Wall clock time and date at job start Mon Mar 30 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.46258 * 2 1 4 4 O 1.45696 * 110.52059 * 122.63327 * 2 1 3 5 5 C 1.33774 * 109.47813 * 118.63164 * 4 2 1 6 6 O 1.21514 * 123.07243 * 180.02562 * 5 4 2 7 7 N 1.34005 * 113.85452 * 359.97438 * 5 4 2 8 8 C 1.47089 * 108.88053 * 0.02562 * 7 5 4 9 9 H 1.09001 * 110.56370 * 241.42938 * 8 7 5 10 10 C 1.50706 * 110.56263 * 118.57505 * 8 7 5 11 11 O 1.21274 * 119.99893 * 345.64009 * 10 8 7 12 12 N 1.34768 * 119.99923 * 165.64396 * 10 8 7 13 13 C 1.46502 * 120.00024 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46926 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47477 * 299.99798 * 14 13 12 16 16 C 1.52997 * 109.47232 * 60.00406 * 14 13 12 17 17 C 1.50706 * 109.46825 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00054 * 359.97438 * 17 14 13 19 19 C 1.37879 * 120.00051 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99622 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99963 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47065 * 89.99977 * 21 19 17 23 23 H 1.48500 * 109.46851 * 209.99984 * 21 19 17 24 24 H 1.48496 * 109.46844 * 329.99691 * 21 19 17 25 25 H 1.09001 * 109.47002 * 298.82060 * 1 2 3 26 26 H 1.08993 * 109.46955 * 58.82497 * 1 2 3 27 27 H 1.09000 * 109.47050 * 178.82326 * 1 2 3 28 28 H 0.96998 * 125.55368 * 179.97438 * 7 5 4 29 29 H 0.97004 * 120.00406 * 359.97438 * 12 10 8 30 30 H 1.08998 * 109.47003 * 299.99536 * 13 12 10 31 31 H 1.09003 * 109.47373 * 60.00054 * 13 12 10 32 32 H 1.08999 * 109.46942 * 59.99840 * 15 14 13 33 33 H 1.08998 * 109.47457 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47065 * 300.00597 * 15 14 13 35 35 H 1.08996 * 109.47481 * 59.99066 * 16 14 13 36 36 H 1.08998 * 109.47115 * 179.97438 * 16 14 13 37 37 H 1.09005 * 109.46752 * 299.99378 * 16 14 13 38 38 H 0.97002 * 119.99578 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0408 -0.7358 1.1491 5 6 2.7631 -1.7791 0.7256 6 8 3.3050 -2.5611 1.4815 7 7 2.8337 -1.8835 -0.6085 8 6 2.0699 -0.7815 -1.2133 9 1 1.2481 -1.1701 -1.8147 10 6 2.9713 0.0919 -2.0475 11 8 4.1756 -0.0013 -1.9392 12 7 2.4391 0.9765 -2.9138 13 6 3.3153 1.8259 -3.7243 14 6 2.4643 2.7317 -4.6168 15 6 1.5955 1.8711 -5.5362 16 6 1.5673 3.6110 -3.7434 17 6 3.3657 3.6050 -5.4510 18 1 4.4382 3.5226 -5.3540 19 6 2.8212 4.5100 -6.3374 20 7 1.5152 4.6107 -6.4551 21 14 3.9386 5.5920 -7.3719 22 1 4.2489 4.9036 -8.6506 23 1 3.2558 6.8798 -7.6561 24 1 5.1990 5.8529 -6.6315 25 1 -0.3633 0.4954 0.9004 26 1 -0.3633 0.5319 -0.8792 27 1 -0.3633 -1.0275 -0.0211 28 1 3.3112 -2.5730 -1.0958 29 1 1.4758 1.0509 -3.0006 30 1 3.9345 2.4388 -3.0693 31 1 3.9542 1.1996 -4.3469 32 1 0.9436 1.2391 -4.9332 33 1 0.9896 2.5163 -6.1723 34 1 2.2347 1.2447 -6.1584 35 1 2.1862 4.2241 -3.0883 36 1 0.9614 4.2566 -4.3792 37 1 0.9153 2.9790 -3.1403 38 1 1.1322 5.2471 -7.0789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496048251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:20 Heat of formation + Delta-G solvation = -115.624458 kcal Electronic energy + Delta-G solvation = -21407.653044 eV Core-core repulsion = 18057.365028 eV Total energy + Delta-G solvation = -3350.288016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.00561 -39.35181 -37.38752 -36.57979 -34.77155 -33.61038 -32.26213 -30.97407 -27.71140 -25.87028 -25.63181 -24.77989 -23.12375 -22.43408 -20.67925 -19.04620 -18.29530 -17.66171 -17.17578 -16.19628 -15.76855 -15.53340 -15.00850 -14.80370 -14.70048 -14.62406 -13.70049 -13.57071 -13.40103 -13.03248 -12.80278 -12.44994 -12.34887 -11.97054 -11.51791 -11.31861 -10.99371 -10.96960 -10.83520 -10.78204 -10.52739 -10.38024 -10.24354 -9.78464 -9.59036 -9.25495 -8.91518 -8.70231 -8.46581 -6.12512 -4.22846 2.40020 2.48121 2.59959 3.07175 3.22014 3.29650 3.33387 3.51451 3.83054 4.27770 4.31617 4.48938 4.64084 4.92687 4.99727 5.14900 5.31942 5.40535 5.68199 6.03095 6.14693 6.34190 6.55369 6.58067 6.65958 6.74345 6.78486 6.86689 7.05290 7.20464 7.41826 7.58123 7.71075 7.88249 7.93145 8.00721 8.23599 8.33821 8.77510 9.43825 10.88885 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.004113 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.641039 B = 6805.802353 C = 7151.071248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.122 0.878 4 O -0.321 6.321 5 C 0.651 3.349 6 O -0.524 6.524 7 N -0.709 5.709 8 C 0.077 3.923 9 H 0.126 0.874 10 C 0.493 3.507 11 O -0.530 6.530 12 N -0.707 5.707 13 C 0.130 3.870 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.508 4.508 18 H 0.058 0.942 19 C 0.068 3.932 20 N -0.885 5.885 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.439 0.561 29 H 0.400 0.600 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.006 0.994 33 H 0.087 0.913 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.006 0.994 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -7.568 7.056 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.139 0.861 4 O -0.232 6.232 5 C 0.404 3.596 6 O -0.409 6.409 7 N -0.381 5.381 8 C -0.033 4.033 9 H 0.143 0.857 10 C 0.275 3.725 11 O -0.406 6.406 12 N -0.358 5.358 13 C 0.008 3.992 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.547 4.547 18 H 0.076 0.924 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.283 0.717 29 H 0.235 0.765 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.025 0.975 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.025 0.975 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.387 -7.712 7.750 12.189 hybrid contribution 0.363 0.424 -1.154 1.282 sum -5.024 -7.289 6.597 11.040 Atomic orbital electron populations 1.22180 0.90878 1.04108 1.04795 1.23835 0.96815 0.96738 0.80238 0.86067 1.87316 1.64004 1.39038 1.32825 1.18419 0.78064 0.80628 0.82486 1.91072 1.49214 1.42736 1.57877 1.45637 1.56203 1.30293 1.05939 1.22489 0.95356 0.89110 0.96385 0.85681 1.20406 0.89122 0.81698 0.81321 1.90749 1.14589 1.68275 1.67024 1.46320 1.11377 1.38151 1.39954 1.21837 0.92857 0.91851 0.92632 1.18376 0.92971 0.91584 0.91566 1.21842 0.99104 0.98169 0.99781 1.21841 0.99077 0.99760 0.98225 1.20957 0.92676 1.19597 1.21451 0.92418 1.24866 0.95054 0.96800 0.96669 1.69788 1.09751 1.36256 1.36565 0.86564 0.80802 0.79887 0.80607 1.20677 1.21212 1.19880 0.89947 0.89107 0.91042 0.71719 0.76452 0.92350 0.92362 0.97542 0.89483 0.95383 0.95331 0.89475 0.97530 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.45 37.16 0.35 -0.68 16 2 C 0.08 0.77 4.14 -26.16 -0.11 0.67 16 3 H 0.12 1.17 7.73 -51.93 -0.40 0.77 16 4 O -0.32 -4.26 10.80 -37.84 -0.41 -4.67 16 5 C 0.65 9.59 9.16 53.71 0.49 10.08 16 6 O -0.52 -9.54 18.04 -19.12 -0.34 -9.89 16 7 N -0.71 -8.39 5.63 -59.36 -0.33 -8.73 16 8 C 0.08 0.79 3.82 -68.19 -0.26 0.53 16 9 H 0.13 0.84 7.73 -51.93 -0.40 0.44 16 10 C 0.49 7.02 6.96 -10.99 -0.08 6.94 16 11 O -0.53 -9.92 16.56 5.56 0.09 -9.82 16 12 N -0.71 -10.18 4.96 -60.29 -0.30 -10.48 16 13 C 0.13 2.45 4.50 -4.04 -0.02 2.43 16 14 C 0.06 1.17 0.50 -155.66 -0.08 1.09 16 15 C -0.13 -2.66 8.08 37.16 0.30 -2.36 16 16 C -0.13 -2.64 8.08 37.16 0.30 -2.34 16 17 C -0.51 -12.49 8.01 -34.44 -0.28 -12.76 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.07 1.69 5.15 -17.82 -0.09 1.59 16 20 N -0.89 -22.27 9.35 55.43 0.52 -21.75 16 21 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.44 4.61 8.96 -40.82 -0.37 4.25 16 29 H 0.40 4.83 6.16 -40.82 -0.25 4.58 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.09 2.00 6.07 -51.93 -0.32 1.68 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.99 6.07 -51.93 -0.32 1.68 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 LS Contribution 313.54 15.07 4.72 4.72 Total: -1.00 -30.53 313.54 -5.80 -36.33 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.26 Total: 4.27 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 0.53 Total: 5.19 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.11 Total: -40.96 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.66 Total: -24.38 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.53 -5.80 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.298 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds