Wall clock time and date at job start Mon Mar 30 2020 02:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.57217 * 2 1 4 4 O 1.46040 * 110.56669 * 237.12023 * 2 1 3 5 5 C 1.33773 * 109.50672 * 241.31694 * 4 2 1 6 6 O 1.21516 * 123.06956 * 180.02562 * 5 4 2 7 7 N 1.34006 * 113.85869 * 0.08346 * 5 4 2 8 8 C 1.47090 * 108.88051 * 359.97438 * 7 5 4 9 9 H 1.08998 * 110.56738 * 241.27961 * 8 7 5 10 10 C 1.50704 * 110.56140 * 118.57099 * 8 7 5 11 11 O 1.21278 * 120.00511 * 343.44696 * 10 8 7 12 12 N 1.34775 * 119.99646 * 163.44307 * 10 8 7 13 13 C 1.46499 * 120.00084 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47247 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47151 * 60.00063 * 14 13 12 16 16 C 1.52998 * 109.47158 * 300.00042 * 14 13 12 17 17 C 1.50700 * 109.47185 * 180.02562 * 14 13 12 18 18 H 1.08004 * 119.99711 * 2.34338 * 17 14 13 19 19 C 1.37871 * 120.00197 * 182.07812 * 17 14 13 20 20 N 1.31518 * 119.99879 * 353.79971 * 19 17 14 21 21 Si 1.86803 * 120.00147 * 173.80337 * 19 17 14 22 22 H 1.48497 * 109.47022 * 94.98684 * 21 19 17 23 23 H 1.48499 * 109.47169 * 214.98423 * 21 19 17 24 24 H 1.48498 * 109.47068 * 334.98674 * 21 19 17 25 25 H 1.08993 * 109.47237 * 297.29360 * 1 2 3 26 26 H 1.09001 * 109.47131 * 57.29967 * 1 2 3 27 27 H 1.09004 * 109.46665 * 177.29321 * 1 2 3 28 28 H 0.96997 * 125.55502 * 180.02562 * 7 5 4 29 29 H 0.97002 * 120.00190 * 0.02562 * 12 10 8 30 30 H 1.09006 * 109.47015 * 59.99859 * 13 12 10 31 31 H 1.09002 * 109.47441 * 300.00109 * 13 12 10 32 32 H 1.09008 * 109.46881 * 180.02562 * 15 14 13 33 33 H 1.09003 * 109.47156 * 299.99801 * 15 14 13 34 34 H 1.09002 * 109.46950 * 60.00298 * 15 14 13 35 35 H 1.09008 * 109.47022 * 294.13177 * 16 14 13 36 36 H 1.08993 * 109.47444 * 54.12711 * 16 14 13 37 37 H 1.08994 * 109.47375 * 174.13305 * 16 14 13 38 38 H 0.97005 * 119.99788 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 8 2.0431 -0.7423 -1.1483 5 6 2.7666 -1.7829 -0.7204 6 8 3.3100 -2.5669 -1.4732 7 7 2.8364 -1.8825 0.6141 8 6 2.0707 -0.7794 1.2144 9 1 2.7207 -0.1460 1.8180 10 6 0.9346 -1.3153 2.0470 11 8 0.5737 -2.4653 1.9120 12 7 0.3196 -0.5167 2.9416 13 6 -0.7844 -1.0378 3.7514 14 6 -1.3015 0.0643 4.6783 15 6 -1.7966 1.2447 3.8403 16 6 -0.1705 0.5301 5.5973 17 6 -2.4368 -0.4719 5.5117 18 1 -2.7326 -1.5066 5.4195 19 6 -3.0943 0.3568 6.3959 20 7 -2.6550 1.5792 6.6021 21 14 -4.6090 -0.2565 7.3009 22 1 -4.2122 -0.7768 8.6339 23 1 -5.5701 0.8625 7.4724 24 1 -5.2487 -1.3427 6.5159 25 1 -0.3633 0.4712 0.9132 26 1 -0.3633 0.5552 -0.8648 27 1 -0.3633 -1.0266 -0.0485 28 1 3.3146 -2.5695 1.1042 29 1 0.6080 0.4032 3.0494 30 1 -0.4318 -1.8791 4.3481 31 1 -1.5904 -1.3692 3.0967 32 1 -2.1646 2.0301 4.5007 33 1 -0.9752 1.6325 3.2378 34 1 -2.6024 0.9129 3.1855 35 1 0.1115 -0.2825 6.2669 36 1 0.6906 0.8203 4.9955 37 1 -0.5079 1.3841 6.1845 38 1 -3.1174 2.1621 7.2245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496048252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:22 Heat of formation + Delta-G solvation = -134.084848 kcal Electronic energy + Delta-G solvation = -21637.189157 eV Core-core repulsion = 18286.100637 eV Total energy + Delta-G solvation = -3351.088519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.01706 -40.63806 -38.51883 -38.07212 -35.74108 -35.11993 -33.34139 -32.39439 -28.52987 -27.49072 -27.33880 -26.41896 -24.15866 -23.44248 -21.63124 -20.60968 -19.31685 -18.96738 -17.79735 -17.76039 -17.18825 -16.89213 -16.58897 -16.29431 -15.71677 -15.40821 -15.02213 -14.81589 -14.66630 -14.38313 -13.94912 -13.76261 -13.32200 -13.09825 -13.02445 -12.67899 -12.61821 -12.55317 -12.19162 -12.12966 -12.03320 -11.91938 -11.47087 -11.42213 -11.18332 -10.68294 -10.36394 -10.32373 -9.96364 -8.01542 -6.14384 1.34310 1.41843 1.44396 1.47265 1.54318 1.62892 2.06103 2.46403 2.56861 2.99988 3.23370 3.44106 3.72590 3.85933 4.19881 4.24125 4.47032 4.55656 4.68562 4.74793 4.78757 5.04326 5.10973 5.13961 5.17415 5.26126 5.36701 5.60569 5.64534 5.71660 5.74974 6.07464 6.22869 6.27091 6.47020 6.57128 6.89646 6.90379 7.21522 7.53026 8.97259 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042975 B = 0.004152 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.380632 B = 6742.487176 C = 6859.051594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.084 3.916 3 H 0.184 0.816 4 O -0.334 6.334 5 C 0.649 3.351 6 O -0.571 6.571 7 N -0.700 5.700 8 C 0.082 3.918 9 H 0.180 0.820 10 C 0.503 3.497 11 O -0.579 6.579 12 N -0.697 5.697 13 C 0.149 3.851 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.529 4.529 18 H 0.041 0.959 19 C 0.034 3.966 20 N -0.895 5.895 21 Si 0.935 3.065 22 H -0.283 1.283 23 H -0.283 1.283 24 H -0.278 1.278 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.038 0.962 28 H 0.444 0.556 29 H 0.416 0.584 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.013 0.987 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 4.479 -7.677 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.201 0.799 4 O -0.244 6.244 5 C 0.402 3.598 6 O -0.460 6.460 7 N -0.372 5.372 8 C -0.028 4.028 9 H 0.197 0.803 10 C 0.288 3.712 11 O -0.458 6.458 12 N -0.350 5.350 13 C 0.026 3.974 14 C 0.050 3.950 15 C -0.179 4.179 16 C -0.177 4.177 17 C -0.568 4.568 18 H 0.059 0.941 19 C -0.167 4.167 20 N -0.533 5.533 21 Si 0.763 3.237 22 H -0.209 1.209 23 H -0.209 1.209 24 H -0.203 1.203 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.288 0.712 29 H 0.254 0.746 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.258 3.647 -8.358 12.995 hybrid contribution -0.975 -0.694 1.248 1.729 sum 8.283 2.954 -7.110 11.309 Atomic orbital electron populations 1.22374 0.92236 1.02916 1.05961 1.24387 0.96448 0.97835 0.78364 0.79880 1.87354 1.63319 1.39063 1.34675 1.18535 0.77828 0.80514 0.82907 1.91029 1.51586 1.43948 1.59400 1.45649 1.53925 1.32427 1.05165 1.22800 0.93530 0.89729 0.96715 0.80263 1.20927 0.83916 0.85922 0.80434 1.90746 1.66285 1.20022 1.68749 1.46082 1.34852 1.15791 1.38235 1.21257 0.87074 0.97029 0.92088 1.18367 0.93348 0.91576 0.91699 1.21662 0.98672 0.99576 0.97993 1.21696 0.96243 1.00642 0.99155 1.21276 1.16920 0.96131 1.22487 0.94105 1.25337 0.99007 0.95315 0.97016 1.69918 1.39935 1.07438 1.36013 0.85902 0.80943 0.77948 0.78915 1.20898 1.20879 1.20281 0.88034 0.88473 0.94282 0.71175 0.74562 0.94412 0.94137 0.92562 0.93129 0.96124 0.96784 0.93573 0.92157 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.47 71.98 0.61 -2.55 16 2 C 0.08 1.23 4.52 30.97 0.14 1.37 16 3 H 0.18 0.79 8.14 -2.39 -0.02 0.77 16 4 O -0.33 -7.97 10.81 -47.33 -0.51 -8.48 16 5 C 0.65 18.12 9.16 129.91 1.19 19.31 16 6 O -0.57 -20.78 18.04 19.64 0.35 -20.42 16 7 N -0.70 -14.78 5.64 -573.41 -3.23 -18.02 16 8 C 0.08 1.29 4.17 44.50 0.19 1.48 16 9 H 0.18 1.03 8.14 -2.39 -0.02 1.01 16 10 C 0.50 12.70 5.05 87.66 0.44 13.14 16 11 O -0.58 -20.82 16.45 -3.02 -0.05 -20.87 16 12 N -0.70 -17.41 3.79 -463.05 -1.75 -19.17 16 13 C 0.15 5.37 4.50 86.38 0.39 5.76 16 14 C 0.05 2.05 0.50 -52.93 -0.03 2.02 16 15 C -0.12 -4.54 8.06 71.98 0.58 -3.96 16 16 C -0.12 -4.61 8.08 71.98 0.58 -4.03 16 17 C -0.53 -26.06 8.00 25.60 0.20 -25.86 16 18 H 0.04 2.09 7.75 -2.91 -0.02 2.07 16 19 C 0.03 1.67 5.13 84.65 0.43 2.10 16 20 N -0.89 -44.77 9.46 21.45 0.20 -44.56 16 21 Si 0.94 40.80 29.54 68.60 2.03 42.83 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 H 0.10 1.69 6.71 -2.39 -0.02 1.67 16 26 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 0.99 7.46 -2.38 -0.02 0.97 16 28 H 0.44 8.44 8.96 -92.71 -0.83 7.61 16 29 H 0.42 7.73 6.16 -92.71 -0.57 7.16 16 30 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 2.46 6.15 -2.38 -0.01 2.44 16 33 H 0.05 1.41 6.86 -2.39 -0.02 1.40 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.05 1.35 6.71 -2.39 -0.02 1.33 16 37 H 0.06 2.66 6.20 -2.39 -0.01 2.65 16 38 H 0.26 12.61 8.31 -92.70 -0.77 11.84 16 Total: -1.00 -69.25 308.97 1.46 -67.79 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -0.31 Total: 12.12 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 4.73 Total: 8.78 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -4.78 Total: -81.75 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.21 Total: -49.77 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -69.25 1.46 -67.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496048252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.290 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds