Wall clock time and date at job start Mon Mar 30 2020 00:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48497 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47059 * 300.00145 * 3 2 1 6 6 H 1.48503 * 109.47225 * 60.00182 * 3 2 1 7 7 C 1.37872 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46569 * 180.02562 * 10 9 7 12 12 O 1.21272 * 120.00297 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99472 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99856 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47264 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47250 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.46842 * 180.02562 * 16 15 14 18 18 C 1.47093 * 125.55889 * 90.00569 * 17 16 15 19 19 C 1.54091 * 103.77776 * 180.02562 * 18 17 16 20 20 O 1.45704 * 104.12991 * 359.92869 * 19 18 17 21 21 C 1.34001 * 125.56070 * 270.01636 * 17 16 15 22 22 O 1.21513 * 123.07229 * 0.03827 * 21 17 16 23 23 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46863 * 60.00049 * 9 7 2 25 25 H 1.08996 * 109.46918 * 300.00119 * 9 7 2 26 26 H 1.08996 * 109.47029 * 60.00674 * 10 9 7 27 27 H 1.09000 * 109.46996 * 300.00062 * 10 9 7 28 28 H 0.97003 * 119.99977 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.46610 * 60.00476 * 14 13 11 30 30 H 1.08999 * 109.47538 * 300.00927 * 14 13 11 31 31 H 1.09004 * 109.46910 * 60.00670 * 15 14 13 32 32 H 1.08996 * 109.47399 * 300.00417 * 15 14 13 33 33 H 1.09004 * 109.47022 * 60.00243 * 16 15 14 34 34 H 1.08996 * 109.46855 * 300.00254 * 16 15 14 35 35 H 1.09000 * 110.56724 * 61.43908 * 18 17 16 36 36 H 1.09004 * 110.68940 * 298.64853 * 18 17 16 37 37 H 1.09002 * 110.52360 * 118.62859 * 19 18 17 38 38 H 1.09002 * 110.51975 * 241.22721 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4918 -4.9671 -0.0025 12 8 0.2791 -4.9671 -0.0015 13 7 2.1658 -6.1343 -0.0031 14 6 1.4333 -7.4031 -0.0031 15 6 2.4275 -8.5660 -0.0046 16 6 1.6625 -9.8910 -0.0053 17 7 2.6146 -11.0045 -0.0060 18 6 3.1705 -11.6554 1.1902 19 6 4.1010 -12.7421 0.6177 20 8 3.9737 -12.5947 -0.8263 21 6 3.1212 -11.5959 -1.0965 22 8 2.8341 -11.2581 -2.2279 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8726 -3.6047 0.8877 27 1 2.8713 -3.6038 -0.8923 28 1 3.1358 -6.1343 -0.0028 29 1 0.8063 -7.4605 -0.8930 30 1 0.8069 -7.4611 0.8870 31 1 3.0548 -8.5087 0.8850 32 1 3.0535 -8.5078 -0.8949 33 1 1.0355 -9.9481 -0.8950 34 1 1.0363 -9.9494 0.8849 35 1 2.3761 -12.1059 1.7852 36 1 3.7378 -10.9421 1.7883 37 1 5.1304 -12.5673 0.9304 38 1 3.7702 -13.7323 0.9314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495946728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:38 Heat of formation + Delta-G solvation = -151.313580 kcal Electronic energy + Delta-G solvation = -19748.751223 eV Core-core repulsion = 16396.915610 eV Total energy + Delta-G solvation = -3351.835613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.49354 -40.66315 -38.37777 -37.52629 -35.95502 -35.51912 -33.30719 -32.52319 -30.39616 -28.17704 -26.64893 -24.51776 -23.87165 -22.88143 -21.93776 -21.03324 -18.81056 -18.45288 -18.15779 -17.81600 -17.38080 -16.96508 -16.78672 -16.38617 -16.14706 -15.52071 -15.05281 -15.03491 -14.68453 -14.53857 -14.27319 -14.13073 -13.41338 -13.28356 -13.17972 -13.05972 -12.83558 -12.67459 -12.43343 -12.03377 -11.91588 -11.73700 -11.63163 -11.62061 -11.28035 -10.76830 -10.57699 -10.06039 -9.95901 -8.17860 -6.31819 1.39687 1.42554 1.44004 1.57254 1.58661 1.72864 2.28434 2.45484 2.64573 3.15180 3.38659 3.66166 3.90453 3.94047 4.08449 4.08864 4.18726 4.46610 4.51671 4.53513 4.57239 4.58263 4.72054 4.79273 4.81514 5.04536 5.10899 5.14624 5.37979 5.47014 5.53726 5.64221 5.86299 6.18204 6.31659 6.62000 6.87147 6.90089 7.35884 7.38830 8.95079 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049857 B = 0.002431 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.474663 B =11514.588472 C =11624.655394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.590 6.590 13 N -0.720 5.720 14 C 0.121 3.879 15 C -0.132 4.132 16 C 0.148 3.852 17 N -0.622 5.622 18 C 0.061 3.939 19 C 0.033 3.967 20 O -0.352 6.352 21 C 0.633 3.367 22 O -0.580 6.580 23 H 0.263 0.737 24 H -0.020 1.020 25 H -0.016 1.016 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.416 0.584 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.722 -27.637 7.812 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.160 4.160 11 C 0.298 3.702 12 O -0.469 6.469 13 N -0.373 5.373 14 C -0.004 4.004 15 C -0.171 4.171 16 C 0.027 3.973 17 N -0.369 5.369 18 C -0.060 4.060 19 C -0.040 4.040 20 O -0.263 6.263 21 C 0.388 3.612 22 O -0.468 6.468 23 H 0.071 0.929 24 H -0.001 1.001 25 H 0.003 0.997 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.253 0.747 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.707 -27.552 7.107 30.402 hybrid contribution 0.154 1.007 -0.254 1.050 sum 10.862 -26.545 6.853 29.488 Atomic orbital electron populations 1.70186 1.08313 1.27742 1.51596 1.26157 0.95750 1.04009 0.94701 0.85259 0.79290 0.78054 0.77540 1.17599 1.20756 1.20521 1.21754 0.94009 0.91620 1.50567 0.90585 1.18707 0.93772 0.92546 0.94712 1.21637 0.99305 0.90176 1.04852 1.21322 0.87805 0.86842 0.74204 1.90654 1.16709 1.88434 1.51150 1.45887 1.11022 1.04801 1.75640 1.21219 0.94962 0.82242 1.01929 1.22034 0.98410 0.92614 1.04038 1.21285 0.89197 0.81719 1.05128 1.48126 1.46884 1.35610 1.06292 1.23217 0.99049 0.95862 0.87885 1.24788 1.03617 1.02083 0.73549 1.87342 1.59750 1.49739 1.29428 1.18861 0.78040 0.78754 0.85571 1.91015 1.64805 1.67680 1.23325 0.92861 1.00128 0.99749 0.87482 0.88025 0.74699 0.93288 0.91069 0.88270 0.92100 0.90929 0.85908 0.86266 0.86486 0.85328 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.92 13.29 21.45 0.28 -59.64 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 4 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.26 4.26 29.85 0.13 2.39 16 10 C -0.12 -4.79 5.64 29.85 0.17 -4.62 16 11 C 0.51 19.53 7.83 87.66 0.69 20.21 16 12 O -0.59 -28.92 15.98 -3.01 -0.05 -28.96 16 13 N -0.72 -18.47 5.56 -463.06 -2.57 -21.04 16 14 C 0.12 2.60 5.67 86.38 0.49 3.09 16 15 C -0.13 -1.84 5.65 30.59 0.17 -1.66 16 16 C 0.15 1.85 6.01 86.38 0.52 2.37 16 17 N -0.62 -7.97 2.96 -951.01 -2.82 -10.78 16 18 C 0.06 0.14 7.70 86.64 0.67 0.80 16 19 C 0.03 0.11 8.22 72.35 0.59 0.70 16 20 O -0.35 -6.14 11.11 -50.08 -0.56 -6.70 16 21 C 0.63 13.96 8.85 129.91 1.15 15.11 16 22 O -0.58 -19.02 17.55 19.63 0.34 -18.67 16 23 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 24 H -0.02 -1.26 8.10 -2.38 -0.02 -1.28 16 25 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 26 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 27 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 28 H 0.42 7.65 8.47 -92.71 -0.79 6.86 16 29 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.25 7.93 -2.38 -0.02 1.23 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.12 -0.22 8.14 -2.38 -0.02 -0.24 16 37 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: -1.00 -91.18 329.92 2.20 -88.98 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 0.27 Total: 2.72 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.27 Total: 7.59 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -5.11 Total: -91.46 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.26 Total: -54.33 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -91.18 2.20 -88.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495946728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.338 kcal (2) G-P(sol) polarization free energy of solvation -91.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds