Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 N 1.46497 * 109.46976 * 120.00211 * 2 1 3 5 5 C 1.46501 * 119.99684 * 296.20854 * 4 2 1 6 6 C 1.50698 * 109.47324 * 90.00311 * 5 4 2 7 7 H 1.08002 * 119.99526 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00382 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99794 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00312 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47027 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47544 * 120.00068 * 10 8 6 13 13 H 1.48507 * 109.47056 * 239.99757 * 10 8 6 14 14 C 1.34774 * 120.00510 * 116.48822 * 4 2 1 15 15 O 1.21286 * 119.99370 * 4.14535 * 14 4 2 16 16 C 1.50692 * 120.00288 * 184.15017 * 14 4 2 17 17 H 1.08998 * 110.50591 * 31.68169 * 16 14 4 18 18 N 1.47095 * 110.56553 * 154.42856 * 16 14 4 19 19 C 1.34005 * 108.88144 * 118.57099 * 18 16 14 20 20 O 1.21514 * 123.06584 * 180.02562 * 19 18 16 21 21 O 1.33764 * 113.85881 * 0.02562 * 19 18 16 22 22 C 1.45705 * 109.47591 * 359.97438 * 21 19 18 23 23 H 1.08998 * 110.51717 * 118.63265 * 22 21 19 24 24 C 1.53006 * 110.52088 * 241.37101 * 22 21 19 25 25 H 1.09002 * 109.46902 * 305.27768 * 1 2 3 26 26 H 1.08999 * 109.47143 * 65.27411 * 1 2 3 27 27 H 1.09002 * 109.46942 * 185.26951 * 1 2 3 28 28 H 1.09001 * 109.46770 * 240.00043 * 2 1 3 29 29 H 1.09004 * 109.46935 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46873 * 299.99747 * 3 2 1 31 31 H 1.08994 * 109.47128 * 59.99499 * 3 2 1 32 32 H 1.09003 * 109.47106 * 210.00639 * 5 4 2 33 33 H 1.09002 * 109.47340 * 329.99749 * 5 4 2 34 34 H 0.97002 * 120.00015 * 179.97438 * 9 8 6 35 35 H 0.97005 * 125.55998 * 298.58877 * 18 16 14 36 36 H 1.09002 * 109.46617 * 178.89125 * 24 22 21 37 37 H 1.08997 * 109.46688 * 298.88826 * 24 22 21 38 38 H 1.09000 * 109.47175 * 58.89232 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7342 -0.1435 2.5251 6 6 0.4349 -0.7118 3.0350 7 1 -0.1235 -1.4103 2.4295 8 6 -0.0414 -0.3392 4.2741 9 7 0.6384 0.5118 5.0112 10 14 -1.6515 -1.0442 4.9065 11 1 -2.2167 -1.9725 3.8945 12 1 -1.4062 -1.7808 6.1723 13 1 -2.6120 0.0608 5.1550 14 6 2.7338 -1.8263 1.0738 15 8 3.0376 -2.2359 -0.0266 16 6 3.1561 -2.5870 2.3042 17 1 2.4168 -2.4718 3.0968 18 7 3.3576 -4.0094 1.9883 19 6 4.6353 -4.3311 2.2329 20 8 5.0830 -5.4473 2.0588 21 8 5.3728 -3.3113 2.6861 22 6 4.5436 -2.1170 2.7818 23 1 4.4944 -1.7678 3.8132 24 6 5.0817 -1.0156 1.8662 25 1 -0.3633 0.5935 0.8390 26 1 -0.3633 0.4298 -0.9334 27 1 -0.3633 -1.0233 0.0944 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.5406 -0.4107 3.2081 33 1 1.6562 0.9419 2.4622 34 1 0.3031 0.7742 5.8828 35 1 2.6768 -4.6157 1.6568 36 1 4.4384 -0.1385 1.9362 37 1 6.0932 -0.7499 2.1732 38 1 5.0967 -1.3739 0.8369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496038943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = -130.066272 kcal Electronic energy + Delta-G solvation = -22436.697984 eV Core-core repulsion = 19085.783724 eV Total energy + Delta-G solvation = -3350.914260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.06711 -40.76562 -38.48135 -37.52285 -35.82504 -34.81029 -33.63038 -32.35936 -29.14461 -28.08697 -27.88335 -24.94832 -24.55818 -23.47447 -22.18686 -19.90749 -19.41980 -18.66800 -18.38057 -17.80321 -17.50384 -16.76865 -16.40903 -16.18341 -15.83131 -15.37170 -14.95846 -14.74070 -14.47939 -14.31827 -14.07111 -13.62666 -13.36266 -13.26843 -13.11840 -12.89355 -12.76661 -12.62929 -12.50361 -12.23039 -12.08453 -12.01647 -11.89629 -11.60197 -11.41583 -11.34514 -10.56392 -10.22534 -9.48353 -8.15922 -6.26472 1.30890 1.42173 1.49331 1.51486 1.56053 1.62035 2.07639 2.42253 2.55321 3.05809 3.16586 3.36493 3.74333 3.83044 4.08046 4.18498 4.29554 4.36112 4.46188 4.66425 4.72160 4.73287 4.86622 4.95681 5.05227 5.05604 5.16437 5.23757 5.47204 5.52739 5.61673 5.73337 5.86161 6.06269 6.11454 6.53675 6.84124 6.89051 7.19443 7.45219 8.89172 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.007896 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.764308 B = 3545.176596 C = 4418.429116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.129 3.871 3 C -0.151 4.151 4 N -0.580 5.580 5 C 0.242 3.758 6 C -0.536 4.536 7 H 0.055 0.945 8 C 0.032 3.968 9 N -0.912 5.912 10 Si 0.939 3.061 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.285 1.285 14 C 0.517 3.483 15 O -0.582 6.582 16 C 0.077 3.923 17 H 0.143 0.857 18 N -0.700 5.700 19 C 0.651 3.349 20 O -0.567 6.567 21 O -0.329 6.329 22 C 0.085 3.915 23 H 0.154 0.846 24 C -0.166 4.166 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.442 0.558 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 2.596 -4.132 5.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 C -0.209 4.209 4 N -0.310 5.310 5 C 0.122 3.878 6 C -0.574 4.574 7 H 0.074 0.926 8 C -0.169 4.169 9 N -0.551 5.551 10 Si 0.767 3.233 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.211 1.211 14 C 0.303 3.697 15 O -0.463 6.463 16 C -0.032 4.032 17 H 0.160 0.840 18 N -0.371 5.371 19 C 0.405 3.595 20 O -0.456 6.456 21 O -0.239 6.239 22 C 0.029 3.971 23 H 0.172 0.828 24 C -0.223 4.223 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.286 0.714 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.801 2.079 -4.488 5.684 hybrid contribution -1.581 -0.560 0.456 1.738 sum 1.220 1.519 -4.032 4.478 Atomic orbital electron populations 1.22019 0.94476 1.01385 1.02407 1.21099 0.94782 0.93833 0.87644 1.22060 1.01130 0.94557 1.03117 1.48301 1.50209 1.23164 1.09315 1.19283 0.95768 0.95249 0.77502 1.21668 1.07268 1.26815 1.01689 0.92633 1.25408 0.99338 0.95192 0.96997 1.69963 1.39651 1.33376 1.12083 0.85790 0.80993 0.78293 0.78254 1.19790 1.20943 1.21121 1.20314 0.78167 0.81444 0.89730 1.90646 1.58144 1.69176 1.28364 1.22667 1.00927 0.81510 0.98068 0.83975 1.45635 1.11045 1.11029 1.69346 1.18460 0.80916 0.84204 0.75969 1.91001 1.75517 1.19476 1.59596 1.87249 1.37390 1.20326 1.78928 1.24103 0.84380 0.84036 1.04545 0.82838 1.22269 1.04382 0.96977 0.98698 0.92298 0.90362 0.94415 0.90017 0.92492 0.89698 0.92403 0.94253 0.94427 0.92475 0.71421 0.88912 0.88122 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.40 71.98 0.60 -3.77 16 2 C 0.13 3.98 3.25 44.99 0.15 4.12 16 3 C -0.15 -3.87 9.10 71.98 0.65 -3.22 16 4 N -0.58 -19.79 2.06 -802.14 -1.65 -21.44 16 5 C 0.24 9.22 3.88 85.63 0.33 9.55 16 6 C -0.54 -23.26 7.33 25.60 0.19 -23.08 16 7 H 0.06 2.50 7.52 -2.91 -0.02 2.47 16 8 C 0.03 1.46 5.46 84.65 0.46 1.92 16 9 N -0.91 -43.93 13.29 21.45 0.28 -43.64 16 10 Si 0.94 37.92 29.54 68.60 2.03 39.94 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 14 C 0.52 18.11 4.79 87.65 0.42 18.53 16 15 O -0.58 -23.19 15.31 -3.05 -0.05 -23.23 16 16 C 0.08 2.46 3.18 44.50 0.14 2.60 16 17 H 0.14 4.64 6.44 -2.39 -0.02 4.63 16 18 N -0.70 -22.69 5.72 -573.43 -3.28 -25.96 16 19 C 0.65 23.88 9.16 129.91 1.19 25.07 16 20 O -0.57 -24.20 18.04 19.64 0.35 -23.85 16 21 O -0.33 -10.97 10.80 -47.25 -0.51 -11.48 16 22 C 0.08 2.39 3.93 30.96 0.12 2.51 16 23 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 24 C -0.17 -4.34 8.48 71.98 0.61 -3.73 16 25 H 0.06 1.98 7.30 -2.39 -0.02 1.96 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.24 8.07 -2.39 -0.02 1.22 16 28 H 0.08 2.63 6.91 -2.39 -0.02 2.62 16 29 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.62 6.55 -2.39 -0.02 1.61 16 32 H 0.04 1.48 6.00 -2.39 -0.01 1.47 16 33 H 0.04 1.53 6.24 -2.39 -0.01 1.52 16 34 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 35 H 0.44 12.98 8.96 -92.70 -0.83 12.15 16 36 H 0.09 2.39 6.74 -2.39 -0.02 2.37 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.67 6.84 -2.39 -0.02 1.66 16 Total: -1.00 -57.35 309.59 2.31 -55.04 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.25 Total: 24.09 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 4.87 Total: 30.53 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -4.64 Total: -91.05 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -0.20 Total: -58.56 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.94 kcal Total: -57.35 2.31 -55.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496038943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.024 kcal (2) G-P(sol) polarization free energy of solvation -57.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds