Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 N 1.46497 * 109.46976 * 120.00211 * 2 1 3 5 5 C 1.46501 * 119.99684 * 296.20854 * 4 2 1 6 6 C 1.50698 * 109.47324 * 90.00311 * 5 4 2 7 7 H 1.08002 * 119.99526 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00382 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99794 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00312 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47027 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47544 * 120.00068 * 10 8 6 13 13 H 1.48507 * 109.47056 * 239.99757 * 10 8 6 14 14 C 1.34774 * 120.00510 * 116.48822 * 4 2 1 15 15 O 1.21286 * 119.99370 * 4.14535 * 14 4 2 16 16 C 1.50692 * 120.00288 * 184.15017 * 14 4 2 17 17 H 1.08998 * 110.50591 * 31.68169 * 16 14 4 18 18 N 1.47095 * 110.56553 * 154.42856 * 16 14 4 19 19 C 1.34005 * 108.88144 * 118.57099 * 18 16 14 20 20 O 1.21514 * 123.06584 * 180.02562 * 19 18 16 21 21 O 1.33764 * 113.85881 * 0.02562 * 19 18 16 22 22 C 1.45705 * 109.47591 * 359.97438 * 21 19 18 23 23 H 1.08998 * 110.51717 * 118.63265 * 22 21 19 24 24 C 1.53006 * 110.52088 * 241.37101 * 22 21 19 25 25 H 1.09002 * 109.46902 * 305.27768 * 1 2 3 26 26 H 1.08999 * 109.47143 * 65.27411 * 1 2 3 27 27 H 1.09002 * 109.46942 * 185.26951 * 1 2 3 28 28 H 1.09001 * 109.46770 * 240.00043 * 2 1 3 29 29 H 1.09004 * 109.46935 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46873 * 299.99747 * 3 2 1 31 31 H 1.08994 * 109.47128 * 59.99499 * 3 2 1 32 32 H 1.09003 * 109.47106 * 210.00639 * 5 4 2 33 33 H 1.09002 * 109.47340 * 329.99749 * 5 4 2 34 34 H 0.97002 * 120.00015 * 179.97438 * 9 8 6 35 35 H 0.97005 * 125.55998 * 298.58877 * 18 16 14 36 36 H 1.09002 * 109.46617 * 178.89125 * 24 22 21 37 37 H 1.08997 * 109.46688 * 298.88826 * 24 22 21 38 38 H 1.09000 * 109.47175 * 58.89232 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7342 -0.1435 2.5251 6 6 0.4349 -0.7118 3.0350 7 1 -0.1235 -1.4103 2.4295 8 6 -0.0414 -0.3392 4.2741 9 7 0.6384 0.5118 5.0112 10 14 -1.6515 -1.0442 4.9065 11 1 -2.2167 -1.9725 3.8945 12 1 -1.4062 -1.7808 6.1723 13 1 -2.6120 0.0608 5.1550 14 6 2.7338 -1.8263 1.0738 15 8 3.0376 -2.2359 -0.0266 16 6 3.1561 -2.5870 2.3042 17 1 2.4168 -2.4718 3.0968 18 7 3.3576 -4.0094 1.9883 19 6 4.6353 -4.3311 2.2329 20 8 5.0830 -5.4473 2.0588 21 8 5.3728 -3.3113 2.6861 22 6 4.5436 -2.1170 2.7818 23 1 4.4944 -1.7678 3.8132 24 6 5.0817 -1.0156 1.8662 25 1 -0.3633 0.5935 0.8390 26 1 -0.3633 0.4298 -0.9334 27 1 -0.3633 -1.0233 0.0944 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.5406 -0.4107 3.2081 33 1 1.6562 0.9419 2.4622 34 1 0.3031 0.7742 5.8828 35 1 2.6768 -4.6157 1.6568 36 1 4.4384 -0.1385 1.9362 37 1 6.0932 -0.7499 2.1732 38 1 5.0967 -1.3739 0.8369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496038943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = -111.644262 kcal Electronic energy + Delta-G solvation = -22435.899146 eV Core-core repulsion = 19085.783724 eV Total energy + Delta-G solvation = -3350.115422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67299 -39.30226 -36.98564 -36.06392 -34.40705 -33.15390 -32.22371 -31.02414 -27.47211 -26.82602 -26.61411 -23.37026 -23.14269 -22.07095 -20.85657 -18.47022 -18.04701 -17.12514 -16.74164 -16.37106 -16.08298 -15.24258 -14.97465 -14.55876 -14.44887 -13.98453 -13.66210 -13.39651 -13.04786 -12.89707 -12.55194 -12.32959 -11.96635 -11.85125 -11.69243 -11.67285 -11.35518 -11.12819 -10.99109 -10.85535 -10.60588 -10.50708 -10.44167 -10.12468 -9.87421 -9.79425 -8.85533 -8.70445 -7.97002 -6.36816 -4.44820 2.74083 2.95529 3.01134 3.10157 3.20856 3.23371 3.45468 3.87863 4.17951 4.36321 4.72388 4.95869 5.01190 5.11169 5.33815 5.44694 5.53834 5.64836 5.69045 5.82796 5.88554 5.99309 6.03665 6.19670 6.23102 6.30623 6.54013 6.58793 6.86005 6.95798 6.97347 7.29507 7.46664 7.58062 7.83906 8.05044 8.30905 8.55885 8.71247 9.24355 10.69483 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.007896 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.764308 B = 3545.176596 C = 4418.429116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 C -0.159 4.159 4 N -0.583 5.583 5 C 0.230 3.770 6 C -0.542 4.542 7 H 0.065 0.935 8 C 0.068 3.932 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.515 3.485 15 O -0.559 6.559 16 C 0.076 3.924 17 H 0.145 0.855 18 N -0.709 5.709 19 C 0.652 3.348 20 O -0.535 6.535 21 O -0.326 6.326 22 C 0.086 3.914 23 H 0.129 0.871 24 C -0.173 4.173 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.436 0.564 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 1.866 -3.976 4.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 C -0.217 4.217 4 N -0.314 5.314 5 C 0.110 3.890 6 C -0.580 4.580 7 H 0.083 0.917 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.301 3.699 15 O -0.439 6.439 16 C -0.033 4.033 17 H 0.162 0.838 18 N -0.380 5.380 19 C 0.405 3.595 20 O -0.421 6.421 21 O -0.236 6.236 22 C 0.030 3.970 23 H 0.146 0.854 24 C -0.230 4.230 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.279 0.721 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.896 1.330 -4.324 5.371 hybrid contribution -1.576 -0.369 0.462 1.683 sum 1.320 0.961 -3.862 4.193 Atomic orbital electron populations 1.22097 0.94746 1.02600 1.01613 1.20899 0.94571 0.92633 0.88586 1.22133 1.00908 0.96250 1.02431 1.48317 1.50492 1.23169 1.09402 1.19543 0.96758 0.95980 0.76728 1.21519 1.06643 1.27696 1.02149 0.91725 1.24932 0.97425 0.94735 0.96522 1.69907 1.38572 1.32198 1.11775 0.86503 0.83332 0.79105 0.78972 1.19635 1.20769 1.20797 1.20145 0.78564 0.81555 0.89682 1.90653 1.57219 1.68635 1.27372 1.22644 0.99931 0.81844 0.98898 0.83783 1.45666 1.11463 1.10801 1.70072 1.18403 0.80577 0.84363 0.76190 1.91030 1.74859 1.18072 1.58141 1.87263 1.37083 1.20016 1.79250 1.23792 0.85712 0.84627 1.02877 0.85375 1.22311 1.02908 0.97600 1.00178 0.90593 0.93214 0.92748 0.89555 0.92904 0.92180 0.91341 0.94694 0.93604 0.92373 0.72136 0.89149 0.90500 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.40 37.16 0.31 -2.10 16 2 C 0.14 2.20 3.25 -67.93 -0.22 1.98 16 3 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 4 N -0.58 -10.28 2.06 -167.47 -0.34 -10.63 16 5 C 0.23 4.50 3.88 -5.19 -0.02 4.48 16 6 C -0.54 -12.02 7.33 -34.44 -0.25 -12.27 16 7 H 0.06 1.48 7.52 -52.49 -0.39 1.08 16 8 C 0.07 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.89 -21.77 13.29 55.43 0.74 -21.03 16 10 Si 0.89 18.78 29.54 -169.99 -5.02 13.76 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 C 0.52 9.29 4.79 -10.99 -0.05 9.23 16 15 O -0.56 -11.36 15.31 5.55 0.09 -11.27 16 16 C 0.08 1.25 3.18 -68.19 -0.22 1.04 16 17 H 0.14 2.45 6.44 -51.93 -0.33 2.12 16 18 N -0.71 -11.77 5.72 -59.36 -0.34 -12.11 16 19 C 0.65 12.17 9.16 53.71 0.49 12.67 16 20 O -0.53 -11.46 18.04 -19.12 -0.34 -11.80 16 21 O -0.33 -5.65 10.80 -37.81 -0.41 -6.06 16 22 C 0.09 1.30 3.93 -26.16 -0.10 1.19 16 23 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 24 C -0.17 -2.43 8.48 37.16 0.32 -2.11 16 25 H 0.08 1.32 7.30 -51.93 -0.38 0.94 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.09 1.45 6.91 -51.93 -0.36 1.09 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.02 6.55 -51.93 -0.34 0.68 16 32 H 0.04 0.69 6.00 -51.93 -0.31 0.38 16 33 H 0.05 0.96 6.24 -51.93 -0.32 0.63 16 34 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 35 H 0.44 6.53 8.96 -40.82 -0.37 6.16 16 36 H 0.09 1.26 6.74 -51.93 -0.35 0.91 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.20 6.84 -51.93 -0.36 0.84 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -27.73 309.59 -5.66 -33.39 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.18 Total: 7.36 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 0.49 Total: 13.73 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.05 Total: -43.77 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.67 Total: -29.13 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.73 -5.66 -33.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496038943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.258 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds