Wall clock time and date at job start Mon Mar 30 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.57248 * 2 1 4 4 O 1.46039 * 110.56829 * 122.88593 * 2 1 3 5 5 C 1.33763 * 109.51022 * 118.67966 * 4 2 1 6 6 O 1.21517 * 123.07104 * 179.87983 * 5 4 2 7 7 N 1.34002 * 113.86122 * 359.92054 * 5 4 2 8 8 C 1.47088 * 108.87885 * 359.97438 * 7 5 4 9 9 H 1.09002 * 110.56497 * 118.72079 * 8 7 5 10 10 C 1.50703 * 110.56940 * 241.42963 * 8 7 5 11 11 O 1.21283 * 119.99488 * 16.55570 * 10 8 7 12 12 N 1.34777 * 120.00290 * 196.56010 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53010 * 109.47146 * 299.99645 * 14 13 12 16 16 C 1.53000 * 109.47166 * 59.99736 * 14 13 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99965 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99545 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 119.99932 * 21 19 17 24 24 H 1.48498 * 109.47127 * 239.99826 * 21 19 17 25 25 H 1.08999 * 109.47016 * 182.70598 * 1 2 3 26 26 H 1.08994 * 109.47169 * 302.70023 * 1 2 3 27 27 H 1.08993 * 109.47530 * 62.70251 * 1 2 3 28 28 H 0.97001 * 125.56106 * 179.97438 * 7 5 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 30 30 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 31 31 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 32 32 H 1.09003 * 109.46863 * 59.99870 * 15 14 13 33 33 H 1.09001 * 109.47172 * 179.97438 * 15 14 13 34 34 H 1.09000 * 109.46753 * 300.00454 * 15 14 13 35 35 H 1.08990 * 109.47258 * 60.00092 * 16 14 13 36 36 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 37 37 H 1.08999 * 109.47407 * 299.99599 * 16 14 13 38 38 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 8 2.0431 -0.7424 1.1482 5 6 2.7665 -1.7830 0.7203 6 8 3.3113 -2.5661 1.4730 7 7 2.8364 -1.8825 -0.6142 8 6 2.0697 -0.7800 -1.2144 9 1 2.7193 -0.1461 -1.8180 10 6 0.9340 -1.3167 -2.0470 11 8 0.5740 -2.4670 -1.9119 12 7 0.3184 -0.5186 -2.9417 13 6 -0.7896 -1.0386 -3.7467 14 6 -1.3108 0.0644 -4.6701 15 6 -1.8016 1.2443 -3.8287 16 6 -0.1839 0.5306 -5.5941 17 6 -2.4501 -0.4707 -5.4986 18 1 -2.7703 -1.4952 -5.3789 19 6 -3.0839 0.3476 -6.4095 20 7 -2.6944 1.5953 -6.5549 21 14 -4.4957 -0.3160 -7.4370 22 1 -4.7381 -1.7382 -7.0854 23 1 -5.7216 0.4766 -7.1644 24 1 -4.1503 -0.2136 -8.8776 25 1 -0.3633 -1.0265 0.0485 26 1 -0.3633 0.5552 0.8647 27 1 -0.3634 0.4713 -0.9131 28 1 3.3146 -2.5695 -1.1044 29 1 0.6061 0.4015 -3.0494 30 1 -0.4400 -1.8792 -4.3461 31 1 -1.5924 -1.3708 -3.0885 32 1 -0.9772 1.6312 -3.2297 33 1 -2.1725 2.0303 -4.4865 34 1 -2.6043 0.9120 -3.1704 35 1 0.1657 -0.3098 -6.1934 36 1 -0.5552 1.3168 -6.2516 37 1 0.6404 0.9177 -4.9951 38 1 -3.1405 2.1711 -7.1955 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496048249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:14 Heat of formation + Delta-G solvation = -111.492560 kcal Electronic energy + Delta-G solvation = -21636.520659 eV Core-core repulsion = 18286.411815 eV Total energy + Delta-G solvation = -3350.108844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.02879 -39.40471 -37.33372 -36.57054 -34.73919 -33.65683 -32.19546 -30.88809 -27.47883 -25.87791 -25.68736 -24.94389 -23.14438 -22.44267 -20.44897 -19.02512 -18.37876 -17.76001 -16.78055 -16.28676 -15.80032 -15.70952 -15.23984 -14.74934 -14.67765 -14.30857 -13.85407 -13.50104 -13.28630 -13.01589 -12.65222 -12.36409 -12.28270 -11.82467 -11.49323 -11.33020 -11.00786 -10.97993 -10.82025 -10.75205 -10.53348 -10.37242 -10.23800 -9.78569 -9.58328 -9.24490 -8.90784 -8.67828 -8.47046 -6.12946 -4.23184 2.39468 2.51662 2.62736 3.07523 3.20518 3.29912 3.34103 3.52214 3.82956 4.30481 4.39309 4.45001 4.68171 4.95079 5.06674 5.14584 5.48710 5.52763 5.95360 6.03340 6.14963 6.34090 6.56068 6.58469 6.65702 6.74295 6.78569 6.86319 7.06275 7.20259 7.41584 7.58101 7.71860 7.87982 7.93949 8.00796 8.23800 8.34602 8.77522 9.43619 10.88448 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.004153 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.481734 B = 6740.055067 C = 6881.949116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H 0.129 0.871 4 O -0.323 6.323 5 C 0.652 3.348 6 O -0.525 6.525 7 N -0.709 5.709 8 C 0.074 3.926 9 H 0.124 0.876 10 C 0.500 3.500 11 O -0.531 6.531 12 N -0.710 5.710 13 C 0.131 3.869 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.439 0.561 29 H 0.400 0.600 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.006 0.994 33 H 0.086 0.914 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.006 0.994 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.259 2.589 7.152 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.146 0.854 4 O -0.233 6.233 5 C 0.404 3.596 6 O -0.410 6.410 7 N -0.381 5.381 8 C -0.037 4.037 9 H 0.142 0.858 10 C 0.282 3.718 11 O -0.407 6.407 12 N -0.361 5.361 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.546 4.546 18 H 0.076 0.924 19 C -0.134 4.134 20 N -0.523 5.523 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.282 0.718 29 H 0.236 0.764 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.025 0.975 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.025 0.975 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.072 1.704 7.854 11.391 hybrid contribution -0.465 -0.136 -1.165 1.262 sum 7.607 1.568 6.689 10.250 Atomic orbital electron populations 1.22368 0.91214 1.04961 1.04926 1.23888 0.97178 0.95978 0.80110 0.85373 1.87368 1.63694 1.39289 1.32980 1.18406 0.78087 0.80624 0.82464 1.91072 1.49507 1.42258 1.58143 1.45634 1.54569 1.31913 1.05976 1.22515 0.94571 0.90052 0.96545 0.85828 1.20262 0.83709 0.86792 0.80992 1.90750 1.64864 1.17636 1.67477 1.46384 1.35782 1.15091 1.38857 1.21811 0.86186 0.98396 0.92700 1.18375 0.94010 0.90705 0.91407 1.21850 0.97407 1.01200 0.98452 1.21841 0.95555 1.01541 0.99971 1.20994 1.15384 0.97760 1.20458 0.92377 1.24866 0.97017 0.94819 0.96712 1.69797 1.41205 1.05654 1.35686 0.86517 0.82140 0.79223 0.80036 1.19755 1.21013 1.21025 0.90646 0.90047 0.88600 0.71761 0.76449 0.92436 0.92370 0.97536 0.89489 0.95313 0.95390 0.89520 0.97533 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.47 37.16 0.31 -1.53 16 2 C 0.08 0.80 4.52 -26.16 -0.12 0.68 16 3 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 4 O -0.32 -4.26 10.81 -37.81 -0.41 -4.67 16 5 C 0.65 9.57 9.16 53.71 0.49 10.06 16 6 O -0.52 -9.56 18.04 -19.12 -0.35 -9.91 16 7 N -0.71 -8.33 5.64 -59.36 -0.33 -8.67 16 8 C 0.07 0.74 4.16 -68.19 -0.28 0.46 16 9 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 10 C 0.50 6.94 5.05 -10.98 -0.06 6.89 16 11 O -0.53 -9.70 16.45 5.55 0.09 -9.61 16 12 N -0.71 -9.93 3.84 -60.30 -0.23 -10.16 16 13 C 0.13 2.41 4.50 -4.04 -0.02 2.39 16 14 C 0.06 1.15 0.50 -155.66 -0.08 1.07 16 15 C -0.13 -2.60 8.08 37.16 0.30 -2.30 16 16 C -0.13 -2.64 8.08 37.16 0.30 -2.34 16 17 C -0.51 -12.37 8.01 -34.44 -0.28 -12.65 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.07 1.67 5.15 -17.82 -0.09 1.58 16 20 N -0.88 -22.18 9.35 55.43 0.52 -21.66 16 21 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.07 1.00 7.46 -51.93 -0.39 0.61 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 0.98 6.71 -51.93 -0.35 0.63 16 28 H 0.44 4.58 8.96 -40.82 -0.37 4.21 16 29 H 0.40 4.73 6.16 -40.82 -0.25 4.47 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.09 1.97 6.07 -51.93 -0.32 1.66 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.98 6.07 -51.93 -0.32 1.67 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -30.23 308.89 -5.79 -36.01 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.20 Total: 4.93 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 0.48 Total: 4.31 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.05 Total: -40.49 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.66 Total: -24.19 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.23 -5.79 -36.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.478 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds