Wall clock time and date at job start Mon Mar 30 2020 02:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.57217 * 2 1 4 4 O 1.46040 * 110.56669 * 237.12023 * 2 1 3 5 5 C 1.33773 * 109.50672 * 241.31694 * 4 2 1 6 6 O 1.21516 * 123.06956 * 180.02562 * 5 4 2 7 7 N 1.34006 * 113.85869 * 0.08346 * 5 4 2 8 8 C 1.47090 * 108.88051 * 359.97438 * 7 5 4 9 9 H 1.08998 * 110.56738 * 241.27961 * 8 7 5 10 10 C 1.50704 * 110.56140 * 118.57099 * 8 7 5 11 11 O 1.21278 * 120.00511 * 343.44696 * 10 8 7 12 12 N 1.34775 * 119.99646 * 163.44307 * 10 8 7 13 13 C 1.46499 * 120.00084 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47247 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47151 * 60.00063 * 14 13 12 16 16 C 1.52998 * 109.47158 * 300.00042 * 14 13 12 17 17 C 1.50700 * 109.47185 * 180.02562 * 14 13 12 18 18 H 1.08004 * 119.99711 * 2.34338 * 17 14 13 19 19 C 1.37871 * 120.00197 * 182.07812 * 17 14 13 20 20 N 1.31518 * 119.99879 * 353.79971 * 19 17 14 21 21 Si 1.86803 * 120.00147 * 173.80337 * 19 17 14 22 22 H 1.48497 * 109.47022 * 94.98684 * 21 19 17 23 23 H 1.48499 * 109.47169 * 214.98423 * 21 19 17 24 24 H 1.48498 * 109.47068 * 334.98674 * 21 19 17 25 25 H 1.08993 * 109.47237 * 297.29360 * 1 2 3 26 26 H 1.09001 * 109.47131 * 57.29967 * 1 2 3 27 27 H 1.09004 * 109.46665 * 177.29321 * 1 2 3 28 28 H 0.96997 * 125.55502 * 180.02562 * 7 5 4 29 29 H 0.97002 * 120.00190 * 0.02562 * 12 10 8 30 30 H 1.09006 * 109.47015 * 59.99859 * 13 12 10 31 31 H 1.09002 * 109.47441 * 300.00109 * 13 12 10 32 32 H 1.09008 * 109.46881 * 180.02562 * 15 14 13 33 33 H 1.09003 * 109.47156 * 299.99801 * 15 14 13 34 34 H 1.09002 * 109.46950 * 60.00298 * 15 14 13 35 35 H 1.09008 * 109.47022 * 294.13177 * 16 14 13 36 36 H 1.08993 * 109.47444 * 54.12711 * 16 14 13 37 37 H 1.08994 * 109.47375 * 174.13305 * 16 14 13 38 38 H 0.97005 * 119.99788 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 8 2.0431 -0.7423 -1.1483 5 6 2.7666 -1.7829 -0.7204 6 8 3.3100 -2.5669 -1.4732 7 7 2.8364 -1.8825 0.6141 8 6 2.0707 -0.7794 1.2144 9 1 2.7207 -0.1460 1.8180 10 6 0.9346 -1.3153 2.0470 11 8 0.5737 -2.4653 1.9120 12 7 0.3196 -0.5167 2.9416 13 6 -0.7844 -1.0378 3.7514 14 6 -1.3015 0.0643 4.6783 15 6 -1.7966 1.2447 3.8403 16 6 -0.1705 0.5301 5.5973 17 6 -2.4368 -0.4719 5.5117 18 1 -2.7326 -1.5066 5.4195 19 6 -3.0943 0.3568 6.3959 20 7 -2.6550 1.5792 6.6021 21 14 -4.6090 -0.2565 7.3009 22 1 -4.2122 -0.7768 8.6339 23 1 -5.5701 0.8625 7.4724 24 1 -5.2487 -1.3427 6.5159 25 1 -0.3633 0.4712 0.9132 26 1 -0.3633 0.5552 -0.8648 27 1 -0.3633 -1.0266 -0.0485 28 1 3.3146 -2.5695 1.1042 29 1 0.6080 0.4032 3.0494 30 1 -0.4318 -1.8791 4.3481 31 1 -1.5904 -1.3692 3.0967 32 1 -2.1646 2.0301 4.5007 33 1 -0.9752 1.6325 3.2378 34 1 -2.6024 0.9129 3.1855 35 1 0.1115 -0.2825 6.2669 36 1 0.6906 0.8203 4.9955 37 1 -0.5079 1.3841 6.1845 38 1 -3.1174 2.1621 7.2245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496048252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:23 Heat of formation + Delta-G solvation = -111.219076 kcal Electronic energy + Delta-G solvation = -21636.197622 eV Core-core repulsion = 18286.100637 eV Total energy + Delta-G solvation = -3350.096985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02905 -39.40721 -37.33481 -36.57017 -34.73962 -33.65208 -32.19548 -30.89065 -27.48118 -25.88390 -25.68378 -24.94168 -23.14473 -22.44336 -20.45149 -19.02250 -18.37935 -17.76133 -16.78189 -16.28643 -15.79894 -15.70962 -15.23972 -14.74700 -14.67374 -14.30814 -13.85322 -13.50793 -13.28507 -13.00794 -12.65116 -12.36285 -12.28219 -11.82668 -11.52498 -11.32190 -11.00872 -10.96752 -10.82151 -10.76691 -10.53058 -10.37610 -10.24164 -9.77770 -9.58489 -9.24620 -8.92714 -8.67531 -8.45147 -6.13372 -4.22211 2.39163 2.51689 2.62806 3.07448 3.21378 3.29755 3.33965 3.52069 3.82770 4.30757 4.39281 4.44883 4.68038 4.94986 5.06552 5.14471 5.48510 5.52561 5.95129 6.03065 6.14953 6.34212 6.56203 6.58411 6.64903 6.73956 6.78528 6.86125 7.06160 7.20378 7.41558 7.58362 7.71813 7.86478 7.93843 8.00147 8.23297 8.34551 8.77783 9.44041 10.88591 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042975 B = 0.004152 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.380632 B = 6742.487176 C = 6859.051594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H 0.129 0.871 4 O -0.323 6.323 5 C 0.652 3.348 6 O -0.525 6.525 7 N -0.709 5.709 8 C 0.074 3.926 9 H 0.124 0.876 10 C 0.500 3.500 11 O -0.531 6.531 12 N -0.710 5.710 13 C 0.131 3.869 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.129 4.129 17 C -0.510 4.510 18 H 0.058 0.942 19 C 0.069 3.931 20 N -0.884 5.884 21 Si 0.892 3.108 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.439 0.561 29 H 0.400 0.600 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.007 0.993 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.004 0.996 37 H 0.085 0.915 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 2.665 -7.324 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.146 0.854 4 O -0.233 6.233 5 C 0.404 3.596 6 O -0.410 6.410 7 N -0.381 5.381 8 C -0.037 4.037 9 H 0.142 0.858 10 C 0.282 3.718 11 O -0.407 6.407 12 N -0.361 5.361 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.187 4.187 17 C -0.548 4.548 18 H 0.076 0.924 19 C -0.133 4.133 20 N -0.522 5.522 21 Si 0.720 3.280 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.282 0.718 29 H 0.236 0.764 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.026 0.974 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.023 0.977 37 H 0.104 0.896 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.976 1.787 -8.030 11.458 hybrid contribution -0.518 -0.122 1.120 1.240 sum 7.458 1.665 -6.910 10.302 Atomic orbital electron populations 1.22370 0.91211 1.04965 1.04917 1.23886 0.97173 0.95985 0.80114 0.85384 1.87371 1.63685 1.39304 1.32973 1.18410 0.78083 0.80627 0.82464 1.91072 1.49575 1.42189 1.58137 1.45633 1.54609 1.31878 1.05974 1.22517 0.94576 0.90046 0.96541 0.85817 1.20262 0.83703 0.86778 0.81011 1.90749 1.64819 1.17662 1.67484 1.46393 1.35963 1.15062 1.38722 1.21801 0.86295 0.98379 0.92607 1.18370 0.94050 0.90667 0.91389 1.21823 0.97494 1.01065 0.98455 1.21863 0.95136 1.02395 0.99314 1.20945 1.15428 0.96726 1.21725 0.92418 1.24858 0.97265 0.94952 0.96218 1.69825 1.39497 1.07136 1.35755 0.86580 0.82961 0.78539 0.79963 1.20795 1.21150 1.19816 0.88603 0.90047 0.90641 0.71760 0.76442 0.92444 0.92340 0.89823 0.97398 0.95240 0.95201 0.97712 0.89646 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 8.47 37.16 0.31 -1.52 16 2 C 0.08 0.80 4.52 -26.16 -0.12 0.68 16 3 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 4 O -0.32 -4.25 10.81 -37.83 -0.41 -4.66 16 5 C 0.65 9.56 9.16 53.71 0.49 10.05 16 6 O -0.52 -9.56 18.04 -19.12 -0.34 -9.90 16 7 N -0.71 -8.33 5.64 -59.35 -0.33 -8.66 16 8 C 0.07 0.74 4.17 -68.19 -0.28 0.45 16 9 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 10 C 0.50 6.93 5.05 -10.98 -0.06 6.88 16 11 O -0.53 -9.69 16.45 5.56 0.09 -9.60 16 12 N -0.71 -9.92 3.79 -60.29 -0.23 -10.14 16 13 C 0.13 2.41 4.50 -4.04 -0.02 2.39 16 14 C 0.06 1.16 0.50 -155.66 -0.08 1.08 16 15 C -0.13 -2.57 8.06 37.16 0.30 -2.27 16 16 C -0.13 -2.61 8.08 37.16 0.30 -2.31 16 17 C -0.51 -12.44 8.00 -34.44 -0.28 -12.71 16 18 H 0.06 1.44 7.75 -52.48 -0.41 1.03 16 19 C 0.07 1.71 5.13 -17.82 -0.09 1.62 16 20 N -0.88 -22.19 9.46 55.43 0.52 -21.66 16 21 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H 0.10 0.97 6.71 -51.93 -0.35 0.62 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.00 7.46 -51.93 -0.39 0.61 16 28 H 0.44 4.58 8.96 -40.82 -0.37 4.21 16 29 H 0.40 4.71 6.16 -40.82 -0.25 4.46 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.88 6.15 -51.92 -0.32 1.57 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 36 H 0.00 0.07 6.71 -51.93 -0.35 -0.28 16 37 H 0.08 1.94 6.20 -51.93 -0.32 1.62 16 38 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -30.26 308.97 -5.78 -36.04 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.20 Total: 4.83 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 0.48 Total: 4.34 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.04 Total: -40.47 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.66 Total: -24.17 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.26 -5.78 -36.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.180 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds