Wall clock time and date at job start Mon Mar 30 2020 01:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46941 * 2 1 4 4 C 1.53000 * 109.46802 * 239.99639 * 2 1 3 5 5 O 1.45199 * 109.47149 * 119.99849 * 2 1 3 6 6 C 1.34644 * 116.99921 * 59.99884 * 5 2 1 7 7 O 1.21510 * 120.00231 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00147 * 179.97438 * 6 5 2 9 9 C 1.47069 * 136.05309 * 359.94792 * 8 6 5 10 10 C 1.53498 * 87.98330 * 207.15468 * 9 8 6 11 11 C 1.47062 * 136.06209 * 179.97438 * 8 6 5 12 12 H 1.09001 * 113.47186 * 267.68747 * 11 8 6 13 13 C 1.50700 * 113.46417 * 38.06362 * 11 8 6 14 14 O 1.21293 * 120.00282 * 0.49574 * 13 11 8 15 15 N 1.34777 * 120.00075 * 180.49471 * 13 11 8 16 16 C 1.37104 * 120.00173 * 180.02562 * 15 13 11 17 17 H 1.08002 * 119.99666 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00001 * 180.27893 * 16 15 13 19 19 N 1.31407 * 120.00135 * 179.72366 * 18 16 15 20 20 Si 1.86800 * 120.00194 * 359.72088 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99937 * 20 18 16 22 22 H 1.48496 * 109.47530 * 210.00374 * 20 18 16 23 23 H 1.48501 * 109.47312 * 330.00618 * 20 18 16 24 24 H 1.08996 * 109.47284 * 300.00080 * 1 2 3 25 25 H 1.08998 * 109.46937 * 59.99804 * 1 2 3 26 26 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47162 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47465 * 299.99873 * 3 2 1 29 29 H 1.09000 * 109.47779 * 60.00316 * 3 2 1 30 30 H 1.08994 * 109.47741 * 300.00151 * 4 2 1 31 31 H 1.08998 * 109.46920 * 60.00546 * 4 2 1 32 32 H 1.09007 * 109.46725 * 179.97438 * 4 2 1 33 33 H 1.08998 * 113.47102 * 321.93523 * 9 8 6 34 34 H 1.09005 * 113.46611 * 92.31947 * 9 8 6 35 35 H 1.08997 * 114.21031 * 220.34774 * 10 9 8 36 36 H 1.08999 * 114.20227 * 87.52209 * 10 9 8 37 37 H 0.97000 * 120.00140 * 0.02562 * 15 13 11 38 38 H 0.97004 * 120.00486 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5098 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 2.8939 -2.3867 3.6011 10 6 3.2463 -3.8802 3.6402 11 6 1.8960 -4.0344 2.9265 12 1 1.0528 -4.1406 3.6091 13 6 1.9052 -5.0833 1.8445 14 8 2.0547 -4.7580 0.6857 15 7 1.7474 -6.3830 2.1646 16 6 1.7563 -7.3374 1.1803 17 1 1.8894 -7.0477 0.1484 18 6 1.5878 -8.6767 1.5097 19 7 1.5909 -9.5909 0.5658 20 14 1.3568 -9.1778 3.2944 21 1 -0.0903 -9.1706 3.6273 22 1 1.9054 -10.5422 3.5005 23 1 2.0718 -8.2187 4.1743 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 3.7493 -1.7442 3.3923 34 1 2.3171 -2.0531 4.4638 35 1 3.2730 -4.3070 4.6428 36 1 4.1080 -4.1521 3.0306 37 1 1.6274 -6.6432 3.0913 38 1 1.4736 -10.5260 0.7957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495500882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:44 Heat of formation + Delta-G solvation = -94.167079 kcal Electronic energy + Delta-G solvation = -21630.348224 eV Core-core repulsion = 18280.990669 eV Total energy + Delta-G solvation = -3349.357555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00795 -40.83389 -39.03629 -37.44843 -35.97757 -34.99196 -33.75521 -30.79972 -28.70012 -28.40136 -28.28008 -26.12831 -24.15774 -22.22197 -21.37306 -20.73732 -19.90951 -18.75755 -18.21342 -17.58640 -17.05631 -16.69337 -16.20055 -15.83163 -15.43792 -15.16102 -14.95750 -14.87883 -14.37933 -14.09890 -13.79353 -13.70487 -13.30655 -13.12871 -12.98279 -12.88128 -12.84006 -12.66016 -12.46700 -12.40872 -12.23787 -12.07125 -11.93000 -11.49763 -11.35364 -10.95830 -10.39505 -10.24251 -9.69986 -8.40879 -6.02701 0.95558 1.31252 1.38630 1.47776 1.89258 1.96887 2.25495 2.76639 2.99941 3.14122 3.36999 3.76290 3.78650 3.93375 3.95917 4.04758 4.23958 4.36061 4.51409 4.57152 4.58850 4.67509 4.72445 4.79730 4.87113 4.92146 4.95096 5.11246 5.24418 5.27524 5.36214 5.53451 5.55496 5.92803 6.56675 6.74901 6.88261 7.36810 7.45730 7.97976 8.77404 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030757 B = 0.004889 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.148506 B = 5725.324036 C = 6298.967004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.128 4.128 4 C -0.181 4.181 5 O -0.364 6.364 6 C 0.663 3.337 7 O -0.577 6.577 8 N -0.634 5.634 9 C 0.114 3.886 10 C -0.124 4.124 11 C 0.134 3.866 12 H 0.147 0.853 13 C 0.435 3.565 14 O -0.599 6.599 15 N -0.583 5.583 16 C -0.329 4.329 17 H 0.044 0.956 18 C -0.017 4.017 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.218 1.218 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.392 0.608 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 20.084 13.134 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.185 4.185 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.419 3.581 7 O -0.466 6.466 8 N -0.378 5.378 9 C -0.006 4.006 10 C -0.162 4.162 11 C 0.028 3.972 12 H 0.164 0.836 13 C 0.221 3.779 14 O -0.482 6.482 15 N -0.226 5.226 16 C -0.458 4.458 17 H 0.062 0.938 18 C -0.215 4.215 19 N -0.579 5.579 20 Si 0.787 3.213 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.141 1.141 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.098 0.902 37 H 0.228 0.772 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.947 20.160 11.753 23.417 hybrid contribution -0.411 -1.182 -0.334 1.295 sum 1.536 18.978 11.419 22.202 Atomic orbital electron populations 1.22440 0.94116 1.03011 1.03850 1.22410 0.94630 0.92955 0.81207 1.21839 1.02331 0.89645 1.04644 1.22462 1.01270 1.01690 0.98369 1.86251 1.72162 1.22498 1.47082 1.17605 0.78634 0.80405 0.81422 1.90973 1.41963 1.70379 1.43275 1.48197 1.55176 1.13052 1.21331 1.23293 0.94236 0.96994 0.86111 1.23530 0.93042 0.96534 1.03070 1.22978 1.03424 0.79067 0.91748 0.83624 1.21085 0.82159 0.83874 0.90749 1.90659 1.53475 1.81286 1.22784 1.41891 1.66632 1.05421 1.08634 1.18933 1.49517 0.87699 0.89656 0.93787 1.26219 0.95917 0.94288 1.05120 1.69824 1.49837 1.02162 1.36044 0.85323 0.80042 0.79512 0.76374 1.18364 1.19941 1.14072 0.91073 0.88936 0.93396 0.91277 0.87835 0.90388 0.93826 0.88821 0.92507 0.88993 0.85273 0.83015 0.90172 0.77166 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.77 8.37 71.98 0.60 -4.17 16 2 C 0.12 3.44 1.13 -10.79 -0.01 3.42 16 3 C -0.13 -2.22 8.85 71.98 0.64 -1.58 16 4 C -0.18 -5.67 8.37 71.98 0.60 -5.07 16 5 O -0.36 -12.02 9.91 -55.53 -0.55 -12.57 16 6 C 0.66 26.74 7.83 129.79 1.02 27.76 16 7 O -0.58 -28.84 10.50 26.77 0.28 -28.56 16 8 N -0.63 -21.18 3.48 -968.45 -3.37 -24.55 16 9 C 0.11 2.13 8.64 83.18 0.72 2.85 16 10 C -0.12 -2.53 8.02 30.93 0.25 -2.28 16 11 C 0.13 4.25 4.46 41.05 0.18 4.43 16 12 H 0.15 3.45 8.14 -2.39 -0.02 3.43 16 13 C 0.43 21.03 7.26 87.66 0.64 21.66 16 14 O -0.60 -36.96 13.84 17.74 0.25 -36.71 16 15 N -0.58 -28.30 5.09 -306.98 -1.56 -29.87 16 16 C -0.33 -20.05 10.16 84.04 0.85 -19.19 16 17 H 0.04 3.26 7.39 -2.91 -0.02 3.24 16 18 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 19 N -0.94 -58.11 13.96 21.66 0.30 -57.81 16 20 Si 0.97 38.52 27.73 68.60 1.90 40.42 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 23 H -0.22 -6.88 6.52 99.48 0.65 -6.23 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.72 5.88 -2.39 -0.01 1.71 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.15 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.85 5.88 -2.39 -0.01 1.83 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 37 H 0.39 15.12 5.77 -92.71 -0.53 14.58 16 38 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -94.17 314.75 3.68 -90.48 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.48 Total: 31.84 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 5.95 Total: 27.33 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.63 Total: -112.22 kcal Atomic # 8 Polarization: -77.82 SS G_CDS: -0.02 Total: -77.85 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -94.17 3.68 -90.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495500882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.683 kcal (2) G-P(sol) polarization free energy of solvation -94.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds