Wall clock time and date at job start Mon Mar 30 2020 02:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.46349 * 2 1 4 4 O 1.45697 * 110.52213 * 237.36401 * 2 1 3 5 5 C 1.33771 * 109.47767 * 241.36765 * 4 2 1 6 6 O 1.21511 * 123.07598 * 179.97438 * 5 4 2 7 7 N 1.34013 * 113.85662 * 0.02562 * 5 4 2 8 8 C 1.47095 * 108.87715 * 359.97438 * 7 5 4 9 9 H 1.08998 * 110.56169 * 118.57675 * 8 7 5 10 10 C 1.50704 * 110.56303 * 241.42634 * 8 7 5 11 11 O 1.21281 * 119.99946 * 14.35831 * 10 8 7 12 12 N 1.34777 * 119.99592 * 194.36149 * 10 8 7 13 13 C 1.46502 * 119.99493 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47050 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46679 * 299.99803 * 14 13 12 16 16 C 1.52997 * 109.47419 * 59.99559 * 14 13 12 17 17 C 1.50695 * 109.47141 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99977 * 357.00322 * 17 14 13 19 19 C 1.37880 * 119.99848 * 177.00029 * 17 14 13 20 20 N 1.31513 * 120.00217 * 5.54830 * 19 17 14 21 21 Si 1.86802 * 119.99714 * 185.53825 * 19 17 14 22 22 H 1.48507 * 109.46884 * 85.00767 * 21 19 17 23 23 H 1.48505 * 109.46922 * 205.00403 * 21 19 17 24 24 H 1.48492 * 109.47450 * 325.00523 * 21 19 17 25 25 H 1.09003 * 109.46865 * 181.17929 * 1 2 3 26 26 H 1.09001 * 109.46661 * 61.18435 * 1 2 3 27 27 H 1.08998 * 109.47395 * 301.18218 * 1 2 3 28 28 H 0.97000 * 125.55856 * 179.97438 * 7 5 4 29 29 H 0.97000 * 120.00607 * 359.97438 * 12 10 8 30 30 H 1.08999 * 109.46957 * 299.99753 * 13 12 10 31 31 H 1.09000 * 109.47495 * 59.99663 * 13 12 10 32 32 H 1.08995 * 109.47532 * 53.93211 * 15 14 13 33 33 H 1.09000 * 109.47381 * 173.93811 * 15 14 13 34 34 H 1.09002 * 109.47352 * 293.93040 * 15 14 13 35 35 H 1.08999 * 109.47004 * 60.00123 * 16 14 13 36 36 H 1.09000 * 109.47395 * 180.02562 * 16 14 13 37 37 H 1.09000 * 109.47205 * 300.00650 * 16 14 13 38 38 H 0.96995 * 119.99975 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0408 -0.7359 -1.1491 5 6 2.7632 -1.7791 -0.7255 6 8 3.3051 -2.5611 -1.4813 7 7 2.8337 -1.8835 0.6087 8 6 2.0699 -0.7814 1.2134 9 1 1.2481 -1.1700 1.8148 10 6 2.9713 0.0921 2.0475 11 8 4.1756 -0.0011 1.9393 12 7 2.4389 0.9767 2.9138 13 6 3.3151 1.8263 3.7243 14 6 2.4641 2.7320 4.6168 15 6 1.5669 3.6112 3.7432 16 6 1.5953 1.8714 5.5362 17 6 3.3654 3.6054 5.4509 18 1 4.4374 3.4892 5.3898 19 6 2.8214 4.5528 6.2921 20 7 1.5176 4.6216 6.4493 21 14 3.9366 5.7385 7.2085 22 1 4.2488 6.8990 6.3361 23 1 3.2510 6.2134 8.4373 24 1 5.1963 5.0460 7.5808 25 1 -0.3633 -1.0275 0.0212 26 1 -0.3633 0.4953 -0.9004 27 1 -0.3634 0.5321 0.8792 28 1 3.3107 -2.5733 1.0961 29 1 1.4756 1.0515 3.0001 30 1 3.9539 1.1999 4.3468 31 1 3.9344 2.4391 3.0693 32 1 0.9923 2.9819 3.0637 33 1 0.8854 4.1781 4.3774 34 1 2.1840 4.3001 3.1663 35 1 2.2345 1.2450 6.1584 36 1 0.9888 2.5166 6.1717 37 1 0.9435 1.2393 4.9331 38 1 1.1349 5.2878 7.0413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496048250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:17 Heat of formation + Delta-G solvation = -115.441501 kcal Electronic energy + Delta-G solvation = -21408.487217 eV Core-core repulsion = 18058.207135 eV Total energy + Delta-G solvation = -3350.280083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00596 -39.35309 -37.38888 -36.57976 -34.77163 -33.60543 -32.26216 -30.97679 -27.71339 -25.87480 -25.63002 -24.77950 -23.12492 -22.43472 -20.68175 -19.04508 -18.29631 -17.66370 -17.17616 -16.19676 -15.76946 -15.53332 -15.00689 -14.80412 -14.69440 -14.62415 -13.70369 -13.57384 -13.40066 -13.02314 -12.80254 -12.45024 -12.34588 -11.97113 -11.55303 -11.31248 -10.99586 -10.95795 -10.83847 -10.78277 -10.52401 -10.38491 -10.25087 -9.77598 -9.59177 -9.25700 -8.92098 -8.70128 -8.45759 -6.12972 -4.22078 2.39938 2.47995 2.59853 3.07044 3.22731 3.29754 3.33121 3.51327 3.82934 4.27682 4.31875 4.48802 4.63954 4.92564 4.99611 5.14806 5.31790 5.40401 5.68061 6.02777 6.14680 6.34349 6.55550 6.58019 6.65062 6.74288 6.78253 6.86527 7.05211 7.20272 7.41971 7.58463 7.71026 7.86566 7.93062 8.00174 8.23140 8.33760 8.77922 9.44202 10.89069 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.004116 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.457915 B = 6800.411667 C = 7128.603786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.122 0.878 4 O -0.321 6.321 5 C 0.651 3.349 6 O -0.524 6.524 7 N -0.709 5.709 8 C 0.077 3.923 9 H 0.126 0.874 10 C 0.493 3.507 11 O -0.530 6.530 12 N -0.707 5.707 13 C 0.130 3.870 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.131 4.131 17 C -0.510 4.510 18 H 0.058 0.942 19 C 0.069 3.931 20 N -0.884 5.884 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.439 0.561 29 H 0.400 0.600 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.006 0.994 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.027 0.973 36 H 0.087 0.913 37 H 0.005 0.995 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -7.568 -7.122 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.139 0.861 4 O -0.232 6.232 5 C 0.404 3.596 6 O -0.409 6.409 7 N -0.381 5.381 8 C -0.033 4.033 9 H 0.143 0.857 10 C 0.275 3.725 11 O -0.406 6.406 12 N -0.358 5.358 13 C 0.008 3.992 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.188 4.188 17 C -0.549 4.549 18 H 0.076 0.924 19 C -0.133 4.133 20 N -0.523 5.523 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.283 0.717 29 H 0.236 0.764 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.024 0.976 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.418 -7.716 -7.811 12.244 hybrid contribution 0.367 0.506 1.077 1.245 sum -5.051 -7.210 -6.734 11.084 Atomic orbital electron populations 1.22181 0.90877 1.04111 1.04794 1.23835 0.96815 0.96737 0.80241 0.86069 1.87315 1.64000 1.39041 1.32823 1.18419 0.78065 0.80628 0.82485 1.91072 1.49207 1.42729 1.57887 1.45640 1.56227 1.30274 1.05938 1.22489 0.95355 0.89110 0.96384 0.85678 1.20409 0.89123 0.81697 0.81318 1.90751 1.14585 1.68273 1.67018 1.46328 1.11374 1.38154 1.39966 1.21824 0.92855 0.91837 0.92653 1.18374 0.92961 0.91601 0.91558 1.21818 0.99847 0.99155 0.97889 1.21860 0.99060 0.98184 0.99735 1.20936 0.92703 1.17695 1.23530 0.92415 1.24860 0.95048 0.97197 0.96187 1.69805 1.09995 1.34781 1.37676 0.86594 0.80791 0.81396 0.79148 1.20568 1.21286 1.19953 0.91038 0.89949 0.89106 0.71717 0.76444 0.92366 0.92324 0.97508 0.89893 0.95070 0.95386 0.89480 0.97614 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.45 37.16 0.35 -0.67 16 2 C 0.08 0.77 4.14 -26.16 -0.11 0.66 16 3 H 0.12 1.17 7.73 -51.93 -0.40 0.77 16 4 O -0.32 -4.26 10.80 -37.83 -0.41 -4.67 16 5 C 0.65 9.58 9.16 53.71 0.49 10.08 16 6 O -0.52 -9.54 18.04 -19.12 -0.34 -9.88 16 7 N -0.71 -8.38 5.63 -59.35 -0.33 -8.72 16 8 C 0.08 0.78 3.82 -68.19 -0.26 0.52 16 9 H 0.13 0.84 7.73 -51.93 -0.40 0.44 16 10 C 0.49 7.01 6.96 -10.98 -0.08 6.93 16 11 O -0.53 -9.91 16.56 5.56 0.09 -9.81 16 12 N -0.71 -10.17 4.90 -60.29 -0.30 -10.46 16 13 C 0.13 2.45 4.50 -4.04 -0.02 2.43 16 14 C 0.06 1.17 0.50 -155.66 -0.08 1.09 16 15 C -0.13 -2.59 8.03 37.16 0.30 -2.30 16 16 C -0.13 -2.64 8.10 37.16 0.30 -2.34 16 17 C -0.51 -12.54 8.01 -34.44 -0.28 -12.81 16 18 H 0.06 1.45 7.75 -52.48 -0.41 1.04 16 19 C 0.07 1.72 5.13 -17.82 -0.09 1.63 16 20 N -0.88 -22.27 9.45 55.43 0.52 -21.75 16 21 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.44 4.61 8.96 -40.82 -0.37 4.24 16 29 H 0.40 4.82 6.16 -40.82 -0.25 4.57 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.01 0.10 6.71 -51.93 -0.35 -0.25 16 33 H 0.08 1.87 6.25 -51.93 -0.32 1.55 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 2.00 6.10 -51.93 -0.32 1.68 16 37 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 38 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -30.55 313.61 -5.80 -36.35 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.27 Total: 4.16 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 0.53 Total: 5.21 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.11 Total: -40.93 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.66 Total: -24.36 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.55 -5.80 -36.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.094 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds