Wall clock time and date at job start Mon Mar 30 2020 02:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.46258 * 2 1 4 4 O 1.45696 * 110.52059 * 122.63327 * 2 1 3 5 5 C 1.33774 * 109.47813 * 118.63164 * 4 2 1 6 6 O 1.21514 * 123.07243 * 180.02562 * 5 4 2 7 7 N 1.34005 * 113.85452 * 359.97438 * 5 4 2 8 8 C 1.47089 * 108.88053 * 0.02562 * 7 5 4 9 9 H 1.09001 * 110.56370 * 241.42938 * 8 7 5 10 10 C 1.50706 * 110.56263 * 118.57505 * 8 7 5 11 11 O 1.21274 * 119.99893 * 345.64009 * 10 8 7 12 12 N 1.34768 * 119.99923 * 165.64396 * 10 8 7 13 13 C 1.46502 * 120.00024 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46926 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47477 * 299.99798 * 14 13 12 16 16 C 1.52997 * 109.47232 * 60.00406 * 14 13 12 17 17 C 1.50706 * 109.46825 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00054 * 359.97438 * 17 14 13 19 19 C 1.37879 * 120.00051 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99622 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99963 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47065 * 89.99977 * 21 19 17 23 23 H 1.48500 * 109.46851 * 209.99984 * 21 19 17 24 24 H 1.48496 * 109.46844 * 329.99691 * 21 19 17 25 25 H 1.09001 * 109.47002 * 298.82060 * 1 2 3 26 26 H 1.08993 * 109.46955 * 58.82497 * 1 2 3 27 27 H 1.09000 * 109.47050 * 178.82326 * 1 2 3 28 28 H 0.96998 * 125.55368 * 179.97438 * 7 5 4 29 29 H 0.97004 * 120.00406 * 359.97438 * 12 10 8 30 30 H 1.08998 * 109.47003 * 299.99536 * 13 12 10 31 31 H 1.09003 * 109.47373 * 60.00054 * 13 12 10 32 32 H 1.08999 * 109.46942 * 59.99840 * 15 14 13 33 33 H 1.08998 * 109.47457 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47065 * 300.00597 * 15 14 13 35 35 H 1.08996 * 109.47481 * 59.99066 * 16 14 13 36 36 H 1.08998 * 109.47115 * 179.97438 * 16 14 13 37 37 H 1.09005 * 109.46752 * 299.99378 * 16 14 13 38 38 H 0.97002 * 119.99578 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0408 -0.7358 1.1491 5 6 2.7631 -1.7791 0.7256 6 8 3.3050 -2.5611 1.4815 7 7 2.8337 -1.8835 -0.6085 8 6 2.0699 -0.7815 -1.2133 9 1 1.2481 -1.1701 -1.8147 10 6 2.9713 0.0919 -2.0475 11 8 4.1756 -0.0013 -1.9392 12 7 2.4391 0.9765 -2.9138 13 6 3.3153 1.8259 -3.7243 14 6 2.4643 2.7317 -4.6168 15 6 1.5955 1.8711 -5.5362 16 6 1.5673 3.6110 -3.7434 17 6 3.3657 3.6050 -5.4510 18 1 4.4382 3.5226 -5.3540 19 6 2.8212 4.5100 -6.3374 20 7 1.5152 4.6107 -6.4551 21 14 3.9386 5.5920 -7.3719 22 1 4.2489 4.9036 -8.6506 23 1 3.2558 6.8798 -7.6561 24 1 5.1990 5.8529 -6.6315 25 1 -0.3633 0.4954 0.9004 26 1 -0.3633 0.5319 -0.8792 27 1 -0.3633 -1.0275 -0.0211 28 1 3.3112 -2.5730 -1.0958 29 1 1.4758 1.0509 -3.0006 30 1 3.9345 2.4388 -3.0693 31 1 3.9542 1.1996 -4.3469 32 1 0.9436 1.2391 -4.9332 33 1 0.9896 2.5163 -6.1723 34 1 2.2347 1.2447 -6.1584 35 1 2.1862 4.2241 -3.0883 36 1 0.9614 4.2566 -4.3792 37 1 0.9153 2.9790 -3.1403 38 1 1.1322 5.2471 -7.0789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496048251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:19 Heat of formation + Delta-G solvation = -138.821359 kcal Electronic energy + Delta-G solvation = -21408.658937 eV Core-core repulsion = 18057.365028 eV Total energy + Delta-G solvation = -3351.293910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.00639 -40.62174 -38.56314 -38.11231 -35.79163 -35.11280 -33.24081 -32.49785 -28.73148 -27.49592 -27.33265 -26.23591 -24.02876 -23.40441 -21.90167 -20.63095 -19.41001 -18.70204 -18.25842 -17.75569 -17.12464 -16.82135 -16.47219 -16.19645 -15.75333 -15.64063 -15.01802 -14.76071 -14.65505 -14.41154 -13.96717 -13.79980 -13.17040 -13.07023 -12.96775 -12.72691 -12.63905 -12.59172 -12.20876 -12.12692 -12.02060 -11.87796 -11.52024 -11.43948 -11.19999 -10.68065 -10.38053 -10.37141 -10.02359 -8.00966 -6.15514 1.32339 1.38368 1.42717 1.47347 1.53909 1.58620 2.03454 2.45879 2.54833 2.98076 3.23473 3.46327 3.60366 3.90059 4.12544 4.29446 4.45237 4.53801 4.76661 4.85568 4.89483 5.02784 5.11760 5.13488 5.25336 5.28501 5.34357 5.58307 5.62553 5.70899 5.73579 6.04965 6.22945 6.26381 6.47219 6.53099 6.87576 6.88968 7.16956 7.52367 8.97218 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.004113 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.641039 B = 6805.802353 C = 7151.071248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.076 3.924 3 H 0.121 0.879 4 O -0.334 6.334 5 C 0.649 3.351 6 O -0.569 6.569 7 N -0.700 5.700 8 C 0.088 3.912 9 H 0.176 0.824 10 C 0.496 3.504 11 O -0.578 6.578 12 N -0.694 5.694 13 C 0.147 3.853 14 C 0.050 3.950 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.529 4.529 18 H 0.041 0.959 19 C 0.032 3.968 20 N -0.895 5.895 21 Si 0.938 3.062 22 H -0.281 1.281 23 H -0.284 1.284 24 H -0.278 1.278 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.445 0.555 29 H 0.416 0.584 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -8.086 7.172 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.138 0.862 4 O -0.244 6.244 5 C 0.402 3.598 6 O -0.457 6.457 7 N -0.371 5.371 8 C -0.021 4.021 9 H 0.193 0.807 10 C 0.280 3.720 11 O -0.457 6.457 12 N -0.346 5.346 13 C 0.023 3.977 14 C 0.050 3.950 15 C -0.180 4.180 16 C -0.180 4.180 17 C -0.568 4.568 18 H 0.059 0.941 19 C -0.168 4.168 20 N -0.534 5.534 21 Si 0.765 3.235 22 H -0.207 1.207 23 H -0.210 1.210 24 H -0.203 1.203 25 H 0.104 0.896 26 H 0.135 0.865 27 H 0.099 0.901 28 H 0.289 0.711 29 H 0.254 0.746 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.376 -8.217 7.843 13.544 hybrid contribution 0.984 0.628 -1.203 1.676 sum -6.392 -7.589 6.640 11.939 Atomic orbital electron populations 1.22249 0.87625 1.05294 1.06250 1.24209 0.99144 0.96044 0.78591 0.86151 1.87303 1.63803 1.38703 1.34586 1.18543 0.77806 0.80518 0.82916 1.91030 1.51090 1.44528 1.59097 1.45646 1.55874 1.30458 1.05140 1.22693 0.95048 0.87930 0.96452 0.80674 1.21052 0.88940 0.81226 0.80745 1.90745 1.17086 1.69518 1.68355 1.46016 1.11629 1.37550 1.39432 1.21320 0.92685 0.91520 0.92162 1.18376 0.92972 0.91817 0.91873 1.21682 0.98871 0.97838 0.99588 1.21684 0.98852 0.99681 0.97801 1.21283 0.92613 1.20546 1.22312 0.94055 1.25352 0.96028 0.97803 0.97602 1.69885 1.10259 1.36470 1.36777 0.85878 0.79428 0.78792 0.79390 1.20685 1.20958 1.20349 0.89617 0.86466 0.90061 0.71085 0.74552 0.94212 0.94109 0.93473 0.92115 0.96479 0.96424 0.92121 0.93325 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.45 71.98 0.68 -0.57 16 2 C 0.08 1.21 4.14 30.96 0.13 1.34 16 3 H 0.12 1.96 7.73 -2.39 -0.02 1.95 16 4 O -0.33 -8.28 10.80 -47.34 -0.51 -8.79 16 5 C 0.65 18.42 9.16 129.91 1.19 19.61 16 6 O -0.57 -20.80 18.04 19.64 0.35 -20.44 16 7 N -0.70 -15.14 5.63 -573.41 -3.23 -18.37 16 8 C 0.09 1.48 3.82 44.50 0.17 1.65 16 9 H 0.18 1.31 7.73 -2.39 -0.02 1.29 16 10 C 0.50 12.91 6.96 87.66 0.61 13.52 16 11 O -0.58 -21.14 16.56 -3.01 -0.05 -21.19 16 12 N -0.69 -17.93 4.96 -463.06 -2.30 -20.22 16 13 C 0.15 5.38 4.50 86.38 0.39 5.77 16 14 C 0.05 2.05 0.50 -52.93 -0.03 2.03 16 15 C -0.12 -4.70 8.08 71.98 0.58 -4.12 16 16 C -0.12 -4.69 8.08 71.98 0.58 -4.11 16 17 C -0.53 -26.13 8.01 25.60 0.21 -25.93 16 18 H 0.04 2.12 7.74 -2.91 -0.02 2.09 16 19 C 0.03 1.61 5.15 84.65 0.44 2.04 16 20 N -0.90 -44.81 9.35 21.45 0.20 -44.61 16 21 Si 0.94 40.84 29.54 68.60 2.03 42.86 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.44 8.61 8.96 -92.71 -0.83 7.77 16 29 H 0.42 8.02 6.16 -92.71 -0.57 7.45 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.06 2.70 6.07 -2.39 -0.01 2.69 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 2.69 6.07 -2.39 -0.01 2.67 16 37 H 0.05 1.40 6.86 -2.38 -0.02 1.39 16 38 H 0.26 12.63 8.31 -92.71 -0.77 11.86 16 Total: -1.00 -68.53 313.54 1.13 -67.39 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.31 Total: 12.14 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.94 Total: 11.22 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -5.32 Total: -83.21 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.21 Total: -50.41 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -68.53 1.13 -67.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.427 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds