 -5.94 -42.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495500882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds