Wall clock time and date at job start Mon Mar 30 2020 02:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.57248 * 2 1 4 4 O 1.46039 * 110.56829 * 122.88593 * 2 1 3 5 5 C 1.33763 * 109.51022 * 118.67966 * 4 2 1 6 6 O 1.21517 * 123.07104 * 179.87983 * 5 4 2 7 7 N 1.34002 * 113.86122 * 359.92054 * 5 4 2 8 8 C 1.47088 * 108.87885 * 359.97438 * 7 5 4 9 9 H 1.09002 * 110.56497 * 118.72079 * 8 7 5 10 10 C 1.50703 * 110.56940 * 241.42963 * 8 7 5 11 11 O 1.21283 * 119.99488 * 16.55570 * 10 8 7 12 12 N 1.34777 * 120.00290 * 196.56010 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53010 * 109.47146 * 299.99645 * 14 13 12 16 16 C 1.53000 * 109.47166 * 59.99736 * 14 13 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99965 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99545 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 119.99932 * 21 19 17 24 24 H 1.48498 * 109.47127 * 239.99826 * 21 19 17 25 25 H 1.08999 * 109.47016 * 182.70598 * 1 2 3 26 26 H 1.08994 * 109.47169 * 302.70023 * 1 2 3 27 27 H 1.08993 * 109.47530 * 62.70251 * 1 2 3 28 28 H 0.97001 * 125.56106 * 179.97438 * 7 5 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 30 30 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 31 31 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 32 32 H 1.09003 * 109.46863 * 59.99870 * 15 14 13 33 33 H 1.09001 * 109.47172 * 179.97438 * 15 14 13 34 34 H 1.09000 * 109.46753 * 300.00454 * 15 14 13 35 35 H 1.08990 * 109.47258 * 60.00092 * 16 14 13 36 36 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 37 37 H 1.08999 * 109.47407 * 299.99599 * 16 14 13 38 38 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 8 2.0431 -0.7424 1.1482 5 6 2.7665 -1.7830 0.7203 6 8 3.3113 -2.5661 1.4730 7 7 2.8364 -1.8825 -0.6142 8 6 2.0697 -0.7800 -1.2144 9 1 2.7193 -0.1461 -1.8180 10 6 0.9340 -1.3167 -2.0470 11 8 0.5740 -2.4670 -1.9119 12 7 0.3184 -0.5186 -2.9417 13 6 -0.7896 -1.0386 -3.7467 14 6 -1.3108 0.0644 -4.6701 15 6 -1.8016 1.2443 -3.8287 16 6 -0.1839 0.5306 -5.5941 17 6 -2.4501 -0.4707 -5.4986 18 1 -2.7703 -1.4952 -5.3789 19 6 -3.0839 0.3476 -6.4095 20 7 -2.6944 1.5953 -6.5549 21 14 -4.4957 -0.3160 -7.4370 22 1 -4.7381 -1.7382 -7.0854 23 1 -5.7216 0.4766 -7.1644 24 1 -4.1503 -0.2136 -8.8776 25 1 -0.3633 -1.0265 0.0485 26 1 -0.3633 0.5552 0.8647 27 1 -0.3634 0.4713 -0.9131 28 1 3.3146 -2.5695 -1.1044 29 1 0.6061 0.4015 -3.0494 30 1 -0.4400 -1.8792 -4.3461 31 1 -1.5924 -1.3708 -3.0885 32 1 -0.9772 1.6312 -3.2297 33 1 -2.1725 2.0303 -4.4865 34 1 -2.6043 0.9120 -3.1704 35 1 0.1657 -0.3098 -6.1934 36 1 -0.5552 1.3168 -6.2516 37 1 0.6404 0.9177 -4.9951 38 1 -3.1405 2.1711 -7.1955 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496048249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:13 Heat of formation + Delta-G solvation = -134.337801 kcal Electronic energy + Delta-G solvation = -21637.511303 eV Core-core repulsion = 18286.411815 eV Total energy + Delta-G solvation = -3351.099488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.01827 -40.63660 -38.51893 -38.07352 -35.74201 -35.12442 -33.34095 -32.39195 -28.52920 -27.48610 -27.34294 -26.41876 -24.15990 -23.44324 -21.62953 -20.61223 -19.31776 -18.96703 -17.79877 -17.76085 -17.18971 -16.89463 -16.59296 -16.29447 -15.71783 -15.41113 -15.02340 -14.81354 -14.67082 -14.38642 -13.94885 -13.76404 -13.30455 -13.08150 -13.04941 -12.68119 -12.59149 -12.55214 -12.20183 -12.12706 -12.03382 -11.92047 -11.47236 -11.42417 -11.18395 -10.66337 -10.36844 -10.33478 -9.96591 -8.00783 -6.15109 1.34542 1.41292 1.44207 1.47385 1.54851 1.62647 2.06099 2.46319 2.56835 2.99965 3.23729 3.44078 3.72489 3.85842 4.19735 4.24016 4.47151 4.55658 4.68383 4.74670 4.78526 5.04109 5.11234 5.14131 5.17746 5.26703 5.37158 5.60392 5.64490 5.71526 5.74738 6.07429 6.23994 6.27822 6.48044 6.57117 6.89522 6.90266 7.21490 7.52870 8.97460 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.004153 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.481734 B = 6740.055067 C = 6881.949116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H 0.184 0.816 4 O -0.334 6.334 5 C 0.649 3.351 6 O -0.571 6.571 7 N -0.700 5.700 8 C 0.081 3.919 9 H 0.180 0.820 10 C 0.503 3.497 11 O -0.579 6.579 12 N -0.697 5.697 13 C 0.149 3.851 14 C 0.051 3.949 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.527 4.527 18 H 0.040 0.960 19 C 0.032 3.968 20 N -0.895 5.895 21 Si 0.937 3.063 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.444 0.556 29 H 0.416 0.584 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.018 0.982 35 H 0.015 0.985 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.579 4.400 7.448 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.201 0.799 4 O -0.244 6.244 5 C 0.402 3.598 6 O -0.460 6.460 7 N -0.372 5.372 8 C -0.028 4.028 9 H 0.197 0.803 10 C 0.288 3.712 11 O -0.458 6.458 12 N -0.349 5.349 13 C 0.025 3.975 14 C 0.050 3.950 15 C -0.180 4.180 16 C -0.180 4.180 17 C -0.566 4.566 18 H 0.059 0.941 19 C -0.168 4.168 20 N -0.534 5.534 21 Si 0.765 3.235 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.057 0.943 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.288 0.712 29 H 0.254 0.746 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.395 3.562 8.126 12.922 hybrid contribution -0.938 -0.704 -1.274 1.732 sum 8.457 2.859 6.852 11.254 Atomic orbital electron populations 1.22371 0.92253 1.02911 1.05956 1.24388 0.96440 0.97828 0.78365 0.79868 1.87351 1.63329 1.39050 1.34679 1.18532 0.77832 0.80511 0.82908 1.91030 1.51517 1.44014 1.59404 1.45650 1.53884 1.32459 1.05165 1.22796 0.93526 0.89737 0.96720 0.80269 1.20928 0.83924 0.85937 0.80416 1.90747 1.66333 1.19997 1.68744 1.46073 1.34657 1.15819 1.38379 1.21267 0.86968 0.97054 0.92167 1.18370 0.93317 0.91576 0.91732 1.21684 0.98569 0.99741 0.97979 1.21683 0.96376 1.00200 0.99744 1.21311 1.16831 0.97136 1.21293 0.94118 1.25344 0.98605 0.95203 0.97637 1.69893 1.41659 1.05941 1.35910 0.85837 0.80388 0.78364 0.78960 1.20310 1.20893 1.20934 0.94285 0.88478 0.88053 0.71173 0.74574 0.94385 0.94201 0.93281 0.92241 0.96275 0.96543 0.92203 0.93483 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.47 71.98 0.61 -2.57 16 2 C 0.08 1.23 4.52 30.96 0.14 1.37 16 3 H 0.18 0.80 8.14 -2.39 -0.02 0.78 16 4 O -0.33 -7.99 10.81 -47.23 -0.51 -8.50 16 5 C 0.65 18.14 9.16 129.91 1.19 19.33 16 6 O -0.57 -20.79 18.04 19.63 0.35 -20.44 16 7 N -0.70 -14.80 5.64 -573.42 -3.23 -18.04 16 8 C 0.08 1.30 4.16 44.50 0.19 1.48 16 9 H 0.18 1.03 8.14 -2.39 -0.02 1.01 16 10 C 0.50 12.73 5.05 87.66 0.44 13.17 16 11 O -0.58 -20.86 16.45 -3.04 -0.05 -20.91 16 12 N -0.70 -17.46 3.84 -463.07 -1.78 -19.24 16 13 C 0.15 5.37 4.50 86.38 0.39 5.76 16 14 C 0.05 2.05 0.50 -52.93 -0.03 2.02 16 15 C -0.12 -4.60 8.08 71.99 0.58 -4.01 16 16 C -0.12 -4.70 8.08 71.98 0.58 -4.11 16 17 C -0.53 -25.92 8.01 25.60 0.21 -25.72 16 18 H 0.04 2.08 7.74 -2.91 -0.02 2.06 16 19 C 0.03 1.60 5.15 84.65 0.44 2.03 16 20 N -0.90 -44.72 9.35 21.45 0.20 -44.52 16 21 Si 0.94 40.82 29.54 68.60 2.03 42.84 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H 0.04 0.99 7.46 -2.39 -0.02 0.97 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 1.70 6.71 -2.39 -0.02 1.69 16 28 H 0.44 8.45 8.96 -92.71 -0.83 7.62 16 29 H 0.42 7.77 6.16 -92.71 -0.57 7.20 16 30 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.38 6.86 -2.39 -0.02 1.37 16 33 H 0.06 2.61 6.07 -2.39 -0.01 2.60 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 2.66 6.07 -2.39 -0.01 2.65 16 37 H 0.05 1.38 6.86 -2.39 -0.02 1.36 16 38 H 0.26 12.56 8.31 -92.71 -0.77 11.79 16 Total: -1.00 -69.15 308.89 1.43 -67.71 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.31 Total: 12.32 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 4.73 Total: 8.76 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -4.81 Total: -81.80 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.21 Total: -49.84 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -69.15 1.43 -67.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.625 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds