Wall clock time and date at job start Mon Mar 30 2020 02:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.46349 * 2 1 4 4 O 1.45697 * 110.52213 * 237.36401 * 2 1 3 5 5 C 1.33771 * 109.47767 * 241.36765 * 4 2 1 6 6 O 1.21511 * 123.07598 * 179.97438 * 5 4 2 7 7 N 1.34013 * 113.85662 * 0.02562 * 5 4 2 8 8 C 1.47095 * 108.87715 * 359.97438 * 7 5 4 9 9 H 1.08998 * 110.56169 * 118.57675 * 8 7 5 10 10 C 1.50704 * 110.56303 * 241.42634 * 8 7 5 11 11 O 1.21281 * 119.99946 * 14.35831 * 10 8 7 12 12 N 1.34777 * 119.99592 * 194.36149 * 10 8 7 13 13 C 1.46502 * 119.99493 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47050 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46679 * 299.99803 * 14 13 12 16 16 C 1.52997 * 109.47419 * 59.99559 * 14 13 12 17 17 C 1.50695 * 109.47141 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99977 * 357.00322 * 17 14 13 19 19 C 1.37880 * 119.99848 * 177.00029 * 17 14 13 20 20 N 1.31513 * 120.00217 * 5.54830 * 19 17 14 21 21 Si 1.86802 * 119.99714 * 185.53825 * 19 17 14 22 22 H 1.48507 * 109.46884 * 85.00767 * 21 19 17 23 23 H 1.48505 * 109.46922 * 205.00403 * 21 19 17 24 24 H 1.48492 * 109.47450 * 325.00523 * 21 19 17 25 25 H 1.09003 * 109.46865 * 181.17929 * 1 2 3 26 26 H 1.09001 * 109.46661 * 61.18435 * 1 2 3 27 27 H 1.08998 * 109.47395 * 301.18218 * 1 2 3 28 28 H 0.97000 * 125.55856 * 179.97438 * 7 5 4 29 29 H 0.97000 * 120.00607 * 359.97438 * 12 10 8 30 30 H 1.08999 * 109.46957 * 299.99753 * 13 12 10 31 31 H 1.09000 * 109.47495 * 59.99663 * 13 12 10 32 32 H 1.08995 * 109.47532 * 53.93211 * 15 14 13 33 33 H 1.09000 * 109.47381 * 173.93811 * 15 14 13 34 34 H 1.09002 * 109.47352 * 293.93040 * 15 14 13 35 35 H 1.08999 * 109.47004 * 60.00123 * 16 14 13 36 36 H 1.09000 * 109.47395 * 180.02562 * 16 14 13 37 37 H 1.09000 * 109.47205 * 300.00650 * 16 14 13 38 38 H 0.96995 * 119.99975 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0408 -0.7359 -1.1491 5 6 2.7632 -1.7791 -0.7255 6 8 3.3051 -2.5611 -1.4813 7 7 2.8337 -1.8835 0.6087 8 6 2.0699 -0.7814 1.2134 9 1 1.2481 -1.1700 1.8148 10 6 2.9713 0.0921 2.0475 11 8 4.1756 -0.0011 1.9393 12 7 2.4389 0.9767 2.9138 13 6 3.3151 1.8263 3.7243 14 6 2.4641 2.7320 4.6168 15 6 1.5669 3.6112 3.7432 16 6 1.5953 1.8714 5.5362 17 6 3.3654 3.6054 5.4509 18 1 4.4374 3.4892 5.3898 19 6 2.8214 4.5528 6.2921 20 7 1.5176 4.6216 6.4493 21 14 3.9366 5.7385 7.2085 22 1 4.2488 6.8990 6.3361 23 1 3.2510 6.2134 8.4373 24 1 5.1963 5.0460 7.5808 25 1 -0.3633 -1.0275 0.0212 26 1 -0.3633 0.4953 -0.9004 27 1 -0.3634 0.5321 0.8792 28 1 3.3107 -2.5733 1.0961 29 1 1.4756 1.0515 3.0001 30 1 3.9539 1.1999 4.3468 31 1 3.9344 2.4391 3.0693 32 1 0.9923 2.9819 3.0637 33 1 0.8854 4.1781 4.3774 34 1 2.1840 4.3001 3.1663 35 1 2.2345 1.2450 6.1584 36 1 0.9888 2.5166 6.1717 37 1 0.9435 1.2393 4.9331 38 1 1.1349 5.2878 7.0413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496048250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:16 Heat of formation + Delta-G solvation = -138.653534 kcal Electronic energy + Delta-G solvation = -21409.493767 eV Core-core repulsion = 18058.207135 eV Total energy + Delta-G solvation = -3351.286632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.00538 -40.62210 -38.56332 -38.11125 -35.79040 -35.10843 -33.24113 -32.50100 -28.73248 -27.50020 -27.33021 -26.23678 -24.02848 -23.40373 -21.90344 -20.62967 -19.41027 -18.70250 -18.25750 -17.75657 -17.12506 -16.81799 -16.46966 -16.19465 -15.75197 -15.63953 -15.02132 -14.75548 -14.65073 -14.41127 -13.96817 -13.80151 -13.20159 -13.06003 -12.96500 -12.72453 -12.64199 -12.60034 -12.19781 -12.13434 -12.02073 -11.87748 -11.51917 -11.43754 -11.20020 -10.68819 -10.39362 -10.35472 -10.02100 -8.01728 -6.14983 1.32346 1.38415 1.43068 1.47349 1.53235 1.58626 2.03425 2.45908 2.54841 2.98117 3.23104 3.46323 3.60418 3.90107 4.12607 4.29525 4.45094 4.53845 4.76853 4.85621 4.89530 5.03096 5.11137 5.13106 5.24737 5.28520 5.33924 5.58398 5.62635 5.71386 5.73748 6.05020 6.21367 6.26007 6.46391 6.53092 6.87640 6.89222 7.16943 7.52488 8.97107 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.004116 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.457915 B = 6800.411667 C = 7128.603786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.076 3.924 3 H 0.121 0.879 4 O -0.334 6.334 5 C 0.649 3.351 6 O -0.569 6.569 7 N -0.700 5.700 8 C 0.088 3.912 9 H 0.176 0.824 10 C 0.496 3.504 11 O -0.577 6.577 12 N -0.694 5.694 13 C 0.147 3.853 14 C 0.050 3.950 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.530 4.530 18 H 0.041 0.959 19 C 0.034 3.966 20 N -0.895 5.895 21 Si 0.937 3.063 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.279 1.279 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.445 0.555 29 H 0.416 0.584 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -8.055 -7.289 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.139 0.861 4 O -0.244 6.244 5 C 0.402 3.598 6 O -0.457 6.457 7 N -0.371 5.371 8 C -0.021 4.021 9 H 0.193 0.807 10 C 0.280 3.720 11 O -0.457 6.457 12 N -0.347 5.347 13 C 0.023 3.977 14 C 0.050 3.950 15 C -0.178 4.178 16 C -0.179 4.179 17 C -0.569 4.569 18 H 0.060 0.940 19 C -0.167 4.167 20 N -0.533 5.533 21 Si 0.764 3.236 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.204 1.204 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.289 0.711 29 H 0.255 0.745 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.396 -8.190 -7.956 13.604 hybrid contribution 0.986 0.698 1.144 1.663 sum -6.410 -7.492 -6.812 11.985 Atomic orbital electron populations 1.22251 0.87626 1.05295 1.06253 1.24210 0.99143 0.96048 0.78589 0.86139 1.87302 1.63798 1.38705 1.34586 1.18543 0.77807 0.80517 0.82915 1.91029 1.51085 1.44522 1.59108 1.45650 1.55898 1.30441 1.05139 1.22693 0.95046 0.87930 0.96453 0.80673 1.21054 0.88939 0.81222 0.80740 1.90747 1.17082 1.69511 1.68349 1.46024 1.11628 1.37559 1.39443 1.21308 0.92683 0.91504 0.92188 1.18376 0.92965 0.91844 0.91862 1.21661 0.99208 0.99129 0.97781 1.21694 0.98823 0.97851 0.99538 1.21265 0.92646 1.18687 1.24315 0.94047 1.25346 0.96021 0.98327 0.96996 1.69900 1.10507 1.34975 1.37933 0.85910 0.79442 0.79917 0.78312 1.20610 1.21023 1.20375 0.90065 0.89619 0.86456 0.71084 0.74538 0.94141 0.94142 0.93220 0.92326 0.96493 0.96502 0.92135 0.93525 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.45 71.98 0.68 -0.56 16 2 C 0.08 1.20 4.14 30.96 0.13 1.33 16 3 H 0.12 1.95 7.73 -2.39 -0.02 1.94 16 4 O -0.33 -8.26 10.80 -47.31 -0.51 -8.77 16 5 C 0.65 18.40 9.16 129.91 1.19 19.59 16 6 O -0.57 -20.78 18.04 19.65 0.35 -20.43 16 7 N -0.70 -15.12 5.63 -573.40 -3.23 -18.35 16 8 C 0.09 1.48 3.82 44.50 0.17 1.65 16 9 H 0.18 1.30 7.73 -2.39 -0.02 1.29 16 10 C 0.50 12.88 6.96 87.66 0.61 13.49 16 11 O -0.58 -21.10 16.56 -3.03 -0.05 -21.15 16 12 N -0.69 -17.88 4.90 -463.05 -2.27 -20.15 16 13 C 0.15 5.37 4.50 86.38 0.39 5.76 16 14 C 0.05 2.05 0.50 -52.93 -0.03 2.02 16 15 C -0.12 -4.59 8.03 71.98 0.58 -4.01 16 16 C -0.12 -4.67 8.10 71.98 0.58 -4.09 16 17 C -0.53 -26.23 8.01 25.60 0.20 -26.02 16 18 H 0.04 2.12 7.75 -2.91 -0.02 2.10 16 19 C 0.03 1.67 5.13 84.66 0.43 2.10 16 20 N -0.89 -44.84 9.45 21.45 0.20 -44.64 16 21 Si 0.94 40.86 29.54 68.60 2.03 42.89 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.44 8.59 8.96 -92.71 -0.83 7.76 16 29 H 0.42 7.99 6.16 -92.71 -0.57 7.42 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.42 6.71 -2.39 -0.02 1.40 16 33 H 0.06 2.56 6.25 -2.39 -0.01 2.54 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 2.70 6.10 -2.39 -0.01 2.68 16 37 H 0.05 1.37 6.86 -2.39 -0.02 1.35 16 38 H 0.26 12.65 8.31 -92.71 -0.77 11.88 16 Total: -1.00 -68.62 313.61 1.16 -67.46 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -0.31 Total: 11.88 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 4.94 Total: 11.25 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -5.30 Total: -83.13 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.21 Total: -50.35 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -68.62 1.16 -67.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.191 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds